EsuBft1068_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1068_6a-0001
Unique NameEsuBft1068_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_451contigScaffold_451:1529046..1533735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LJP7
ProteomeIdEsuBft1068_6
Protein domainsIPR000571
Protein domainsPTHR14089
Ownerapollo_admin@sb-roscoff.fr
Notepre-mrna-splicing factor cwc2 os:dictyostelium discoideum gn:cwc2 pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length498
Hectar predicted targeting categoryother localisation
Evalue1.21e-85
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-17_002850.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCWC2
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045787,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0071006,GO:0071007,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
DescriptionRNA binding
COG categoryH
Cross References
External references for this mRNA
DatabaseAccession
GO0003723
GO0000398
GO0046872
GO0005684
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_6aEsuBft1068_6aEctocarpus subulatus male Bft15bgeneScaffold_451 1529046..1533735 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_6a-0001-exonagat-exon-41720Ectocarpus subulatus male Bft15bexonScaffold_451 1529046..1529251 -
EsuBft1068_6a-0001-exonagat-exon-41719Ectocarpus subulatus male Bft15bexonScaffold_451 1532397..1532489 -
EsuBft1068_6a-0001-exonEsuBft1068_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_451 1533537..1533735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_6a-0001-cdsEsuBft1068_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_451 1529046..1529251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1068_6a-0001EsuBft1068_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_451 1529046..1533735 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1068_6a-0001 ID=EsuBft1068_6a-0001|Name=EsuBft1068_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_451:1529046..1533735- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCTCGCCCCATGGTCCAACAGACGCCCTCGACTCTTATCTGCCG
TTTCAGGTACGGCCCCCGGAAGAGGTGGAGGGGAAAGGACAAGGCTCCGT
CTCGGTGCGATCCTGACGTCGACGCTGGGGCCACCCGCGGAAGCGAGGCG
GGGGCGCTCGAGTTCTGCGTTTTTTTCGCGAGAGGGGCTTGCGCGCGGGG
CTATAGCTGCCACAAGCTCCACTTCGTCCCTACACCGGAGGATGACGCCC
GCGAGGACAACATGCATGACTGTTTCGGACGAGAGCGATCGGGGGTGGAA
GACGAGGACCGTGATGGTGCCGGGTGCTTCTTGAAGGAGAACCGAACCCT
GTGGGTGGGCGGGGTCCCCGTGTTCGACGAGGCGTCGGCGAGGGAGAGGG
TGCGTCAAAACTTCGGGCCTTTGGGGCGCATCAGCTCCGTGCGGCTGGTG
AAGAGCAAGGTGAGTCTGCTCATGTTGGACGGCTGCAAAATATCTTGA
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protein sequence of EsuBft1068_6a-0001

>EsuBft1068_6 ID=EsuBft1068_6|Name=EsuBft1068_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MPARPMVQQTPSTLICRFRYGPRKRWRGKDKAPSRCDPDVDAGATRGSEA
GALEFCVFFARGACARGYSCHKLHFVPTPEDDAREDNMHDCFGRERSGVE
DEDRDGAGCFLKENRTLWVGGVPVFDEASARERVRQNFGPLGRISSVRLV
KSKVSLLMLDGCKIS
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mRNA from alignment at Scaffold_451:1529046..1533735-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1068_6a-0001 ID=EsuBft1068_6a-0001|Name=EsuBft1068_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4690bp|location=Sequence derived from alignment at Scaffold_451:1529046..1533735- (Ectocarpus subulatus male Bft15b)
ATGCCCGCTCGCCCCATGGTCCAACAGACGCCCTCGACTCTTATCTGCCG
TTTCAGGTACGGCCCCCGGAAGAGGTGGAGGGGAAAGGACAAGGCTCCGT
CTCGGTGCGATCCTGACGTCGACGCTGGGGCCACCCGCGGAAGCGAGGCG
GGGGCGCTCGAGTTCTGCGTTTTTTTCGCGAGAGGGGCTTGCGCGCGGGG
TGCGTTTTGCTTGGCTTCGTGGAGAGAAGGGCGGGGGGGGGGGGGGGGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACCGTGTAACTGCCTCGAGGGTGCTTGACCATTTTAACACAACGTGGT
GCGATCATCCCCCTTGCGCGGAGTGAGGGTTCTCGACCCCGCACAACATG
ATCTACTCGACCACCACTATGGTTATTCCGCCTACACATCTGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAACGAGGGAGAG
ACAGCGGGGGGACGAGCTTGGATGGGCGGTTGAGAATTTCATACAAAGTG
GCGTAGCACTTGTAGAATTTTCAACACCAACTGCAAACGTTGGTAGAGGG
GGAGAGCGAGGGGGAGATTAACTGGGATGGTAGGCAAACGCGTGTATGTA
GCAAGTTTGGTGTTTTTCAATGCTAACTGAGCATCATTGTCGTGGGGTTG
TACAAAATTGTGAAGCTCATGGAGCGAACCTCTTCTCAAGGTACAGGTGT
GTTTGACTCAGATCGCTTGAAAGATTGGATGTGAAGCAACACACCGAGCA
CATTTCCATGCACGACACGAAACACGATACATGTAAGTTGCTGGTTACCG
CACTTATCCAACCAGTCCCTCCCCCCCCGCGCCAATAAAATAGGTAGGCT
GGGGCATGTTTGAGCCACCGTTGGCGAAGGTTGGAAGGAACGCTTGGCCA
TCGGTGATCGGGTCTGAAGGAACAATGCTTTGTCCTCTCGAGAGGACGCG
TGGTCAATTGTCTAACAACCTAGGCGTGCAAAACATGATTCCGCCCCCCC
CCTCATACCCATCGACACCTTCCCAAAACCTGCTCGCCATTCACAGGCTA
TAGCTGCCACAAGCTCCACTTCGTCCCTACACCGGAGGATGACGCCCGCG
AGGACAACATGCATGACTGTTTCGGACGAGAGCGATCGGGTGCGTTCTTT
TAGGTTGTTGTTGTTGCCTAAATCATTCGTATTTTTTTCCGCCCCTCTCG
AGGGNGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGATGTCCAGA
GGTTCAGTAGGAAGGGAGAAGTTGTCATGGTGGGCGATTTCAACTCCAGA
GTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGGCAGCACGGAGAAGA
CAAAGTGAATGACAACGGAGTGAGGATGCTTGAATTCTTGGGAAGCAACG
AGCTGGTGGTGTTGGACGTGAGGAGGGAATACGATAAGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCAGTTTGCAATGAATACTCGATCCTCGAC
TACATCCTGGTAGATGGGGGCAGCACGCAGATCCCAGAGATGCACGTAAG
TGTGATAGATATAGGTTCCACCGACCACTTCCTCATATGGGCAAACATTG
ACCGATATAGAAAGATGAAGAGTAAGAAACAGAGGAAAGTGTTCCGATGG
AAAGTAGAGCGTGTGGGAGACGATGGGACACGGGATGAATTCCAGAAGGG
GCTGGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTGAGAAGCGTCGAAG
ACGGACAGGTAGACGTACAAGCAGCAGGTGACAGGGTGATTGAAGGGTGG
GAGTCCATCGTGAACGCAACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGT
ACGATGTGGGGTATCGGTTAAGTGGTGGGACGACGAGCTTAAAGAAGAAA
CAGGGGAGCGTAGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCTGAG
GAGAGTTGGGAAAAGTACAGGGCCAAGAGAAAACAGGTGAAGGGACTAGT
GAAAAAGAAGAAAAAGTGTATTTGGGACGAAGTAGTGCAGAAGGCCAACG
AAGGCCTGGAGGGGAACGTCAAGCAGATGTGGGAAGGGAATAGGGGNGAG
CTGAAAGAAGAAATAAGGGAACGTAGAAAAGTCTTCAAGCAGTACCTGAG
TGAGGCGTCTGAGGAGAGTTGGGAAAAGTACAGGGCCAAGAGAAAACAGG
TGAAGGGACTTGTGAGAAAGAAGAAAAAGTGTATTTGGGACGAAGTAGTG
CAGAAGGCCAACGGAGGCCTGGAGGGAAACGTCAAGCAGATGTGGGAAGG
GATTAGTGGAATGGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAG
AAACTTTGCGAGGTGTGAACGGTGGATTAGTCAGCAGTGGGAAGGGAAAA
AGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGGGTGCCCGCGGAGAA
TGAAGCTNGATGATCGAGCTGATGGTACTGCTATACAATTGGGAGTGGAA
AAACGAGTGTACGCCAAGAAGATGGAAGGAAGGAGTGGTTGTGAACTTGT
TTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACACTG
TTGAAAACAGTAGGAAAAGTGTTATGTAAGCTGCTGAACGATAGGATAGT
GGGAGTATTGGAGAAGGAACATAGCATTCGTGAAGGCCAGGCGGGTTTCC
GCAGGAAGAGGGGGTGCGTAGACCAAGCANAGGGGCTCGACATCGACGAA
GATGAAACGCTGGAAACGGAGGGTCTAAAGGGCTTCAAGGAGAAGATATC
TGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTAAAGAAAGAAACCAAGG
AAAAGGAGGGTCCAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTC
AAGGATTACCTACACCAATGGATGCAGGAACAAAGCGTAAGGTCAAATTC
AGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATATGAAGGT
AGACGAGGAAGACGACGAGTTCAAGTGTGATTGCGGCTTCGAATGCGAAG
ACCGTGTGCATGTAGTTGCGGAATGTCCCGTTGTACAAGAAGGAGAGGGA
AGTGTACGTGACTGAGCTGGGAAAAATAGATGGGACGCACAGGGAGATGT
TTGAGGCATGGGGTAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGG
AAGTGGGTTGGAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGG
GAAGACATTTTTGAGGCACCTTTGGCAAAGTAGAAAGGAACGATTGGCCA
TCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTG
GTCAATGGTCTAACCGCTAAGGCATGCAAAACATAAGAGTACGCCNCCCC
CCCCCCCCCCCCCACCCCCCTCTCAAGGCAGTGTTATTCTCATCCTTTCG
CTTTTTGTACAGTCTGGTATCTCTACAAAGACTGCAGGGCTCGAATCCAG
CGTTGAGAGGAAGAAAACTCTCTCCGCGGCACGCCTCCCTTCCTTTCCAT
GGGAAAGCTGTCTAACCCCCCTGCCAAAAGAATACGAAGAAGTATTCACC
AACACAACGCTATCGATTTTACGAGGAAAACTCACACCTGCCCTGAGACT
CGTACCCACACCTGCCCTGAGACTCGAACTCACTCCTGCCCTGAGACCCG
AACTCGAGAGCTGCGGCCACCAAAAAAGTTGACGAGGCTGCACGCCGACT
AGAGCGCGGGGGGGGGGGCGATCGGTACCTTCAGGGACGTGTGGCCTTGG
CCTTCTGGTCGAGCAGAATCTTATTGCGGGATTTCCTTGCGGGGGGCGGA
AGGGCCACAAACATATTTGAACTGTTGGGACCAGGCCGTCAGGATTGTCG
TTGACTCCTTGGGCGGGGACTTGCTTGTTTGCTGCTGCTTCCCAGGCCGT
CAAGAATGTCGCTAACGGCTTGCTTGCTTGCTGCTTCTGCTGCTGCTGCT
GCTTCTACTGCTGGTGCTGCTGGTGCTGGTACTGGTGCTGCTGGTGCTGG
TGCTGCTTCTGCTGGTGCTGCTGCTTCTGCTGGTGCTGCTGCCGCTGCTG
CTGTTCCTCCTCCTGCTGCTGCTGCCACTGCCAGGGGTGGAAGACGAGGA
CCGTGATGGTGCCGGGTGCTTCTTGAAGGAGAACCGAACCCTGTGGGTGG
GCGGGGTCCCCGTGTTCGACGAGGCGTCGGCGAGGGAGAGGGTGCGTCAA
AACTTCGGGCCTTTGGGGCGCATCAGCTCCGTGCGGCTGGTGAAGAGCAA
GGTGAGTCTGCTCATGTTGGACGGCTGCAAAATATCTTGA
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Coding sequence (CDS) from alignment at Scaffold_451:1529046..1533735-

>EsuBft1068_6a-0001 ID=EsuBft1068_6a-0001|Name=EsuBft1068_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_451:1529046..1533735- (Ectocarpus subulatus male Bft15b)
ATGCCCGCTCGCCCCATGGTCCAACAGACGCCCTCGACTCTTATCTGCCG
TTTCAGGTACGGCCCCCGGAAGAGGTGGAGGGGAAAGGACAAGGCTCCGT
CTCGGTGCGATCCTGACGTCGACGCTGGGGCCACCCGCGGAAGCGAGGCG
GGGGCGCTCGAGTTCTGCGTTTTTTTCGCGAGAGGGGCTTGCGCGCGGGG
CTATAGCTGCCACAAGCTCCACTTCGTCCCTACACCGGAGGATGACGCCC
GCGAGGACAACATGCATGACTGTTTCGGACGAGAGCGATCGGGGGTGGAA
GACGAGGACCGTGATGGTGCCGGGTGCTTCTTGAAGGAGAACCGAACCCT
GTGGGTGGGCGGGGTCCCCGTGTTCGACGAGGCGTCGGCGAGGGAGAGGG
TGCGTCAAAACTTCGGGCCTTTGGGGCGCATCAGCTCCGTGCGGCTGGTG
AAGAGCAAGGTGAGTCTGCTCATGTTGGACGGCTGCAAAATATCTTGA
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