EsuBft1067_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1067_3a-0001
Unique Name	EsuBft1067_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_205	contig	Scaffold_205:325057..330329 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1067_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	185
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1067_3a	EsuBft1067_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_205 325057..330329 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1067_3a-0001	EsuBft1067_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_205 330089..330307 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1067_3a-0001-exon	agat-exon-43623	Ectocarpus subulatus male Bft15b	exon	Scaffold_205 325057..326372 -
EsuBft1067_3a-0001-exon	EsuBft1067_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_205 329796..330329 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1067_3a-0001-exon	agat-three_prime_utr-647	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_205 325057..326372 -
EsuBft1067_3a-0001-exon	agat-three_prime_utr-648	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_205 329796..330088 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1067_3a-0001-cds	EsuBft1067_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_205 330089..330307 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1067_3a-0001-exon	agat-five_prime_utr-404	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_205 330308..330329 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_205:325057..330329-
coding sequence from alignment at Scaffold_205:325057..330329-

spliced messenger RNA

>EsuBft1067_3a-0001 ID=EsuBft1067_3a-0001|Name=EsuBft1067_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1850bp|location=Sequence derived from alignment at Scaffold_205:325057..330329- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCCTCCTTCTCCTCTTTCATGCCAAACGCCACGAGGTCCTCTCCTA
GGCGATACACCCAGTCGCTCTCCTGCCCGCCCCGGTATCCGGTACCCCCC
GCCATCGCTCCCAGCAGCATGCGCTTGGGGAGGCGGTTGTCCTCCATGCG
CATAACGAAGCCCGCAAAACACAGCCTCCGTTTGCGCACGGTGGCCTCGA
TGGTTTCCTCGCAGCCGGCCTGGATGAGGGCCTGGGCGTAGGACAGGGGT
CGGTCTGAGCGCTTCCGCTTGCTCCAGCCGATACACCGTGTCAGGAACTG
GCGGTGGGTCCCATTCAGCTTGGTGTAGTGCTCCGCTGCCAGGCTCCACG
AGGCGCACCCGTATAGGAGGGTCTGCACCACTTCAGCCTGGAGTAGTCGG
ATCTTGAGCTGGCGGTTGGCCCGTTTCCTGTCGTACATCGAAGTGCTGTT
CCGGCGGTAGCACTTCCATGCTCGGCAGATGCGGCTCGTGATCTCCCGGT
CGACCTTCCCATCCGCGCAGATGGTACGTCCGAGTTAACTTGATCGACTT
CATATGTCGCGAGGGAAGAGATTGCTGTACCCTTCTCGCGATGAAAATAT
CTCGGGCAGGAACAGCAGGAGGGGTCCAACCCCCCCCCTCCCATGTGACC
CTGGTAGGGTCGTCCAGCTGGTAGAAGCGGTGGGTAGGGGCCAGAGGGGC
AGACGACAGAGTCCAATGATGGGAGAAAAAAAAAAAAATCGCGCCACCCG
GTCGGTCCCTTCTCGTTTGCCTTGTTCCCTCGCCGTCTCGTCCGTCTCCT
GCCCCCCTCCCGCCCCATTGGTTGTTGGCTTGTGGTTTCGTTTGAGCGCT
CGTTGTCGGCCGGCCCATTCTTCCTTCTCGTGCCAGGAGGTCGTGAACCT
CTCAGCGCCCTGCAGCACCGCCGCATGCCAGGGTACTCCCCCCTCCACCT
TCGCGGCTTCCGTCCACATTAACTTCGGTGCCGTGTCTTTCGGTACCGGG
ATTCCGAGACAACACGGATCGGTTTTCGTAGATCCGTGGTCGGCCCCGAA
TGCCTTCAGGTCGTCGAGTACCCACTTCTGCCAGTTCTGTTCCTGTCCCC
CGCCAGTTCGCCGAGCATTAATCGTTTCGGGAGTCGCCCGTCTGGCTGCC
TTGCCAATGCTCCCGCGAACAGTAGGCGTCGTTGTCGGATCGTGGCTTCA
ACGCTCTGGCATTCGGCCCTCTTCAGCGTCTGGGCGTAAGAGAGCTGTCG
GTAGGTGTCTTTCTTTCGCATGTCTCCGATAGCGCGAAGGAGCAGTCGGT
GGTGTATCGACCGCAGCGTCTGATAGTGGCCGCTGAGTGGTGACCATGTC
ATGCCGCCGTACAGCAGTGCCTCCATCGCCTCCGCCTGCAGCAGGCGGAT
CTTGACTCGGAATGGCGCTTTCGGTCTGTCGAAGAGCTCCCGGCTATATC
GCCTGAGGCACGCCCACGCTGCTCTGCTCCTGTAGTTGATCTCCCAGGTG
AGGTCGCCATGTTCGTTGACGAGGCCACCGAGGTACCGGAACTCGGTCGT
CTGGGCGTATTTCTGTCCCGCGGCTTCGATGGTCAGCGGTGGAGGCGGGG
GGGGCTGTGATGGTAGTCGGCTTGTCCTTCGCGCGCATCAGGAGCGTCTC
CGTCTTCTTCTCCGATACCGTTAGCCCGAACTCCCTGAACACCTCAACGA
TGATGGTCATCATTCTCGCCAGTCCTTCTGCAGACCTTGATACGACGCCG
GCATCATCGGCATACAGCATCCCCCATACTGCCCTCCGTACTCGGTCAAG
GGGTGTCTCCTCCCCCCCCCGCTTCCGTCCTCCCCTCCTCCAAGCACACC

protein sequence of EsuBft1067_3a-0001

>EsuBft1067_3 ID=EsuBft1067_3|Name=EsuBft1067_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MPNATRSSPRRYTQSLSCPPRYPVPPAIAPSSMRLGRRLSSMRITKPAKH
SLRLRTVASMVSSQPAWMRAWA

mRNA from alignment at Scaffold_205:325057..330329-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1067_3a-0001 ID=EsuBft1067_3a-0001|Name=EsuBft1067_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5273bp|location=Sequence derived from alignment at Scaffold_205:325057..330329- (Ectocarpus subulatus male Bft15b)
CCCCCCCTCCTTCTCCTCTTTCATGCCAAACGCCACGAGGTCCTCTCCTA
GGCGATACACCCAGTCGCTCTCCTGCCCGCCCCGGTATCCGGTACCCCCC
GCCATCGCTCCCAGCAGCATGCGCTTGGGGAGGCGGTTGTCCTCCATGCG
CATAACGAAGCCCGCAAAACACAGCCTCCGTTTGCGCACGGTGGCCTCGA
TGGTTTCCTCGCAGCCGGCCTGGATGAGGGCCTGGGCGTAGGACAGGGGT
CGGTCTGAGCGCTTCCGCTTGCTCCAGCCGATACACCGTGTCAGGAACTG
GCGGTGGGTCCCATTCAGCTTGGTGTAGTGCTCCGCTGCCAGGCTCCACG
AGGCGCACCCGTATAGGAGGGTCTGCACCACTTCAGCCTGGAGTAGTCGG
ATCTTGAGCTGGCGGTTGGCCCGTTTCCTGTCGTACATCGAAGTGCTGTT
CCGGCGGTAGCACTTCCATGCTCGGCAGATGCGGCTCGTGATCTCCCGGT
CGACCTTCCCATCCGCGCAGATGGTACGTCCGAGGTACACAAACCGATCT
GTCTGCTTGTACGTCTGGCCAGCGGCGCTGACCGCGAACGGGCGTTCCCC
CAGCCCTTTCGGTAGCATGCACATGATCTCCGTCTTTGGCTCCGATACCA
TCAGTCCGAACAGGCCGGCCACGCGCACGATGATGGACATCATCTTTTCG
AGGCTCTCCGGCGTGAGCGAGACGATGGCCGCGTCGTCAGCGTAGAGCAT
GTCCCACAGGGCCTCTGCGACCGTCACCATCATCGCCTTGTTCCCCGCCC
TATGTGTTTGTTGCTTGTTTTGTTGTTGTCTTCACATTAATAACCGTTCC
GATCTCTCTCTACCCAGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTT
TCTTCACATGAAACTCGTGTCAGTTGCTAATCCCAAAATCTAGCAAANTG
GTGTGTGTGTGTGTGTTGTGTTCTTTCTCCAAAACCTAGCATCCATTGGG
CTAGCTACTGTGGTTGGCTGATGTGCGCGCGTGTGTGTACGTTGCGTGTT
GAGCCTGCAACCGCAGCACAGCTGAGGTGTTCGTGCGTCTCCATTCAAGT
ACCGCACATACTGGAGTCATCGCACAGGGTGTGGAATCATCGCACGGTCC
GGAGTCATCGCACCCCTGTGCGATGAAAATTAAACTTGGAAAATGTTTAT
AAAACGATCGCACAGGGGTGCTCTAACCCGCAACCTTACGGTTGTTGTTG
TTGTTGTTGACTTCACATTAAAAACCATCCCGGTCTCTCTATCNATCATT
TTGATTTCTCTTTCTGAGTGGTTTGTACCCTATTTTTGTTTTTTTTTCCC
GCAACGTTGTATGTGCCGCGTGTTGAGACCACGGGCTCCCCATTTTTTGT
GGACTATAGAGCTGATGTGAGANCTTCGGGCTAACTCAACCTAATAAGGT
ACACTCCAATAAACTGGCCCCGAGGGGTCCGCAAGTCAGTAGAAATCAAC
CACAGATATTCTGGAGTTCTCCACTCCCTCTGCGCGCTATTCGAGTCAAC
AACTGAGACTAGGAGTCACTATCACGGGCCGGAGAGAATGGGTACACCCC
CTTGGTTCACTCTTGGTATTTCACAACGCAAGCAAAGACAAGGCCATGTG
GCACANCAGCTTTTGTCTGCTGTCAGAATGAGTTCGTGGACATACAATGA
AGAACACCCAACCAAAGCCATTATTGCAATTAACAATCACCCGAATCTAT
CCAGATCATCTGTGTTGGGCACAGCAGTGTAAAAATCGACACTGACTAGG
AATCGTTCCACATTGAAGGGGTCTTCCACGATGCAGGTACACAATTAAGG
CACCCGGGTTATCCGCGTCATCTCTGCCGCGTCTCTCTACAAAACCAGTG
ACGTCATCACACACACCCAACACGTATATTCAGGATTTTGCCGCAAGCAT
CTCGTCAATGGCCTCTCCTGCTGCCAACGGGTCCGCAGGGGCAGCTACCG
CGTCCGCAGAGGAAGGACGGACCCCACTAGCCCCTGAGATCGCAGCACCG
CCCGTCCTTGATACCTCCGACATGATTGCCAAGCGATTGTGGGTCGCGTG
CGCTGCTGTTGTAGGCACAATTCGACGGCGGACAATCACCCATGTTTTCC
GCCCGCGGCATTTTGTATTTCGCCGCGTTTTATTTCGCCGCTTTTTGGTG
TGTGTGTGTTTTTATTATTAGCATCGACCGCGCTAACCGGCTGACCAATG
AAAAGACGTCAGTCTTAGTGCGGTTGAAAACACAAAACACTTCTATCTAC
CATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGGAGGCTAAACTATCC
TTCCGATAAAAAACAGAAACAGCAGCAACAGACGAAAAATGCACGCGTCT
ACCAAGGCTATTACCTAGTACTCGTGGTGTGTGTGTGTNTCTCCACTCCC
TCTGCGCGCTATTCGAGTCAACAACTGAGACTAGGAGTCACTATCACGGG
CCGGAGAGAATGGGTACACCCCCTTGGTTCACTCTTGGTATTTCACAACG
CAAGCAAAGACAAGGCCATGTGGCACAGAAAAAGAGAGAAAAAAAAGAGT
AAAAGAGAAAATATAGAAAAAAAAATAGAAGGAAACAGTAATGAGAGGGA
AAATAATATGAAAAAGAGCGAGGACAAAAAGGGACCAGGCCGAAAATAGC
AAGAAACAAATTTCTGAAAAGGCACACGGTGGAGAGACCACTAACGAACA
AGCAAACACGCAACCATGGCCACCAACCAGCGATATATCACTGCTGTTGC
CTTTGCTTTTTTGTACGACTGGCTGTCTGCCCATCTGCCGCCTCTTTGCC
CTGTTTGCTCCGTTACTTCCATGCCCTGGTGCGCAGTGCCTGGTGCTGGT
ACGTTACGTTACCCTTTCATTTTTTCTTTCGGCGGGTGTGGGAAGCGTCC
TCCTTTATTTTATTTTTTTGTTATTTTTGTTTTGTTTTATTTTGGTCGGT
GTCCGAGGGCTCTGTTCTCGAACAGTAGGTGCGATACCTGTTCTTTTCTT
TCTTTCGATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTATCCTATTTTT
GTTTTTTGTTTTCTCGCGGCGTCGTATGTGCCGGGTTTTGAGACCACGGG
CTCCCCATTTTTTGTGGACTATAGAGCTAGTGTGAGAAACAACAACAACA
ACAACAACAACATATTACGCTATACTTCTTGATGTATGTCCTTTGTATTG
CCTTCGGCCTCTGTGCTGTGTTTCTTTTTTCATGACCTCCCTGCCTACTC
TGCTGTGTTGCGTACCTTGATCTCTCTTTTGCTGTTGCTTTTGTTTTTGT
ACGTCTGGTTGTCTGCCCATCTGCCGCCACTTTGTCCTGTTTGCTCCGTT
ATTCCCATCCCCTGGTGCGCAGCGCCTGGTGCTTGTACGTCACCCTTTGA
TTTTTCTTTTGGCGAGTGTGGGAAGCGTCCTCCTTTATTTTGTTTTTGAT
TTACTTTGATCGGTTTCCGAAGGCTCTTCTCTCGAACGGTCGATGCGATA
CCTGTTCGTTTCGTTCGATCTTTTTTTTTCTTTTTCCGAACGGCTTGTAC
CCTATTTTGTTTTTTTTCCCCGCGGCGTTGTATGTGCCGGGTTTTGAGAC
CACGGGCTCCCTATTTTTTTTTCTGGACTAGAGAGCTCATGTGAGAACAA
CAACAACAACAACAACAACATTTTAATGGTACGTCATCACTAGTGGGCGG
TTGGTGCAATGGTGCAGCGTTGGGGGAGGGAATAGGCTAAAAGGGATTCA
ATCCGGCACATACGCCGGTCGCCCCGGTGGTCTAGTGCGTAGGCTCGCAG
CCTGCTAAGGGCCAGGTCATGGGTTCGAGTCCCGATAGAGTGAGTTTTTC
TCGCTAATCAAATCCCGGTCTCCGTTGGAAGCGACGCGCCGCATAGCTCG
TTGTTAGTTAACTTGATCGACTTCATATGTCGCGAGGGAAGAGATTGCTG
TACCCTTCTCGCGATGAAAATATCTCGGGCAGGAACAGCAGGAGGGGTCC
AACCCCCCCCCTCCCATGTGACCCTGGTAGGGTCGTCCAGCTGGTAGAAG
CGGTGGGTAGGGGCCAGAGGGGCAGACGACAGAGTCCAATGATGGGAGAA
AAAAAAAAAAATCGCGCCACCCGGTCGGTCCCTTCTCGTTTGCCTTGTTC
CCTCGCCGTCTCGTCCGTCTCCTGCCCCCCTCCCGCCCCATTGGTTGTTG
GCTTGTGGTTTCGTTTGAGCGCTCGTTGTCGGCCGGCCCATTCTTCCTTC
TCGTGCCAGGAGGTCGTGAACCTCTCAGCGCCCTGCAGCACCGCCGCATG
CCAGGGTACTCCCCCCTCCACCTTCGCGGCTTCCGTCCACATTAACTTCG
GTGCCGTGTCTTTCGGTACCGGGATTCCGAGACAACACGGATCGGTTTTC
GTAGATCCGTGGTCGGCCCCGAATGCCTTCAGGTCGTCGAGTACCCACTT
CTGCCAGTTCTGTTCCTGTCCCCCGCCAGTTCGCCGAGCATTAATCGTTT
CGGGAGTCGCCCGTCTGGCTGCCTTGCCAATGCTCCCGCGAACAGTAGGC
GTCGTTGTCGGATCGTGGCTTCAACGCTCTGGCATTCGGCCCTCTTCAGC
GTCTGGGCGTAAGAGAGCTGTCGGTAGGTGTCTTTCTTTCGCATGTCTCC
GATAGCGCGAAGGAGCAGTCGGTGGTGTATCGACCGCAGCGTCTGATAGT
GGCCGCTGAGTGGTGACCATGTCATGCCGCCGTACAGCAGTGCCTCCATC
GCCTCCGCCTGCAGCAGGCGGATCTTGACTCGGAATGGCGCTTTCGGTCT
GTCGAAGAGCTCCCGGCTATATCGCCTGAGGCACGCCCACGCTGCTCTGC
TCCTGTAGTTGATCTCCCAGGTGAGGTCGCCATGTTCGTTGACGAGGCCA
CCGAGGTACCGGAACTCGGTCGTCTGGGCGTATTTCTGTCCCGCGGCTTC
GATGGTCAGCGGTGGAGGCGGGGGGGGCTGTGATGGTAGTCGGCTTGTCC
TTCGCGCGCATCAGGAGCGTCTCCGTCTTCTTCTCCGATACCGTTAGCCC
GAACTCCCTGAACACCTCAACGATGATGGTCATCATTCTCGCCAGTCCTT
CTGCAGACCTTGATACGACGCCGGCATCATCGGCATACAGCATCCCCCAT
ACTGCCCTCCGTACTCGGTCAAGGGGTGTCTCCTCCCCCCCCCGCTTCCG
TCCTCCCCTCCTCCAAGCACACC

Coding sequence (CDS) from alignment at Scaffold_205:325057..330329-

>EsuBft1067_3a-0001 ID=EsuBft1067_3a-0001|Name=EsuBft1067_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_205:325057..330329- (Ectocarpus subulatus male Bft15b)
ATGCCAAACGCCACGAGGTCCTCTCCTAGGCGATACACCCAGTCGCTCTC
CTGCCCGCCCCGGTATCCGGTACCCCCCGCCATCGCTCCCAGCAGCATGC
GCTTGGGGAGGCGGTTGTCCTCCATGCGCATAACGAAGCCCGCAAAACAC
AGCCTCCGTTTGCGCACGGTGGCCTCGATGGTTTCCTCGCAGCCGGCCTG
GATGAGGGCCTGGGCGTAG