EsuBft1071_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1071_6a-0001
Unique NameEsuBft1071_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_633contigScaffold_633:256370..259986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0P5
ProteomeIdEsuBft1071_6
Protein domainsG3DSA
Protein domainsIPR016137
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2880.D7G0P5|-
Length95
Hectar predicted targeting categoryother localisation
Evalue4.78e-127
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-09_001170.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRegulator of G protein signaling domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0038032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_6aEsuBft1071_6aEctocarpus subulatus male Bft15bgeneScaffold_633 256370..259986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_6a-0001EsuBft1071_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_633 256579..259986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_6a-0001-exonagat-exon-56256Ectocarpus subulatus male Bft15bexonScaffold_633 256370..256658 +
EsuBft1071_6a-0001-exonagat-exon-56257Ectocarpus subulatus male Bft15bexonScaffold_633 257447..257729 +
EsuBft1071_6a-0001-exonEsuBft1071_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_633 258408..258659 +
EsuBft1071_6a-0001-exonagat-exon-56258Ectocarpus subulatus male Bft15bexonScaffold_633 259852..259986 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_6a-0001-exonagat-five_prime_utr-419Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_633 256370..256578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1071_6a-0001-cdsEsuBft1071_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_633 256579..256658 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1071_6a-0001 ID=EsuBft1071_6a-0001|Name=EsuBft1071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=959bp|location=Sequence derived from alignment at Scaffold_633:256370..259986+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATTCTGGGTTTCCCCGCTGACTCAAAAAAGACCAGTTCAGCGATTTTCAC
CAGTCCGGCCCGAAAAAACACCAGTTCGGCTATTGCGCCGCTCTGAACAG
GTGAAAATGAGCTGGTGTTTTTTTTTTGCAGAGCTGGTAAAAAAGCCCAT
CTGTATTTCACCTGTTTAGTTTTTTTTTTTTTTTGCGTGTTCAGGAGGCG
AAGCGGTACATGGCGAGATCGAGTCGTTCCTACAGCAGTTGCGCGCAACA
CCCAGTGGCGAGGCAGCTGGGACTCTTGTGCATCAGTGGGAACATCAGAC
CCATCCAAGAGGTCCTGCATCACGCCCCAAGAAATAGCATTCCCAAAGGT
GTACAGATGCTGCTGGCGTTATCGTCGAGGAGGAGGAGGAGCAGTGCAGC
TATCGGTGGCGAGGCAGTTACTGCGGATGTGACACATAATCCGAGCCGAC
ACAGCCGCGAGTCTTACGTCGATTCGAACAGGCTCGCCGGCCTTATGAAC
TACCTCCCGCTGCGGGAAGCATTCGGAGAGTTCTGCCAGAAATCGCTCTG
CAGCGAGATTAGTCGATGTGTGTCTTTTCGGTTCCTCCTGGATGCTTCCA
AGTTCAAAGGCGTGATCGTCGAAGGCCCCGTCGACGGCGATGCCAACGGC
AGCGCCGAAGAGGAGATCGAGGCACCAACACACACGAGCGGGTTGGGGGA
CGTGGTGGCCATGGTGAACGAGTACATCAAGGACGGCGCTCCCTCGGAAA
TCAACATCGGCAGCGACACCAAGCACGACATCATGGAGCTGGCCAAGGTC
GAAGCCTTCGCCTCGCTTGACCAGGATGCGCGAAAGCTGATTTTCGTCAA
GGCCGAGAGGGAGATCAAGATGATCCTCGAAGACAATATCATGGCCAGGT
TCTTGGCGTCCGCACAGTACAAACGGGCTGTGGACGGTGACGACCATGGA
CGTGTGTAA
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protein sequence of EsuBft1071_6a-0001

>EsuBft1071_6 ID=EsuBft1071_6|Name=EsuBft1071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=249bp
MARSSRSYSSCAQHPVARQLGLLCISGNIRPIQEVLHHAPRNSIPKGVQM
LLALSSRRRRSSAAIGGEAVTADVTHNPSRHSRESYVDSNRLAGLMNYLP
LREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGVIVEGPVDGDANGSAE
EEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAF
ASLDQDARKLIFVKAEREIKMILEDNIMARFLASAQYKRAVDGDDHGRV
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mRNA from alignment at Scaffold_633:256370..259986+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1071_6a-0001 ID=EsuBft1071_6a-0001|Name=EsuBft1071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3617bp|location=Sequence derived from alignment at Scaffold_633:256370..259986+ (Ectocarpus subulatus male Bft15b)
ATTCTGGGTTTCCCCGCTGACTCAAAAAAGACCAGTTCAGCGATTTTCAC
CAGTCCGGCCCGAAAAAACACCAGTTCGGCTATTGCGCCGCTCTGAACAG
GTGAAAATGAGCTGGTGTTTTTTTTTTGCAGAGCTGGTAAAAAAGCCCAT
CTGTATTTCACCTGTTTAGTTTTTTTTTTTTTTTGCGTGTTCAGGAGGCG
AAGCGGTACATGGCGAGATCGAGTCGTTCCTACAGCAGTTGCGCGCAACA
CCCAGTGGCGAGGCAGCTGGGACTCTTGTGCATCAGTGGGTGTGGACGTG
TCATTCGGTGGGTTCCGCTGGGAGAGTGATTTACTCCTCGCAAATGGGGT
AATCGCACCACGTTGTGTTTAGTTGGTCATTCACCCTCGAGGAGGCAGTT
ACACAGTGCTTATGTTCGTCTCTGGCAGTGAAACGGATATCTGTCTCTAG
CAGTGAAAGTACCAGGAAATAGATTTCGTCATTCGCAGCTGTCATCCGTA
TGGAAGGAAGTAAGCACAAGATGCCGAACACCCTTATCAGGATGCAGCGC
ACCCTCCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTAAT
GTGAGGGCCTGGTCTGGTGAGAACCCGGCGTGCTCAGCCCCGGCTTTGCA
GGGATGCAAGGTCAATGGTCTAACGACTACGGCATGCACGGCTATGGGTC
CATGCCCCCTCCCTTTCGTGGTGGTACCAGGCCGGCGTTGTAGCTCTAGG
TATTATTTGGGGATTTTTCTTTTGGCTGTGCCCGGCCACCTTTCAGGTGT
ATAAGACAAGGAGGGCAATGAAGGCCCTGTTCACGATGCACGGGGCTATG
CACGCGCTTGGTTACTGGCCAAGGCTGATGAGCTATGAAATTCAACGGAG
TCCTACTAGGCATGTTCATACCGGTCTCTGGAAAACACAGAGCGCGCACA
CGTTTACCGCGTGGCCGGCCGTCGTCGTGATGTTCGTCATGCCGTCAATC
GCCATCCTTTGACATGTATCTGTCTGAGCGGCGTCATGCACATGTGCCTC
CTTCTCCTTTGTTGTGGGCTTGCGCAGGAACATCAGACCCATCCAAGAGG
TCCTGCATCACGCCCCAAGAAATAGCATTCCCAAAGGTGTACAGATGCTG
CTGGCGTTATCGTCGAGGAGGAGGAGGAGCAGTGCAGCTATCGGTGGCGA
GGCAGTTACTGCGGATGTGACACATAATCCGAGCCGACACAGCCGCGAGT
CTTACGTCGATTCGAACAGGCTCGCCGGCCTTATGAACTACCTCCCGCTG
CGGGAAGCATTCGGAGAGTTCTGCCAGAAATCGCTCTGCAGCGAGATTAG
TCGATGTGTGGTGTGTGTACACGCTGTGTAGTCATTGGCTCAATACTCGT
TCCTCACAAATTCTTGCTGCCCTAAGGCCTTGCCTTTCCTTCTTCAACTT
CAGACCTCTAAGAAAACGGGCCACGCAGAATATTTCATTTCTCCGCGGTG
CTTGCGTTCATTTCATTTAACGATACCGGCTTATCCGTCCTTCGGCCACG
TGCACTCACGAACAAGCCGTCTCTACCAACCATAGCTGGCATGGAGCAAT
GGACAGCATCAACCGGCGGTTCTACAAGTACGCGTTCTTTCTGACTCCCT
ACGGTTGGGGTCGCAGCAAGCGTGGCAGTATGTGTTTTGGTGTGGCGTAT
GAGGCGGCGTTTCGAAGGAATCGAGATGGCTGGTGTATGCACATCACACA
CGAGAAAGCGACAAGGGCGTGTGCTGCAGACACTTGCAGCATGGCGGCCC
TTTCCTTCCGAGTACTTTCTGGCTGAGCCGGGGCCGTTGGGCTGGATGAT
GTAATGTTCGATGTATCTCCCCGCTCCTCACCTCCCTCTAGTGTGAACAA
AGAATCGCCGTCCGCTTGTCACGCCCCCGTGTATATTCTCCTTTTTTTGA
CCATCTGCACGTCGATCGCCCTCTGACGATCGATCGGTTTTCTGATCACA
TCATGCGTGTACGTCTGTGCGCACACTCTCATTCGCAGTCTTTTCGGTTC
CTCCTGGATGCTTCCAAGTTCAAAGGCGTGATCGTCGAAGGCCCCGTCGA
CGGCGATGCCAACGGCAGCGCCGAAGAGGAGATCGAGGCACCAACACACA
CGAGCGGGTTGGGGGACGTGGTGGCCATGGTGAACGAGTACATCAAGGAC
GGCGCTCCCTCGGAAATCAACATCGGCAGCGACACCAAGCACGACATCAT
GGAGCTGGCCAAGGTCGAAGCCTTCGCCTCGCTTGACCAGGTGAGAAGTA
GAAAAGAATGGATCTCCAAGCTTTTTCTTGTCTTGGCCATGTGAGAAGCA
TGAGTAGGAAGGACGTTCGAAGCTTTCGCCTTGCTTGACCAGATGAGAAG
TAAGGAGAAGGAAGTTTGAAGCTGTCGCCTCGCTTGACAGATGAAAAGCA
AAAAGAAAGGAGACAACCCAAAGGGCGTGCGTGGAGGCATGGTGCTGGCG
TGCTCGGCGTTTCCGTTTTGGTTTCTAAGCACCGTCGGTAACAAAAGACA
TCAAACTTCGGGGAATCGAGTTTCAAAGATCGATGCATAGCTCCACGACG
ACGAGGATGCGTAATCAAAATGTAGGTATGCGGAACGCTCTCGATGAGAC
GGCCCCAACGGTGCCATTGTCTGCACCGCCATTCTTCCTGCCGTGGAGTA
ATCGAGTTTTGAAAATCGGTGCAGGGGGTGTCCTTTCTTGTGTCACTTGC
ATTAACAACATGGATGCATTTGCGTATGTGGCGGTTTGGGCGCGATCGGT
CGGGACAAGCATGTTTTCTAAGGACCACAACTTTCTTTCCGCGTCTTCAG
CCTAGGCGCGCATCCGCCGCGCCACGTGCAATAGCGCACGGGGCAATGCA
CACCTCGACCAGGCCCAGTATGGATAATATTTGTGTTGTCCACATCGAAC
ATTTCGTGACCTGCTCAAATGTCGTGCGGGGCAGCCGCATCAGTACCCAA
CTTGTCCTCACGGCAAGCCTCGGGACAGAGACAGCGTTCCGTGTGTTCTC
GACGTAGAGTGTGGAGGCGTAAGAAACACCAAGAACGGTTTCATGGATTC
TTTCTCCACCACCGGGAAGGCGCATGCACTTGACATGGCAACGAGATAAT
ATCCACTTCAACCGGGGTTTCATTATCTTTTTCAATGGTGGGAGTTGAGC
GGAAACTCCGGGTTTTGTTATGTCTGGTAAGTGTGTCGTAAAGATACTGT
GGAACAAGACCCTTCGTAGATGAGGCATAACCGACACCTCTTGGACACTT
CCAGAGGGGAAACAAGGAAGCAGTCGCCGCTTCAATTCCCGATTGTCGCC
CCCTTACTCCTAGCGCCGCGACCAGTACGGACACGAAGTTCGTACCTGGA
CGAAAACTGCCGATGATAGTATTTTGTGCAGATTCTGCTCGAAGCCGCGG
CGTTACTTTCGTTGTTCTCTTCCCATGTACAGGATGCGCGAAAGCTGATT
TTCGTCAAGGCCGAGAGGGAGATCAAGATGATCCTCGAAGACAATATCAT
GGCCAGGTTCTTGGCGTCCGCACAGTACAAACGGGCTGTGGACGGTGACG
ACCATGGACGTGTGTAA
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Coding sequence (CDS) from alignment at Scaffold_633:256370..259986+

>EsuBft1071_6a-0001 ID=EsuBft1071_6a-0001|Name=EsuBft1071_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=750bp|location=Sequence derived from alignment at Scaffold_633:256370..259986+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGATCGAGTCGTTCCTACAGCAGTTGCGCGCAACACCCAGTGGC
GAGGCAGCTGGGACTCTTGTGCATCAGTGGGAACATCAGACCCATCCAAG
AGGTCCTGCATCACGCCCCAAGAAATAGCATTCCCAAAGGTGTACAGATG
CTGCTGGCGTTATCGTCGAGGAGGAGGAGGAGCAGTGCAGCTATCGGTGG
CGAGGCAGTTACTGCGGATGTGACACATAATCCGAGCCGACACAGCCGCG
AGTCTTACGTCGATTCGAACAGGCTCGCCGGCCTTATGAACTACCTCCCG
CTGCGGGAAGCATTCGGAGAGTTCTGCCAGAAATCGCTCTGCAGCGAGAT
TAGTCGATGTGTGTCTTTTCGGTTCCTCCTGGATGCTTCCAAGTTCAAAG
GCGTGATCGTCGAAGGCCCCGTCGACGGCGATGCCAACGGCAGCGCCGAA
GAGGAGATCGAGGCACCAACACACACGAGCGGGTTGGGGGACGTGGTGGC
CATGGTGAACGAGTACATCAAGGACGGCGCTCCCTCGGAAATCAACATCG
GCAGCGACACCAAGCACGACATCATGGAGCTGGCCAAGGTCGAAGCCTTC
GCCTCGCTTGACCAGGATGCGCGAAAGCTGATTTTCGTCAAGGCCGAGAG
GGAGATCAAGATGATCCTCGAAGACAATATCATGGCCAGGTTCTTGGCGT
CCGCACAGTACAAACGGGCTGTGGACGGTGACGACCATGGACGTGTGTAA
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