EsuBft1066_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1066_3a-0001
Unique NameEsuBft1066_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_85contigScaffold_85:152342..153011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1066_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length45
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_3aEsuBft1066_3aEctocarpus subulatus male Bft15bgeneScaffold_85 152342..153011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_3a-0001-exonEsuBft1066_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_85 152342..152361 +
EsuBft1066_3a-0001-exonagat-exon-107534Ectocarpus subulatus male Bft15bexonScaffold_85 152574..153011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_3a-0001-cdsEsuBft1066_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_85 152342..152361 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_3a-0001-exonagat-three_prime_utr-643Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_85 152800..153011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1066_3a-0001EsuBft1066_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_85 152342..152799 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1066_3a-0001 ID=EsuBft1066_3a-0001|Name=EsuBft1066_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=458bp|location=Sequence derived from alignment at Scaffold_85:152342..153011+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTACTTCAACCTGTGGGGACACGGCGGAAAAGCTATAGCTTACAC
ACCGATCGCTCCGCTGCTACTGCTGCATACCTGCGCGTACCTCGACTACG
CAAACGAAGCACGATCCCTGGGCGTGCTTCCCTGTCAGCCTCTGGCCAGG
CGACGCGATGACCCGGATGTCAGCTGGCCTTGTGCTTCTGGCTCAGGCGG
CGACCTTTGGGGCGAATCACGCGTTCTCAGTGAGCAGCGGCAGTAGCAGT
AGCGCACGGGTGCATCATGAGCTGTCCAGACATCGTCCGCCCAAGCCTTT
TCTGGCTGCCGAAGCCTGCTTGCAAGGATGGTGCTCCCACAAGTGCAAGG
CGCGAGTGGTGGCTGGCGGAGCGGCGGGCGTGTCGATGTCGTGGTGCTGC
AGGACGAGGCGAAGCCGCAGTTCCTCTCGTCTGACTGCTTCTGCTGCTGC
TTCTGCTG
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protein sequence of EsuBft1066_3a-0001

>EsuBft1066_3 ID=EsuBft1066_3|Name=EsuBft1066_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MLYFNLWGHGGKAIAYTPIAPLLLLHTCAYLDYANEARSLGVLPCQPLAR
RRDDPDVSWPCASGSGGDLWGESRVLSEQRQ
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mRNA from alignment at Scaffold_85:152342..153011+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1066_3a-0001 ID=EsuBft1066_3a-0001|Name=EsuBft1066_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=670bp|location=Sequence derived from alignment at Scaffold_85:152342..153011+ (Ectocarpus subulatus male Bft15b)
ATGTTGTACTTCAACCTGTGGTGATGGATGATTTTTGCGGCGACTGTTGT
GTTTCCCTCGCCTCAAGCAGTGATGGGGAGGCAGGGCGCTTGCTGCTACG
CATTCCGCATGAACAGCGAGAGTTCTAACGAAGATCTACGATCGTCATGA
TGTTCATTTTTTTGTCTTGGACAGTGCCAACCGACGGCAGCACACCATCT
GTTACACATTTCATGACCCTTACATGAACTAGGGGACACGGCGGAAAAGC
TATAGCTTACACACCGATCGCTCCGCTGCTACTGCTGCATACCTGCGCGT
ACCTCGACTACGCAAACGAAGCACGATCCCTGGGCGTGCTTCCCTGTCAG
CCTCTGGCCAGGCGACGCGATGACCCGGATGTCAGCTGGCCTTGTGCTTC
TGGCTCAGGCGGCGACCTTTGGGGCGAATCACGCGTTCTCAGTGAGCAGC
GGCAGTAGCAGTAGCGCACGGGTGCATCATGAGCTGTCCAGACATCGTCC
GCCCAAGCCTTTTCTGGCTGCCGAAGCCTGCTTGCAAGGATGGTGCTCCC
ACAAGTGCAAGGCGCGAGTGGTGGCTGGCGGAGCGGCGGGCGTGTCGATG
TCGTGGTGCTGCAGGACGAGGCGAAGCCGCAGTTCCTCTCGTCTGACTGC
TTCTGCTGCTGCTTCTGCTG
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Coding sequence (CDS) from alignment at Scaffold_85:152342..153011+

>EsuBft1066_3a-0001 ID=EsuBft1066_3a-0001|Name=EsuBft1066_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_85:152342..153011+ (Ectocarpus subulatus male Bft15b)
ATGTTGTACTTCAACCTGTGGGGACACGGCGGAAAAGCTATAGCTTACAC
ACCGATCGCTCCGCTGCTACTGCTGCATACCTGCGCGTACCTCGACTACG
CAAACGAAGCACGATCCCTGGGCGTGCTTCCCTGTCAGCCTCTGGCCAGG
CGACGCGATGACCCGGATGTCAGCTGGCCTTGTGCTTCTGGCTCAGGCGG
CGACCTTTGGGGCGAATCACGCGTTCTCAGTGAGCAGCGGCAGTAG
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