EsuBft1071_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1071_7a-0001
Unique NameEsuBft1071_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:249791..250295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVH4
ProteomeIdEsuBft1071_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length20
Hectar predicted targeting categoryother localisation
Evalue2.86e-20
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namecit-1.2
KEGG koko:K15188
KEGG Pathwayko05202,map05202
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
COG categoryDKL
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_7aEsuBft1071_7aEctocarpus subulatus male Bft15bgeneScaffold_633 249791..250295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_7a-0001-exonEsuBft1071_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 249791..249954 +
EsuBft1071_7a-0001-exonagat-exon-56259Ectocarpus subulatus male Bft15bexonScaffold_633 250253..250295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_7a-0001-cdsEsuBft1071_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 249791..249954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_7a-0001EsuBft1071_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 249791..250295 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1071_7a-0001 ID=EsuBft1071_7a-0001|Name=EsuBft1071_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=207bp|location=Sequence derived from alignment at Scaffold_633:249791..250295+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACACAGGAGCAGCCGCAGCGAAGCCGGCAGATGATGGAAACGA
GCGATCGGTCATGACCAAGATTGGTAGGTGCTCTGACTTTGGTCGGGAGG
ACCATGGGTGGAAGTTCACCTTGGAGGGTCTGGAAAATCCCCCCTCCCTG
AAGGAGAGCGGCAGGATTGGGACGCTGAACATCCCTTGCGCTACGACGGA
AGTGTAA
back to top

protein sequence of EsuBft1071_7a-0001

>EsuBft1071_7 ID=EsuBft1071_7|Name=EsuBft1071_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MTDTGAAAAKPADDGNERSVMTKIGRCSDFGREDHGWKFTLEGLENPPSL
KESGRIGTLNIPCATTEV
back to top

mRNA from alignment at Scaffold_633:249791..250295+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1071_7a-0001 ID=EsuBft1071_7a-0001|Name=EsuBft1071_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=505bp|location=Sequence derived from alignment at Scaffold_633:249791..250295+ (Ectocarpus subulatus male Bft15b)
ATGACTGACACAGGAGCAGCCGCAGCGAAGCCGGCAGATGATGGAAACGA
GCGATCGGTCATGACCAAGATTGGTAGGTGCTCTGACTTTGGTCGGGAGG
ACCATGGGTGGAAGTTCACCTTGGAGGGTCTGGAAAATCCCCCCTCCCTG
AAGGAGAGCGGCAGGTTAGGAGACGCTATTGCTACTGCTGCTGTACAGCA
GTGGAAACGTACAATGACCGCTCTTCTTCTCTTGGTCTTTCTCCCCCCTC
CGCCAAACGTTGATATTCGTTGCGACATACAAGAGCGCTGTTGTTCTTTG
GCGTCCTCTCTCCTCGCGAAAAAGCGAGTGACGGTTGCCATGCTGATATT
GTGAGGAATGAAGTGGTACAATAGTCAGTGGTGGCAAAATGCGCTCCGGG
GGTTTTACACCACCTGCACCGGGAAACCTCGACATATACAAGTGAAAATC
AGCACTCGTCAGGATTGGGACGCTGAACATCCCTTGCGCTACGACGGAAG
TGTAA
back to top

Coding sequence (CDS) from alignment at Scaffold_633:249791..250295+

>EsuBft1071_7a-0001 ID=EsuBft1071_7a-0001|Name=EsuBft1071_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_633:249791..250295+ (Ectocarpus subulatus male Bft15b)
ATGACTGACACAGGAGCAGCCGCAGCGAAGCCGGCAGATGATGGAAACGA
GCGATCGGTCATGACCAAGATTGGTAGGTGCTCTGACTTTGGTCGGGAGG
ACCATGGGTGGAAGTTCACCTTGGAGGGTCTGGAAAATCCCCCCTCCCTG
AAGGAGAGCGGCAGGATTGGGACGCTGAACATCCCTTGCGCTACGACGGA
AGTGTAA
back to top