EsuBft1070_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1070_7a-0001
Unique NameEsuBft1070_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_475contigScaffold_475:190850..191596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0Q5
ProteomeIdEsuBft1070_7
Protein domainsPF13516
Protein domainsSSF52047
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7G0Q5|-
Length33
Hectar predicted targeting categoryother localisation
Evalue3.22e-37
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat calcium binding protein
Ec32 orthologEc-08_000150.1
Date last modified2016-06-13
Date creation2016-06-13
Descriptioninterleukin-8 biosynthetic process
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1070_7aEsuBft1070_7aEctocarpus subulatus male Bft15bgeneScaffold_475 190850..191596 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1070_7a-0001-exonEsuBft1070_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_475 190850..191119 -
EsuBft1070_7a-0001-exonagat-exon-75507Ectocarpus subulatus male Bft15bexonScaffold_475 191537..191596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1070_7a-0001-cdsEsuBft1070_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_475 190850..191119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1070_7a-0001EsuBft1070_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_475 190850..191596 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1070_7a-0001 ID=EsuBft1070_7a-0001|Name=EsuBft1070_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=330bp|location=Sequence derived from alignment at Scaffold_475:190850..191596- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGAACAAGACACTCACCTACCTCGACCTCAGCCACAACCTCAT
CGGCAGTCAGGTGTTGATTAGACATGTTCCCGTCGATTTCGTCCAGGAAA
GCATCAACTACGTCCGGCCAGAGTTCTACACGGGGGCCGAGGCGTTGGCC
GACTGGGTATCGACCGGAAGCTGCCCTCTCAAGTACCTTGATGTTTCGTG
GAACACCATCAGGCTCGACTCGGCTGTTTATTTTGGCAATGCCGTTGCCT
GTGAGACGCTTCGTACATGGTCAGAGCATCACTACCGTAACGACATGAAT
CGCTTGTGGAAGTCAATCGACAAGTACTAG
back to top

protein sequence of EsuBft1070_7a-0001

>EsuBft1070_7 ID=EsuBft1070_7|Name=EsuBft1070_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MKANKTLTYLDLSHNLIGSQVLIRHVPVDFVQESINYVRPEFYTGAEALA
DWVSTGSCPLKYLDVSWNTIRLDSAVYFGNAVACETLRTWSEHHYRNDMN
RLWKSIDKY
back to top

mRNA from alignment at Scaffold_475:190850..191596-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1070_7a-0001 ID=EsuBft1070_7a-0001|Name=EsuBft1070_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=747bp|location=Sequence derived from alignment at Scaffold_475:190850..191596- (Ectocarpus subulatus male Bft15b)
ATGAAGGCGAACAAGACACTCACCTACCTCGACCTCAGCCACAACCTCAT
CGGCAGTCAGGTAAGGGGCCGGCCATCAAACCGTTGCAAACGTCTCTCAC
GGGAAGACAACGCATAACACCTGGCAAACCCCCCTGTTCGCGAATAGGAA
TGTGCGCTTGAGAGTTCGAGGCCCTCCTTGATACACACTCCGCTTTGCAT
CGCGTGCGTCCACGACACTTTCCGCTTGGTCCAACCCGGCGGTCGATGTG
GATACCACACGATACAGAGGTCAGTACGTTTGACGCGAAGGCATCAGGGT
CGCCACCAACACCAATAGAACGAACCCTTGAGCAACAACAGCCAGCCAAA
CCGCACAGGTTTATTGGCGTCTAGAATATTTCTTCGAGAACCGAGCGTGC
GACCGCCGGTAGGCCTATGGTGAAAGAACGGCAGCATTATTTGTATATGG
GCGTCTCGACGGCAAAGCACCCAGCAGGTGTTGATTAGACATGTTCCCGT
CGATTTCGTCCAGGAAAGCATCAACTACGTCCGGCCAGAGTTCTACACGG
GGGCCGAGGCGTTGGCCGACTGGGTATCGACCGGAAGCTGCCCTCTCAAG
TACCTTGATGTTTCGTGGAACACCATCAGGCTCGACTCGGCTGTTTATTT
TGGCAATGCCGTTGCCTGTGAGACGCTTCGTACATGGTCAGAGCATCACT
ACCGTAACGACATGAATCGCTTGTGGAAGTCAATCGACAAGTACTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_475:190850..191596-

>EsuBft1070_7a-0001 ID=EsuBft1070_7a-0001|Name=EsuBft1070_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_475:190850..191596- (Ectocarpus subulatus male Bft15b)
ATGAAGGCGAACAAGACACTCACCTACCTCGACCTCAGCCACAACCTCAT
CGGCAGTCAGGTGTTGATTAGACATGTTCCCGTCGATTTCGTCCAGGAAA
GCATCAACTACGTCCGGCCAGAGTTCTACACGGGGGCCGAGGCGTTGGCC
GACTGGGTATCGACCGGAAGCTGCCCTCTCAAGTACCTTGATGTTTCGTG
GAACACCATCAGGCTCGACTCGGCTGTTTATTTTGGCAATGCCGTTGCCT
GTGAGACGCTTCGTACATGGTCAGAGCATCACTACCGTAACGACATGAAT
CGCTTGTGGAAGTCAATCGACAAGTACTAG
back to top