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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G0Q5 |
| ProteomeId | EsuBft1070_8 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 9 |
| Max annot lvl | 2880.D7G0Q5|- |
| Length | 139 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.21e-207 |
| EggNOG OGs | KOG4308@1|root,KOG4308@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | interleukin-8 biosynthetic process |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1070_8a-0001 ID=EsuBft1070_8a-0001|Name=EsuBft1070_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1398bp|location=Sequence derived from alignment at Scaffold_475:177444..183863- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAAAGCTAGCGCGTCAGACTGGGCCTCTGTCGGTGTTTGACGCATC
TCAGAAGGGGGACTGGGACAACACTCGGAATGAAACCGTGAACGGCAAGC
CTTACCGCTTGAAGGGTACCATTTTGGAAGTACTGCCCCAGGCGGGCACT
CTGGAGATCGACTATGTGTCAACATCGCGTCCACCCTTTCGGAGCGGCCA
AGGCGCGCAGGCCGGAAGAACACATTGCATGAGTACAACGACGTTCTGCT
ACATGCTGAAAAAGATTGGACTGGGCGACGAGGAAGCTTGGACTGGTGGA
GATGAGGCCGATGTCGTGGATGCCGGAGGACCACCACACGCTGGCGACGA
AAAGGCCTCTAATAAAGAAGCTGGCGTTGAATGGAGCCGCGTGATTGATG
AAGCCATACGAAAGGCATGTCCTGCCAACAAGACCGTCTGCATTGCCAGC
GCCAGCGAGACGGCAATCTGTTCTGCCGCCACGACCGGAATCTATTGTAC
CCTCAAGACAGGGAAGGGGCGAAACTCCACGGGGACCAAATCGAATTCGT
CGAGATCGGCAACAGGCCTTTCCTTGACGGGCATGGATCTTCGGGCAACC
ATCGGAATCAACACCATGGCTTGCCGACTGGACGAGCTGATGGCGGACAA
GTGGTTTTCCATCGATCAGGTGTGCAGCACATACGATGAGACCCCAAGCA
AGGAGCCGCAATGTGAGTATCAGGTCGACGTGTACGACTACATGACCCTT
GTTGGCTGTCTGGAAGACCTTGCGCAAGCCTTTGTTATCAAGCGGGTGGG
GTGGTTGGCAGCCTGGAATCCTTGTCGTCCTGAAGGATATATGGAGCTCT
CGCTAGATATACGGGAGGAGCGTCAGGTGGCGAAGGTGGGGTTGGTTGGA
GGGAGAGGCAAAGCTGCTCGAGGCTGGTGGGAAAAGCTCTACGCTCTGCC
AACAGGTGGTGGCAGGTACGACACCCCCATCCCGGGATGGATGTTGCCGG
TAGTATGGAACACAGAAGAGGGGTTACCCCACAAGGGGGTCCTCACGTGC
ACGCATACTAGCAAAGCTGCTGGTCTCCGGCTCAACTGGATATTGCGAAC
GGCCCTCGCTCAGGTGGTCTCTCTAAGCGAAGCGCCCCCGGTATCCGCCC
TGATAGTTGGCAGAGAAGATCACTCTCGAACTACCGGAGAAGGGACCAAA
AGTGACAAGAACCCAACTATCACTGAGGCAACAGAGGGAACAGACCAGGT
TGCGGAAGATGAACCAGAGAATGTTGGTATAGCTGGAAATCGCTTGGATG
ACTTGTACGGAAAGTTTGATAGGGAGTTCGTAGACTCTCTCTGCAAGCAG
GCCGGCAGTGATTTTTTTCTCTATGGTGCTCACGAGAGAACCGACTGA back to topprotein sequence of EsuBft1070_8a-0001 >EsuBft1070_8 ID=EsuBft1070_8|Name=EsuBft1070_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=465bp
MEKLARQTGPLSVFDASQKGDWDNTRNETVNGKPYRLKGTILEVLPQAGT
LEIDYVSTSRPPFRSGQGAQAGRTHCMSTTTFCYMLKKIGLGDEEAWTGG
DEADVVDAGGPPHAGDEKASNKEAGVEWSRVIDEAIRKACPANKTVCIAS
ASETAICSAATTGIYCTLKTGKGRNSTGTKSNSSRSATGLSLTGMDLRAT
IGINTMACRLDELMADKWFSIDQVCSTYDETPSKEPQCEYQVDVYDYMTL
VGCLEDLAQAFVIKRVGWLAAWNPCRPEGYMELSLDIREERQVAKVGLVG
GRGKAARGWWEKLYALPTGGGRYDTPIPGWMLPVVWNTEEGLPHKGVLTC
THTSKAAGLRLNWILRTALAQVVSLSEAPPVSALIVGREDHSRTTGEGTK
SDKNPTITEATEGTDQVAEDEPENVGIAGNRLDDLYGKFDREFVDSLCKQ
AGSDFFLYGAHERTD back to topmRNA from alignment at Scaffold_475:177444..183863- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1070_8a-0001 ID=EsuBft1070_8a-0001|Name=EsuBft1070_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6420bp|location=Sequence derived from alignment at Scaffold_475:177444..183863- (Ectocarpus subulatus male Bft15b)
ATGGAAAAGCTAGCGCGTCAGACTGGGCCTCTGTCGGTGTTTGACGCATC
TCAGAAGGGGGACTGGGACAACACTCGGAATGAAACCGTGAACGGCAAGC
CTTACCGCTTGAAGGGTACCATTTTGGAAGTACTGCCCCAGGTGCGCGCG
ATTCTTGCCGTGTGGAACAGCTATCAACAGTGCTGTTCGGAGTAACTCAC
AACAGTAGCAGCAGCGAGATGTGTTGCCGCAGCTCGAGCGTCGTACACCG
CAAGCAAGCGTGCGAAAGACCTAGTGCACTCCAGTGTTAACCATCAATAT
TTGCCTCGGTTTTATGGCAGCCGATCCTTGGTTTCCCTAAGTTATTAACA
CCCGTACTGTTCGGGCAGCATCCACAATAGGCGCTACCCCGTCGTTGGCG
TTGCTCAATACTTCCGTTGCATGGGCCGTGAAGCGTACACTTTCCTTTTT
TTTTTCCAAAGTTTTTCCGTTTGCCGGAGGTGCTTCTATTTTGCGTGGCT
ATGGTTTCTGAAGCGTCGAACCATTGCATTATTGTTCGGACCGCGACGCC
GGCGCAGACTTCGGGACCCAGACAGGAACCGATAAATATCGTTATTGGTG
CAGTTCAAGTCCACTCCAACACGTTCACCCACGGAAACGAAACAAAAACA
ACGGGTAAAACCATGCTGGTGGATCCCCGTGCAATTGTCTGGGTGGATCG
ATCTTGAGGACCTCAGTCGTCCAAAGCGTACACAACGTCACCGTTCGACC
CGACCCCGACCTTGACAACCATTGAATTCGTTTGACGGACCCAAAATACA
TTGAAGCCAGGCGGGCACTCTGGAGATCGACTATGTGTCAACATCGCGTC
CACCCTTTCGGAGCGGCCAAGGCGCGCAGGCCGGAAGAACACATTGCATG
AGTACAACGACGTTCTGCTACATGCTGAAAAAGATTGGACTGGGCGACGA
GGAAGCTTGGACTGGTGGAGATGAGGCCGATGTCGTGGATGCCGGAGGAC
CACCACACGCTGGCGACGAAAAGGCCTCTAATAAAGAAGCTGGCGTTGAA
TGGAGCCGCGTGATTGATGAAGCCATACGAAAGGCATGTAATTTCACGCT
AAAGTAGACGAAGCGTATTCCGAGTAGAGCAACTTTGATCACGCTGGTGG
TGGGAGCGGTAATGTTCCTTCAAGCCGATTGGCAACGCTGTCATGGAGAA
AGAACGCTTGTTTTGCGGGCGATGTTGTTCAAAATGCACATGTGTGCGTG
CCATGATGTGTGCGTGCCATGCTCAACCACGAGCAAATGAACCTCCGTGC
TCCGTCAAACGTACGAACATCTAGGTGAAGTTGACTGGCGCTTCGGAACT
TTGCAATGTTGTTTTCGCCGCCCTTGCCAGTCACCGCCCCGCCCGCGAAC
TCGAAAGATGTTCGAATACCTGCACTTCCTCATGACCGGCGAAGGCCAGC
CGATGGGAAACAAGACCATCCCAACTAGGCCAAGTGCTGTGGACAAAATA
GCGCACGGGGCGGTCTCTAAACAGGTCATTATCCAATGAATGTTCGACTA
GGTGCATATGGGTCTGGAACACCACGTGCAACCCGATCCCCAACCCCACG
TTTGTGGTATATCCCAAAGAGAAGGTGGAGGGTTTCGACTAGCGAAACGG
TACCTGGGTGGGGTTTTCGGCGCGCAAGCAATGGGTCCTGCACGTTATTT
GGGGTTCGGCGTTGACATGATTATTGCTCGCTTGGTAGTCAAACAAAATT
GAGGATTGTTTTGACGTTTACAAGGTCTTCGGGGCTCGTGACTGTTCGAG
AATTCTCTGCGTGCCTGAGCAAAAGCTCTTACGTACGACCGGTGTCATTG
TGTGTGGCAGGTCCTGCCAACAAGACCGTCTGCATTGCCAGCGCCAGCGA
GACGGCAATCTGTTCTGCCGCCACGACCGGAATCTATTGTACCCTCAAGA
CAGGTATCCACCGTATCTCCAACAAGAAACTCTACACAAGTGCATGATGA
TGGGCTGAACGAGAAGGTCATCTCGCGCACGGGTACGCGTTTCGCCTGAG
GTAGAGGAGTTTTCTTGTACATGTTGGGTGTACGTGTTGGGTACACCACA
CCACGCACGCGCCTCGCGTCCTGCATGATGCCTTTTTCATGCCCAGGCAT
TTGTGATTCCCTTCATGTATCCGTTGGGACTGCTGTGATGCAGGGTGCTT
GACCGAAACCCGTCGCTATTTTTAGATGTCGTAGTATAGTGTTTCCGATT
TTGGTCGTGCTTAAGCACAAAACGATTGAACCGCACCAATGTGGCATGTT
GGAGATTTTGTAATTCCACATCCTGTCCAAGTCGGCCACGCAAATTTAGA
GTGCTCGCACACTCGCTTGCATTTCACCGTCGACGCACACGACGACTACA
TCGTGAGCAAACAACCGGTTTGTGGATGCCCGAAAATTGCACGTGGAGTG
ACGAGACCCTGCCAAGGATCCTGAGACAGTCTGTAGTGATCGATACGAAC
TTCCCAAAGAATCATAAATCGAAGAAGAATCCATGCTTGTCTCAACAATC
TTTTGTAGAAGCTCGATTGTCATTGTACCCTGGACGTTCTTGCTTCCTTC
CTTTTTTGGAACGCTAACAGGGAAGGGGCGAAACTCCACGGGGACCAAAT
CGAATTCGTCGAGATCGGCAACAGGCCTTTCCTTGACGGGCATGGATCTT
CGGGCAACCATCGGAATCAACACCATGGCTTGCCGACTGGACGAGCTGAT
GGCGGACAAGTGGTTTTCCATCGATCAGGTATGCGCCTATTGTCTAGAAT
CACTTCTTTGATCCTCTTGCGTCCTTTTGTGGCAGTTTCGTACCTGTGTG
CATCGCTTAGTCAAAGCCGTGTTGTCCTCGATTGTCTGCTCCTCAACGCC
GTCAGAATATGCGGAACGGAGTCGAGCGGAAAACATGTTGGCGAAAGCCT
GACCTTGTTGTGTCAGTTGATAGACCGAACAACGAGCATGAAATTAAGCC
GGGCCTTTCAGGCTCTCGAATACTTCAGCCGCACGCATTGTCTGCATCCT
GGCATGATTTGTCGCTTCGTTAAGCAGTGCCGCTTCTTACTGCTGGCGGT
AAAAGAAGCCTACGAAGGAGATGACTTCCTTCAGGACGTTCTCGTCGACT
TCGTCGTCTCGGTCTACCCCCGTATTGTGAGAATCGTAGGAGGCACATTG
CCATTTTCTGCCCCTGATTTAATATAGGAGTCATGAGCCGTTTCGTTCGG
ACATCAACATTTTCGTGAATCTCTGGTACCAACGCCCTCGTCGACTATAC
AAGCACAGCAGTGCAACCTCGCGTCGTTCCACCAGATAGAGCGGGAGTCG
TTGTGTTTTGTTTCAATGACAAGTCAGGATTATCGGAGAAATGAGACTGG
GGGGTGAATGAACAATTTGATTCGGAAGGGCATGCCACAGGTGTGCAGCA
CATACGATGAGACCCCAAGCAAGGAGCCGCAATGTGAGTATCAGGTAGAC
GTCAGATTTCAATGTGGTACAAATTACTGCAGGCACGTATATGCTCAAAC
AAATCGGCATTTCGCACGACTTTGTTTTCCAACCGGATTATCCTGTAGCT
GAGTTTTCCTGTCCAATATTTTCGGTAATACAAGGTGATGGTGGAGGAAT
CGAAGTGCTGAAAGCTCGTAACATATAGGGCGTGCTGTGCTCTGTAGCTT
GACCAGCCAGCGGCGTTCCGTCAAATTGTCCATTGTACAGGTCGACGTGT
ACGACTACATGACCCTTGTTGGCTGTCTGGAAGACCTTGCGCAAGCCTTT
GTTATCAAGCGGGTGGGGTGGTTGGCAGCCTGGAATCCTTGTCGTCCTGA
AGGATATATGGAGCTCTCGCTAGATATACGGGAGGAGCGTCAGGTGGCGA
AGGTGGGGTTGGTTGGAGGGGTACGCTCTGCTGTTCAAATGAGAATAATA
CCCTTCCACCTTGTTTTACAACCAACATATTCCCCGTTCCCTAGCGAATA
TTGCTTGGAGGATGTCTTCACCTAGGTCACTGGGCTCAAAGTGTCCAGTC
CTTGGTTTGCAGCGCTGCTCGGACGTATATCCCTCTAATATAGATGTGGA
TTTGTGACAAGGGGACATCGGTGGCCTCTGGATTACATTTTCCAACGAAG
GACATATCAAAACAGTTAGGCTTGAAGCAGATCCTCGCGTCGAGCGTTGG
CGTACAGAAAACCCGTTAGCAGGTCTCACTAACGGTCGAAGGAGAGACGC
TGAAAAGAGCCCGTTGAGTTTGTAGCGGTGCATGCCTAGACTCTTACACT
CAACGAGATAACACGAAACGACGCAAGTGTACTGCAATATTGTGTCTTGT
GCACAACGTCTGGCGACCACAGCGGCCGTGCCAGCCCCGATGTCAAAATG
GCAGGGTCGTATGTATTTTTGAGTTTGGGAACAGCAGCAGGCATTCCGCT
AAATAGCGTTGTTGAGAGAATTGTTAGGTACAGCGAAACCCTTGCAGCGG
CGTCAGAGAAACGACGGGGTCCTCGAGATATATATGTACGATGCTTCAGA
ACAACTGCAAGATCGGGATCATTTCTGATTGTGCCCTCCTCTGTGTTGTC
GTGGAACCAAGCTGAGATGAGGTGAAGCCGAAAGCAGCGAAAGCTCTCTA
GACTATACTAGCTATGAATGGTTATTTCTATATTGCGTCGGCCGATTATT
TGGATGCATGCACGCCCTCTTCAACTCCCGCCCAATCCAGGGCTAGATCC
ACGCGGTTCAGGAACCCTGCCAAAATTCTAGTCCCAGCGTCAAGCCTTTG
CACTTGGAATGTCCTTAACATCGTAAGATTTCGCGTAATGCCACGCATCA
CTTGTTTCCGCTAGCCGTGCGCTACGTCATCGAGTGCTACCAGAACGTTG
CGTTTGATACGGCCGCACCCACCCGTTGCTGCCTCGTTTGGACGTAGATG
CTGATACACCTGGTGTTCGATCAACAAGGCGAGCTCTGGTCATCATCGTC
ATTTCGGTGGTCAATGTGAGCATCAACAGGCCTTGTTGTTTACATGCATG
TCAAGGACACCCGACCTCGTCCGGCAAGGATGCGAGGGCATGCTTTGGAA
ACCGAGGGTTAGGGTTAGGGCTAGGGTTACTGTAGCAGTTTTGCACGTTG
CGGCACCTAACGTCTCTTGCGATGATATCAACAGAGAGGCAAAGCTGCTC
GAGGCTGGTGGGAAAAGCTCTACGCTCTGCCAACAGGTGGTGGCAGGTGA
ATACGGCAGGCTAACATCACGTTTCACATTGCTTCGTGGCTGACACGACA
TGTCGCAGGTACGACACCCCCATCCCGGGATGGATGTTGCCGGTAGTATG
GAACACAGAAGAGGGGTTACCCCACAAGGGGGTCCTCACGTGCACGCATA
CTAGCAAAGCTGCTGGTCTCCGGCTCAACTGGATATTGCGAACGGCCCTC
GCTCAGGTGATTATTTCCCCGTCAAGAAGAGAAGAAACATGACAGCTTCA
CTGGGGCCGCGAGGGCGGTCACCATGCAATAATTCCTTGAGACATTGAAC
AGTACGCGCCCTGCTGGGAGGAAAGAGCCCCAGAGTCAATAATATGTTCA
TCTTCCTATAGTCTGAACAAGTATGTGATAAGATGGCCTGAGCGCAGGTG
CTTATCGTGGGAAGATAAGGGATTGGGGTCACGTCTCGTTCTGCCAGTAC
CATGAAGTCAGCACTTGGTACCTTGGCATCGTTGTGGGCACTTTCTCTGG
ATACATATTCCGTGATCGTTCCGCCAGTACTAAGAGCGTATCAACAAGGT
ATTTCTGGCATCTCGCACAAGGAATTTGTGGGCATTGGTAACTAAATATT
CGGCAGGTTGGGACACTTGCGTCCTTTGGGATACTGTCAATACCGCAACC
ACCACAAGTGTCTAACTTTGGGGCTTGGGTCAGGGCTAGCACCACTGTAG
GGCGCAAATGGGTCCGAGATACTTGGATACCGAGCAGAATACCCACAAAA
TTTTTCCTTTCGTCACGTCGTCGAGAAATCTGGAGGTTTTTGCAGAAATG
AAAACAACAAATGCCCCATGACTGTTGAACACAATTGCTTATTGAGGCCA
CTTGTTCTCGCGCGGGGCCCTCAAACTGCATGCAGGTGGTCTCTCTAAGC
GAAGCGCCCCCGGTATCCGCCCTGATAGTTGGCAGAGAAGATCACTCTCG
AACTACCGGAGAAGGGACCAAAAGTGACAAGAACCCAACTATCACTGAGG
CAACAGAGGGAACAGACCAGGTTGCGGAAGATGAACCAGAGAATGTTGGT
ATAGCTGGAAATCGCTTGGATGACTTGTACGGAAAGTTTGATAGGGAGTT
CGTAGACTCTCTCTGCAAGCAGGCCGGCAGTGATTTTTTTCTCTATGGTG
CTCACGAGAGAACCGACTGA back to topCoding sequence (CDS) from alignment at Scaffold_475:177444..183863- >EsuBft1070_8a-0001 ID=EsuBft1070_8a-0001|Name=EsuBft1070_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1398bp|location=Sequence derived from alignment at Scaffold_475:177444..183863- (Ectocarpus subulatus male Bft15b)
ATGGAAAAGCTAGCGCGTCAGACTGGGCCTCTGTCGGTGTTTGACGCATC
TCAGAAGGGGGACTGGGACAACACTCGGAATGAAACCGTGAACGGCAAGC
CTTACCGCTTGAAGGGTACCATTTTGGAAGTACTGCCCCAGGCGGGCACT
CTGGAGATCGACTATGTGTCAACATCGCGTCCACCCTTTCGGAGCGGCCA
AGGCGCGCAGGCCGGAAGAACACATTGCATGAGTACAACGACGTTCTGCT
ACATGCTGAAAAAGATTGGACTGGGCGACGAGGAAGCTTGGACTGGTGGA
GATGAGGCCGATGTCGTGGATGCCGGAGGACCACCACACGCTGGCGACGA
AAAGGCCTCTAATAAAGAAGCTGGCGTTGAATGGAGCCGCGTGATTGATG
AAGCCATACGAAAGGCATGTCCTGCCAACAAGACCGTCTGCATTGCCAGC
GCCAGCGAGACGGCAATCTGTTCTGCCGCCACGACCGGAATCTATTGTAC
CCTCAAGACAGGGAAGGGGCGAAACTCCACGGGGACCAAATCGAATTCGT
CGAGATCGGCAACAGGCCTTTCCTTGACGGGCATGGATCTTCGGGCAACC
ATCGGAATCAACACCATGGCTTGCCGACTGGACGAGCTGATGGCGGACAA
GTGGTTTTCCATCGATCAGGTGTGCAGCACATACGATGAGACCCCAAGCA
AGGAGCCGCAATGTGAGTATCAGGTCGACGTGTACGACTACATGACCCTT
GTTGGCTGTCTGGAAGACCTTGCGCAAGCCTTTGTTATCAAGCGGGTGGG
GTGGTTGGCAGCCTGGAATCCTTGTCGTCCTGAAGGATATATGGAGCTCT
CGCTAGATATACGGGAGGAGCGTCAGGTGGCGAAGGTGGGGTTGGTTGGA
GGGAGAGGCAAAGCTGCTCGAGGCTGGTGGGAAAAGCTCTACGCTCTGCC
AACAGGTGGTGGCAGGTACGACACCCCCATCCCGGGATGGATGTTGCCGG
TAGTATGGAACACAGAAGAGGGGTTACCCCACAAGGGGGTCCTCACGTGC
ACGCATACTAGCAAAGCTGCTGGTCTCCGGCTCAACTGGATATTGCGAAC
GGCCCTCGCTCAGGTGGTCTCTCTAAGCGAAGCGCCCCCGGTATCCGCCC
TGATAGTTGGCAGAGAAGATCACTCTCGAACTACCGGAGAAGGGACCAAA
AGTGACAAGAACCCAACTATCACTGAGGCAACAGAGGGAACAGACCAGGT
TGCGGAAGATGAACCAGAGAATGTTGGTATAGCTGGAAATCGCTTGGATG
ACTTGTACGGAAAGTTTGATAGGGAGTTCGTAGACTCTCTCTGCAAGCAG
GCCGGCAGTGATTTTTTTCTCTATGGTGCTCACGAGAGAACCGACTGA back to top
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