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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 946362.XP_004995507.1 |
| ProteomeId | EsuBft1068_4 |
| Protein domains | SSF56672 |
| Protein domains | G3DSA |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon opus os:drosophila melanogaster gn:pol pe:3 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 33154|Opisthokonta |
| Length | 3052 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.34e-26 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | retrotransposable element Tf2 155 kDa protein type 1-like |
| COG category | G |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1068_4a-0001 ID=EsuBft1068_4a-0001|Name=EsuBft1068_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3052bp|location=Sequence derived from alignment at Scaffold_451:1510142..1514547+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCTGTAGCGTTCTGCCCCATATTGCAGAATGCATGACCACCTGGGGGG TAGCTCCGTCTTCTCGGTGCTCGACTTGGTGAGCGGCTTCTACCAAGCCG CGATCCACGAGGGTTCCATCCCCTTAACGGCCATCGTGACGACTACGGGG TTGTACGAATTCGTTCGAGTCCCCATGGGGACGAGTGGTGCGCCCAGCCA CTTCCAGGTGTGTGTGCAGTTGTATCTGGATGATATCGTGGTGCACTCAA AATCCACAGCAGAGCATGTGGTGCATTTCGAGAAGTTGTTGGAACGGTTG CGCATCCACAATCTGAAACTCGCTCCCAAGAAAGCGAATGTGGGTGCCGC CGAAGTGGAATTTTTGGGCCCCAAGTGGCCTCGCGCCTGGGTGTGGCCAC TCGAGTGCGGGGTCTCAACGAGGTATAAAAAAAAGGGCAAGGAATTTCGG TTCACGACTCAACACGAAGAAACCACTAGAGCGATTCTCAAAACGTTGAT GAGCACGACAACATTGGCGTTCCCTGAATATGAGGCTGCCATCAATGGCT CCCGCCCGTTTCAGTCATCGTCCGATGCGTCTGTTCATGTTTTTGGGGCC GTTCTGGAACAGCAACAGATTAGTGGCACAATGCGTCCTCTCGTATACGT CAGTCGATCAACTCCCCCTAGCGAACGCAACTGGGACACGACTGGCCTAG AAATGGGGGCGTTGGTTTGGGCTGTCAAAAAGCTCCGAGACCAGTGGATC TGGCTGTCCGATCTCGTCAACGCGTCGTCAGTACCGTCAGGTGTTCTGCT CCACGCGTGCTCGGTATTCCCGGCTACGCCGATCTTGCCGGTCTCCACCC GCTCCACTGGAGTCGTGCCTCGGTCACCTCGTGTCCGAGCGGGCCGTCGT CCTTCCTGGAAGGTTCGAGAACGGGAGGAGGCACCTGAGCCCGTCGCTGC CACCGCTGTGCCTGCTAGCGACGGTGCTTCGGCCGCACGACCAGCGCGTC GTCGTGCCGCCGCCCGTGGTCCGACACCGCCGTCCCGAACGGGCCCCGCG GAGGACACACCGGCTCCTAGCGCGGCCGGTCGCCGTCACCGGCGCCAGAG ACCGCCTCCCCCAGCCGACCCCGTAGTGGAACAACCGGCTCCTCGCGGGG CCGGTCGTCGCACCCGGCGTCCCGCCGCGCCGACGCCCACACGACTGCCA CGGCACCTGAGGAGCCCCGTTATCGTCCACCGAGGTCGCGCCGAGACTCA GCTTCGACATTTGAGGGGCCCCGAGACCGACCTCGAGTGGGCCGCCGAGC AAGCGCGAGACCCCCTGGCGTCTTACGTCATCAAGTACGTGGGTGATTCT GACTCTTTTAGCTTTCCTGATGTGGGCGATTGCATTGGGGATGAGGATAC CATCACTCTTAAAATGATTCAGAAGTTGGCGGACAAGTGCACACTCGTGA CTTTGCCTCGCTCCGGACCGGTAGGGGCCAAAGACGCCCACCACGTGCTC CTGATAAAGAAACCGTCCGAAGCGCCTACATCTCGCGCCCAGCGACACAG CGGCGGGGTGTGCCTTAAAGCTAGCCGCCGATTATTGTACGCGTTGGGGA TGTCAGGTGTATTTGTTGTCGGATAGAGGTGGCGAGTTTACGGAGGCTGT CGCGCGTGATGTGTACCGATTGCTTGGGGACAAGAAACGGTTTACCAGCT CATTCCACCCTCAAACCAACGGGCGCGTCGAAAGATTGAACCATTCGGTC TGCCAGATGTTGTCTCACGTGATCAGCGCCCAACAAACCGATTGGGATGA CCATCTCTTGCCGCGTGTGTGCGCTCACAACAATCACGTGAGCAAGGCTA CCGGTCTTGCGCCCATGGAAGTACATATTGGCCGGTATCCTCGTTTACCG ATGACGGTTCTTGGGTCACAGAAGGTGGTTTCTGGTATGCAATCGAACAA GCGGGATGATCTAGAATACCTCCAGCTCATGAATACCGACAAGCGAAGCC TACGAGCTAGTGGTTGGAAGAGACAGGCTCACGAAAGAAAAACACCGAGC ACGCAACGAAGATCTAGACAACCTAGATACGAAGCGGCCGATTTTCCACG CGGGCACGTGGGTGTGGTGCTACGATCCTCAGGACACCCTCCGCACAGCG AATGGCGATAAAACAGCTTCTGCCAATAGGATTAAAGCGAAACTCGCCAA CCTGTGGACAGGACGGTATATAGTGCTTGCTGGCGGGCCCTGTCGCTTTA ACGACATGAAAGTTGGGTTCAAGTTGCTGTATCTGGATTTACCGCACGAC ACACAGGCCAAATCCAACCGTGTCTCAGTGTTGCGTTGTAAGCGTTGCCA TCGTGCGGACGAACCTGAGGAAATCCCCGACTTTTTACCTTGGAAAATTT GTTCGTACGTCCTGCATAAAAATGCGGACATGGCGCCTCCCTTTTACCTC ACCGCGGATGACGTGTGGGAATAGAGCTTGACGTACAACGTGCACAGCCG ACCGCTATCACCGGTCACCGTATCAGTTGAGGTCCAGGGAGTTCCATCGC GGTACAATACGAAACGCGTTGGCGCGGACACCGCCAGCCCACTTGGGAAT CTGCAGCAAACATCCAGCAGTATGGTGGTTTTGTCGTATTGGGTGGGCAG TACAGTGCGTCAGGTAGGAGTCGACAGTAAAGTGCACCGTGACTATAACA AGCTTGCCGCGCACCGCGCGCAAGCTCGCTCGTAATTTCCTTTATCTGCC GCCAGGGTACGCGTTTCTGGCGACGTCGGAGCGTGGGCCGGCCTTGCTGT CAGCGGAGATGAAAGGAGCGCATGTTTACGTGCGGACGAAGCAGGAGGGC TGGCAGCTGGGAGTGGTACATCAGGTTTCGAGGGCGCGGGAGGAGGACCT GCCGTACAAGGTCAACTTCGTCGACCTCGAGCGGCGTTTCAACGTGTCGC TGTCGCCGACAAAGTATTGTACGGCGGTGGATGGTCCGCCCGGATCGTGG TGTTTTCTTGTGCACATGCGGTCCGGGAGCGTCCGGCGGAACGGGACCTG AG back to topprotein sequence of EsuBft1068_4a-0001 >EsuBft1068_4 ID=EsuBft1068_4|Name=EsuBft1068_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=531bp
MHDHLGGSSVFSVLDLVSGFYQAAIHEGSIPLTAIVTTTGLYEFVRVPMG TSGAPSHFQVCVQLYLDDIVVHSKSTAEHVVHFEKLLERLRIHNLKLAPK KANVGAAEVEFLGPKWPRAWVWPLECGVSTRYKKKGKEFRFTTQHEETTR AILKTLMSTTTLAFPEYEAAINGSRPFQSSSDASVHVFGAVLEQQQISGT MRPLVYVSRSTPPSERNWDTTGLEMGALVWAVKKLRDQWIWLSDLVNASS VPSGVLLHACSVFPATPILPVSTRSTGVVPRSPRVRAGRRPSWKVREREE APEPVAATAVPASDGASAARPARRRAAARGPTPPSRTGPAEDTPAPSAAG RRHRRQRPPPPADPVVEQPAPRGAGRRTRRPAAPTPTRLPRHLRSPVIVH RGRAETQLRHLRGPETDLEWAAEQARDPLASYVIKYVGDSDSFSFPDVGD CIGDEDTITLKMIQKLADKCTLVTLPRSGPVGAKDAHHVLLIKKPSEAPT SRAQRHSGGVCLKASRRLLYALGMSGVFVVG back to topmRNA from alignment at Scaffold_451:1510142..1514547+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1068_4a-0001 ID=EsuBft1068_4a-0001|Name=EsuBft1068_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4406bp|location=Sequence derived from alignment at Scaffold_451:1510142..1514547+ (Ectocarpus subulatus male Bft15b) CCCCTGTAGCGTTCTGCCCCATATTGCAGAATGCATGACCACCTGGGGGG
TAGCTCCGTCTTCTCGGTGCTCGACTTGGTGAGCGGCTTCTACCAAGCCG
CGATCCACGAGGGTTCCATCCCCTTAACGGCCATCGTGACGACTACGGGG
TTGTACGAATTCGTTCGAGTCCCCATGGGGACGAGTGGTGCGCCCAGCCA
CTTCCAGGTGTGTGTGCAGTTGTATCTGGATGATATCGTGGTGCACTCAA
AATCCACAGCAGAGCATGTGGTGCATTTCGAGAAGTTGTTGGAACGGTTG
CGCATCCACAATCTGAAACTCGCTCCCAAGAAAGCGAATGTGGGTGCCGC
CGAAGTGGAATTTTTGGGCCCCAAGTGGCCTCGCGCCTGGGTGTGGTAAG
GTTGCGGCGTTGGAAAATATGCCTATGCCTACGAATAAGAGCCANGCCAC
TTCCAGGTGTGTGTGCAGTTGTATCTGGATGATATCGTGGTGCACTCAAA
ATCCACAGCAGAGCATGTGGTGCATTTCGAGAAGTTGTTGGAACGGTTGC
GCATCCACAATCTGAAACTCGCTCCCAAGAAAGCGAATGTGGGTGCCGCC
GAAGTGGAATTTTTGGGCCCCAAGTGGCCTCGCGCCTGGGTGTGGTAAGG
TTGCGGCGTTGGAAAATATGCCTATGCCTACGAATAAGAGCCAGCTTCGT
TCCCTGTTGGGCAGTTTTTCCGTATCTCAGCAAGTTTATCCCTATCTAGG
CCACTCGAGTGCGGGGTCTCAACGAGGTATAAAAAAAAGGGCAAGGAATT
TCGGTTCACGACTCAACACGAAGAAACCACTAGAGCGATTCTCAAAACGT
TGATGAGCACGACAACATTGGCGTTCCCTGAATATGAGGCTGCCATCAAT
GGCTCCCGCCCGTTTCAGTCATCGTCCGATGCGTCTGTTCATGTTTTTGG
GGCCGTTCTGGAACAGCAACAGATTAGTGGCACAATGCGTCCTCTCGTAT
ACGTCAGTCGATCAACTCCCCCTAGCGAACGCAACTGGGACACGACTGGC
CTAGAAATGGGGGCGTTGGTTTGGGCTGTCAAAAAGCTCCGAGTATATTT
GGACGGTATTCCCTTCGTGGTGCATACGGACCACCAACCTTTGACTAGCT
ATCTTTGAGTGAGAAGAAGCCTCGAGTGCATCGAATGTGTGACGTCCTCA
GCAGCTATCAGTTTTCCTTGCGCTACAAAAAGGGGAACGATAATCAGGTA
GCTGACATGCTTTCACGGTTGCCGCAACCTGCGACCGAAAATGATGAATC
GGGGCCGAACCGCCTCATAGAAGAGGGTGATCTCGATGTGTACTTTGTGG
GTGCTGCAAATTGCCTGTCCCCTCCCTTGGACTTGCAATTGCAGACTTCC
TCCCACGAGGATTTGTCGTTTATGGAGCCCGTAGATCCATTGACCACCGA
TGAGGTTGCGCAGGACCAGTGGATCTGGCTGTCCGATCTCGTCAACGCGT
CGTCAGTACCGTCAGGTATCAGGTGTCGTGGGTCCTCGCTAGTAACCCGT
CTCCCGCCCCTAGTTCCACGCCCGTCCCCATTGTACTTTTAGTGGCCAGT
TTCAATCAGGTGTTCTGCTCCACGCGTGCTCGGTATTCCCGGCTACGCCG
ATCTTGCCGGTCTCCACCCGCTCCACTGGAGTCGTGCCTCGGTCACCTCG
TGTCCGAGCGGGCCGTCGTCCTTCCTGGAAGGTTCGAGAACGGGAGGAGG
CACCTGAGCCCGTCGCTGCCACCGCTGTGCCTGCTAGCGACGGTGCTTCG
GCCGCACGACCAGCGCGTCGTCGTGCCGCCGCCCGTGGTCCGACACCGCC
GTCCCGAACGGGCCCCGCGGAGGACACACCGGCTCCTAGCGCGGCCGGTC
GCCGTCACCGGCGCCAGAGACCGCCTCCCCCAGCCGACCCCGTAGTGGAA
CAACCGGCTCCTCGCGGGGCCGGTCGTCGCACCCGGCGTCCCGCCGCGCC
GACGCCCACACGACTGCCACGGCACCTGAGGAGCCCCGTTATCGTCCACC
GAGGTCGCGCCGAGACTCAGCTTCGACATTTGAGGGGCCCCGAGTTCGTC
CATCGAGATCGAGACGAGCCGCCGCCGCCCGCCGTACCCCGTCGACCGCC
GCCCAGCACCCGACCTTCACTTCCGACGCGCGCGTCGAGCCGACTTGTCG
ATTCGGGGCGCGGTTGTGCGACAGGACCGACCTCGAGTGGGCCGCCGAGC
AAGCGCGAGACCCCCTGGCGTCTTACGTCATCAAGTACGTGGGTGATTCT
GACTCTTTTAGCTTTCCTGATGTGGGCGATTGCATTGGGGATGAGGATAC
CATCACTCTTAAAATGATTCAGAAGTTGGCGGACAAGTGCACACTCGTGA
CTTTGCCTCGCTCCGGACCGGTAGGGGCCAAAGACGCCCACCACGTGCTC
CTGATAAAGAAACCGTCCGAAGCGCCTACATCTCGCGCCCAGCGACACAG
CGGCGGTAAAATCGAGAGACTTTTGGGGGATGAACCGATCCGATTGTACG
TTCCTTTTCTTTTGCCGGCCGTGGGAGCTAAATGCGGTGCACACAGAAGG
TTGTCATTTAGGAGAGGACGTGACGCTGGCCTCCCTCGAGCGTTACTATT
TTTGGATTGGCATGAGTGACAGCGTGCGATGGTTCATTAAACACTGCATC
GTGTGCCAAGCCTCGACAAGCTCGCCGAAAACCTATATGGCCGTTGATTT
CGCTGCTCTTACCCTCTCGGCCGGGGGAAATGGTGGCGTTTGATATTCTT
GGCCCTCTGCCGACAACTAAACGCGGAAACAAATACGTGTTGCTAGCCGT
TGACTTGTTAAGTAGGCATGCCGAACCCTACGCTCTCTGCCGACGAGAAA
ACGGCTCAGGGGTGTGCCTTAAAGCTAGCCGCCGATTATTGTACGCGTTG
GGGATGTCAGGTGTATTTGTTGTCGGATAGAGGTGGCGAGTTTACGGAGG
CTGTCGCGCGTGATGTGTACCGATTGCTTGGGGACAAGAAACGGTTTACC
AGCTCATTCCACCCTCAAACCAACGGGCGCGTCGAAAGATTGAACCATTC
GGTCTGCCAGATGTTGTCTCACGTGATCAGCGCCCAACAAACCGATTGGG
ATGACCATCTCTTGCCGCGTGTGTGCGCTCACAACAATCACGTGAGCAAG
GCTACCGGTCTTGCGCCCATGGAAGTACATATTGGCCGGTATCCTCGTTT
ACCGATGACGGTTCTTGGGTCACAGAAGGTGGTTTCTGGTATGCAATCGA
ACAAGCGGGATGATCTAGAATACCTCCAGCTCATGAATACCGACAAGCGA
AGCCTACGAGCTAGTGGTTGGAAGAGACAGGCTCACGAAAGAAAAACACC
GAGCACGCAACGAAGATCTAGACAACCTAGATACGAAGCGGCCGATTTTC
CACGCGGGCACGTGGGTGTGGTGCTACGATCCTCAGGACACCCTCCGCAC
AGCGAATGGCGATAAAACAGCTTCTGCCAATAGGATTAAAGCGAAACTCG
CCAACCTGTGGACAGGACGGTATATAGTGCTTGCTGGCGGGCCCTGTCGC
TTTAACGACATGAAAGTTGGGTTCAAGTTGCTGTATCTGGATTTACCGCA
CGACACACAGGCCAAATCCAACCGTGTCTCAGTGTTGCGTTGTAAGCGTT
GCCATCGTGCGGACGAACCTGAGGAAATCCCCGACTTTTTACCTTGGAAA
ATTTGTTCGTACGTCCTGCATAAAAATGCGGACATGGCGCCTCCCTTTTA
CCTCACCGCGGATGACGTGTGGGAATAGAGCTTGACGTACAACGTGCACA
GCCGACCGCTATCACCGGTCACCGTATCAGTTGAGGTCCAGGGAGTTCCA
TCGCGGTACAATACGAAACGCGTTGGCGCGGACACCGCCAGCCCACTTGG
GAATCTGCAGCAAACATCCAGCAGTATGGTGGTTTTGTCGTATTGGGTGG
GCAGTACAGTGCGTCAGGTAGGAGTCGACAGTAAAGTGCACCGTGACTAT
AACAAGCTTGCCGCGCACCGCGCGCAAGCTCGCTCGTAATTTCCTTTATC
TGCCGCCAGGGTACGCGTTTCTGGCGACGTCGGAGCGTGGGCCGGCCTTG
CTGTCAGCGGAGATGAAAGGAGCGCATGTTTACGTGCGGACGAAGCAGGA
GGGCTGGCAGCTGGGAGTGGTACATCAGGTTTCGAGGGCGCGGGAGGAGG
ACCTGCCGTACAAGGTCAACTTCGTCGACCTCGAGCGGCGTTTCAACGTG
TCGCTGTCGCCGACAAAGTATTGTACGGCGGTGGATGGTCCGCCCGGATC
GTGGTGTTTTCTTGTGCACATGCGGTCCGGGAGCGTCCGGCGGAACGGGA
CCTGAG back to topCoding sequence (CDS) from alignment at Scaffold_451:1510142..1514547+ >EsuBft1068_4a-0001 ID=EsuBft1068_4a-0001|Name=EsuBft1068_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1596bp|location=Sequence derived from alignment at Scaffold_451:1510142..1514547+ (Ectocarpus subulatus male Bft15b) ATGCATGACCACCTGGGGGGTAGCTCCGTCTTCTCGGTGCTCGACTTGGT GAGCGGCTTCTACCAAGCCGCGATCCACGAGGGTTCCATCCCCTTAACGG CCATCGTGACGACTACGGGGTTGTACGAATTCGTTCGAGTCCCCATGGGG ACGAGTGGTGCGCCCAGCCACTTCCAGGTGTGTGTGCAGTTGTATCTGGA TGATATCGTGGTGCACTCAAAATCCACAGCAGAGCATGTGGTGCATTTCG AGAAGTTGTTGGAACGGTTGCGCATCCACAATCTGAAACTCGCTCCCAAG AAAGCGAATGTGGGTGCCGCCGAAGTGGAATTTTTGGGCCCCAAGTGGCC TCGCGCCTGGGTGTGGCCACTCGAGTGCGGGGTCTCAACGAGGTATAAAA AAAAGGGCAAGGAATTTCGGTTCACGACTCAACACGAAGAAACCACTAGA GCGATTCTCAAAACGTTGATGAGCACGACAACATTGGCGTTCCCTGAATA TGAGGCTGCCATCAATGGCTCCCGCCCGTTTCAGTCATCGTCCGATGCGT CTGTTCATGTTTTTGGGGCCGTTCTGGAACAGCAACAGATTAGTGGCACA ATGCGTCCTCTCGTATACGTCAGTCGATCAACTCCCCCTAGCGAACGCAA CTGGGACACGACTGGCCTAGAAATGGGGGCGTTGGTTTGGGCTGTCAAAA AGCTCCGAGACCAGTGGATCTGGCTGTCCGATCTCGTCAACGCGTCGTCA GTACCGTCAGGTGTTCTGCTCCACGCGTGCTCGGTATTCCCGGCTACGCC GATCTTGCCGGTCTCCACCCGCTCCACTGGAGTCGTGCCTCGGTCACCTC GTGTCCGAGCGGGCCGTCGTCCTTCCTGGAAGGTTCGAGAACGGGAGGAG GCACCTGAGCCCGTCGCTGCCACCGCTGTGCCTGCTAGCGACGGTGCTTC GGCCGCACGACCAGCGCGTCGTCGTGCCGCCGCCCGTGGTCCGACACCGC CGTCCCGAACGGGCCCCGCGGAGGACACACCGGCTCCTAGCGCGGCCGGT CGCCGTCACCGGCGCCAGAGACCGCCTCCCCCAGCCGACCCCGTAGTGGA ACAACCGGCTCCTCGCGGGGCCGGTCGTCGCACCCGGCGTCCCGCCGCGC CGACGCCCACACGACTGCCACGGCACCTGAGGAGCCCCGTTATCGTCCAC CGAGGTCGCGCCGAGACTCAGCTTCGACATTTGAGGGGCCCCGAGACCGA CCTCGAGTGGGCCGCCGAGCAAGCGCGAGACCCCCTGGCGTCTTACGTCA TCAAGTACGTGGGTGATTCTGACTCTTTTAGCTTTCCTGATGTGGGCGAT TGCATTGGGGATGAGGATACCATCACTCTTAAAATGATTCAGAAGTTGGC GGACAAGTGCACACTCGTGACTTTGCCTCGCTCCGGACCGGTAGGGGCCA AAGACGCCCACCACGTGCTCCTGATAAAGAAACCGTCCGAAGCGCCTACA TCTCGCGCCCAGCGACACAGCGGCGGGGTGTGCCTTAAAGCTAGCCGCCG ATTATTGTACGCGTTGGGGATGTCAGGTGTATTTGTTGTCGGATAG back to top
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