EsuBft1067_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1067_2a-0001
Unique NameEsuBft1067_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_205contigScaffold_205:331723..332419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1067_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length32
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1067_2aEsuBft1067_2aEctocarpus subulatus male Bft15bgeneScaffold_205 331723..332419 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1067_2a-0001-exonagat-exon-43622Ectocarpus subulatus male Bft15bexonScaffold_205 331723..331731 +
EsuBft1067_2a-0001-exonEsuBft1067_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_205 331949..332006 +
EsuBft1067_2a-0001-exonagat-exon-43621Ectocarpus subulatus male Bft15bexonScaffold_205 332164..332419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1067_2a-0001-cdsEsuBft1067_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_205 331723..331731 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1067_2a-0001-exonagat-three_prime_utr-646Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_205 332271..332419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1067_2a-0001EsuBft1067_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_205 331723..332270 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1067_2a-0001 ID=EsuBft1067_2a-0001|Name=EsuBft1067_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=323bp|location=Sequence derived from alignment at Scaffold_205:331723..332419+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAGGGGCAGAGACACGATGGAAAGGGCGCAGAAACGTTTGTGTG
GGAAATCAACGACATTGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGC
CATCTGAGGATCTAAAGAACACGCACACATCTGACATGAAAAAGGTATGC
AAGAGCCCGAAGAGGTACACCTAACAATCCCTGCAGCACCGTATGCGTGC
CCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCA
CCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGC
ATAATGCTGTCTGAAGTGCTGGA
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protein sequence of EsuBft1067_2a-0001

>EsuBft1067_2 ID=EsuBft1067_2|Name=EsuBft1067_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MQKGQRHDGKGAETFVWEINDIDSQPVVTKVLEPSEDLKNTHTSDMKKVC
KSPKRYT
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mRNA from alignment at Scaffold_205:331723..332419+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1067_2a-0001 ID=EsuBft1067_2a-0001|Name=EsuBft1067_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=697bp|location=Sequence derived from alignment at Scaffold_205:331723..332419+ (Ectocarpus subulatus male Bft15b)
ATGCAAAAGGTAATAGGCAATGAACCGCCCCCAGTCACAAATCGAATGAA
TCTCACTGAAAGAACCGCAGTATCGTGATGACTTGGAAGTCGGCGATGAC
AATGGTTCAGCAACATTATACCATTGCTGGGGTAACTTGGGGGCTTGGTG
TGTTGAGGCTACTGTGTGAGCAACACCACAGTGGTTTCTCAACAGAAGGG
GGGGGAGATAGTCATGTTGGGCACAGGGGCAGAGACACGATGGAAAGGGC
GCAGAAACGTTTGTGTGGGAAATCAACGACATTGGTAAATCTCTCTTTCC
TCGGGGGTTTTGGGAGATACATGCAGGAGATACGAAACTTCTGAACCGAA
ATTCGATCGCAAACAACCGGAAGTTTGTTGTTGTTGTTTGTCTTCACATT
AAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGCAACAGACTCTCAGC
CCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATCTAAAGAACACGCAC
ACATCTGACATGAAAAAGGTATGCAAGAGCCCGAAGAGGTACACCTAACA
ATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTCCGTCC
CACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTCCCACTCTATACCA
AAACGGAAGATTGCCGACTACAGCATAATGCTGTCTGAAGTGCTGGA
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Coding sequence (CDS) from alignment at Scaffold_205:331723..332419+

>EsuBft1067_2a-0001 ID=EsuBft1067_2a-0001|Name=EsuBft1067_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_205:331723..332419+ (Ectocarpus subulatus male Bft15b)
ATGCAAAAGGGGCAGAGACACGATGGAAAGGGCGCAGAAACGTTTGTGTG
GGAAATCAACGACATTGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGC
CATCTGAGGATCTAAAGAACACGCACACATCTGACATGAAAAAGGTATGC
AAGAGCCCGAAGAGGTACACCTAA
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