EsuBft1065_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1065_9a-0001
Unique Name	EsuBft1065_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:883480..885015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1065_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	153
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_9a	EsuBft1065_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 883480..885015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_9a-0001-exon	EsuBft1065_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 883480..885015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_9a-0001-cds	EsuBft1065_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 883480..884829 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_9a-0001-exon	agat-three_prime_utr-642	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 884830..885015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_9a-0001	EsuBft1065_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 883480..884829 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:883480..885015+
coding sequence from alignment at Scaffold_246:883480..885015+

spliced messenger RNA

>EsuBft1065_9a-0001 ID=EsuBft1065_9a-0001|Name=EsuBft1065_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1536bp|location=Sequence derived from alignment at Scaffold_246:883480..885015+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGCCTCCCCCCCCCGCCGGAATCCACGGGCCCGCCAGCTCCCAC
GGCCTCCAAAGCTCGAATCCGGCGACGGCGGAGGCGGTGGGTCGCAGCGT
CCTTGGTCGACACCTCGCGGGTTGCCAGCGACGAGATGAGGGAGTCCTTG
TCCATCATTGCTAACAGACCAAGATGGTGGTGGAGAGCGGCGCTGCCACC
GGACGACGGTTGTTGTCGCTCGTCCACGAACCTCACCCCATCGCCGCGCG
TGCGGCCGTTTACCGTTGTCTCCTCTCGTCCCAACTCCTTGACGGCTCGT
TTCGAAAGCGGCGGGTGCGGAGGAGCGGGAGCGACGGCGCTGGCGGGCTG
CGGCGGCGGCGGCGGCGGCGGCAGGCCCTGCAGCGAACGAAGCGGTGTGG
CTGGGGCTGATGATGGCGCGACGGAGATCGGCGACGGGGTTGAAGATCCT
GTGAAGATTGGCGAGGAAGAAGGCGGCGGCGGTGCGGTGGTCGCCGGTGC
TGGCGAGGTGTACGTGTACGTCCTTGCCGACCTGGGCGGCGGCGGTGTGG
CAGCGGCCGGCGGAACGGCGGCGGCCGGCGAGGGGGCCGCAGTGACCGAA
ACCCCCCCTCCCGATGCCCGGCACCGGCGTCGGCGTTGCTGCTCTCGGGT
TGACCCACGCGACGTTGTTGGTGAGGGCGAGGCGCCCGGTGTCAGCGCGA
AGAACGACGGCGGTGGACGTCGAGTGGTTGTTGGCGCCGTGCAGGTAGAA
GCACCGCGCAGATTGGACGTCCGCCTTGGTGGCCCGCTTCACGCGCATCA
TCCCTTCCTGGAAAAAAGGGACGACGGTGAGGGGCGGCTTCCGGCCGAAG
AACGCCTCGCACGGCGACATCCAGCCCCGGTTGGCCTTCGTCGCGGAGCG
ATTAAAGCAGGCGGATGCCCACAGCGCCGAAGCGAGCTACAGGCGATGTC
CGTTGACGCCGACGTTGGGGATGGAGGAGAGGTCGACGTGGCCGATGGCG
AGGGTGTGGCGGCGCGCGGCGTGGCCCCCCTTCACGGCGCGCCAAATGGC
GCTCTCAACCACCGCGTTTTGCTTGGGGGTGTCGGGGGCGGTGTACTCGC
GTCGAATGCCAGCAGCGTCGCAGAACGAGGTGAACGCGGAGCCGGTGAAC
TCGCCGCCGTTGTCCATGCGGAAACACCCTGGAGTGCCCATGCCGTTCAT
GTCGGCGAGGAAGGGCAGAACGTACTTCAGGGTGTCGCTCTTGGCCCGCA
TTCCGTACCCCCGTTGCCACCGCGACGCGCTGTCCACGAACATGATCAGG
TGCCGGGAGCGTCCAGCGCGTCAGAGAACGGGCCCGTGAGGTCGATGTGA
GCTTTGCCGAACGGTACCGCCGCGCGGGTGCCACGCCGCGACACCGGGGC
CCGCCTGCCCTTCGCTTCCACGCAGCCCACACACGGCTGCATCTCCCTCA
CCAGTCGTACACCCTGCTGGTTGGCTGTCTCACGCATCAGAAATTCGTTG
ACATGGCCGGTGGAGGCATGAAACAAATTAATGTCG

protein sequence of EsuBft1065_9a-0001

>EsuBft1065_9 ID=EsuBft1065_9|Name=EsuBft1065_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=449bp
MCGLPPPPESTGPPAPTASKARIRRRRRRWVAASLVDTSRVASDEMRESL
SIIANRPRWWWRAALPPDDGCCRSSTNLTPSPRVRPFTVVSSRPNSLTAR
FESGGCGGAGATALAGCGGGGGGGRPCSERSGVAGADDGATEIGDGVEDP
VKIGEEEGGGGAVVAGAGEVYVYVLADLGGGGVAAAGGTAAAGEGAAVTE
TPPPDARHRRRRCCSRVDPRDVVGEGEAPGVSAKNDGGGRRVVVGAVQVE
APRRLDVRLGGPLHAHHPFLEKRDDGEGRLPAEERLARRHPAPVGLRRGA
IKAGGCPQRRSELQAMSVDADVGDGGEVDVADGEGVAARGVAPLHGAPNG
ALNHRVLLGGVGGGVLASNASSVAERGERGAGELAAVVHAETPWSAHAVH
VGEEGQNVLQGVALGPHSVPPLPPRRAVHEHDQVPGASSASENGPVRSM

mRNA from alignment at Scaffold_246:883480..885015+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1065_9a-0001 ID=EsuBft1065_9a-0001|Name=EsuBft1065_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1536bp|location=Sequence derived from alignment at Scaffold_246:883480..885015+ (Ectocarpus subulatus male Bft15b)
ATGTGCGGCCTCCCCCCCCCGCCGGAATCCACGGGCCCGCCAGCTCCCAC
GGCCTCCAAAGCTCGAATCCGGCGACGGCGGAGGCGGTGGGTCGCAGCGT
CCTTGGTCGACACCTCGCGGGTTGCCAGCGACGAGATGAGGGAGTCCTTG
TCCATCATTGCTAACAGACCAAGATGGTGGTGGAGAGCGGCGCTGCCACC
GGACGACGGTTGTTGTCGCTCGTCCACGAACCTCACCCCATCGCCGCGCG
TGCGGCCGTTTACCGTTGTCTCCTCTCGTCCCAACTCCTTGACGGCTCGT
TTCGAAAGCGGCGGGTGCGGAGGAGCGGGAGCGACGGCGCTGGCGGGCTG
CGGCGGCGGCGGCGGCGGCGGCAGGCCCTGCAGCGAACGAAGCGGTGTGG
CTGGGGCTGATGATGGCGCGACGGAGATCGGCGACGGGGTTGAAGATCCT
GTGAAGATTGGCGAGGAAGAAGGCGGCGGCGGTGCGGTGGTCGCCGGTGC
TGGCGAGGTGTACGTGTACGTCCTTGCCGACCTGGGCGGCGGCGGTGTGG
CAGCGGCCGGCGGAACGGCGGCGGCCGGCGAGGGGGCCGCAGTGACCGAA
ACCCCCCCTCCCGATGCCCGGCACCGGCGTCGGCGTTGCTGCTCTCGGGT
TGACCCACGCGACGTTGTTGGTGAGGGCGAGGCGCCCGGTGTCAGCGCGA
AGAACGACGGCGGTGGACGTCGAGTGGTTGTTGGCGCCGTGCAGGTAGAA
GCACCGCGCAGATTGGACGTCCGCCTTGGTGGCCCGCTTCACGCGCATCA
TCCCTTCCTGGAAAAAAGGGACGACGGTGAGGGGCGGCTTCCGGCCGAAG
AACGCCTCGCACGGCGACATCCAGCCCCGGTTGGCCTTCGTCGCGGAGCG
ATTAAAGCAGGCGGATGCCCACAGCGCCGAAGCGAGCTACAGGCGATGTC
CGTTGACGCCGACGTTGGGGATGGAGGAGAGGTCGACGTGGCCGATGGCG
AGGGTGTGGCGGCGCGCGGCGTGGCCCCCCTTCACGGCGCGCCAAATGGC
GCTCTCAACCACCGCGTTTTGCTTGGGGGTGTCGGGGGCGGTGTACTCGC
GTCGAATGCCAGCAGCGTCGCAGAACGAGGTGAACGCGGAGCCGGTGAAC
TCGCCGCCGTTGTCCATGCGGAAACACCCTGGAGTGCCCATGCCGTTCAT
GTCGGCGAGGAAGGGCAGAACGTACTTCAGGGTGTCGCTCTTGGCCCGCA
TTCCGTACCCCCGTTGCCACCGCGACGCGCTGTCCACGAACATGATCAGG
TGCCGGGAGCGTCCAGCGCGTCAGAGAACGGGCCCGTGAGGTCGATGTGA
GCTTTGCCGAACGGTACCGCCGCGCGGGTGCCACGCCGCGACACCGGGGC
CCGCCTGCCCTTCGCTTCCACGCAGCCCACACACGGCTGCATCTCCCTCA
CCAGTCGTACACCCTGCTGGTTGGCTGTCTCACGCATCAGAAATTCGTTG
ACATGGCCGGTGGAGGCATGAAACAAATTAATGTCG

Coding sequence (CDS) from alignment at Scaffold_246:883480..885015+

>EsuBft1065_9a-0001 ID=EsuBft1065_9a-0001|Name=EsuBft1065_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1350bp|location=Sequence derived from alignment at Scaffold_246:883480..885015+ (Ectocarpus subulatus male Bft15b)
ATGTGCGGCCTCCCCCCCCCGCCGGAATCCACGGGCCCGCCAGCTCCCAC
GGCCTCCAAAGCTCGAATCCGGCGACGGCGGAGGCGGTGGGTCGCAGCGT
CCTTGGTCGACACCTCGCGGGTTGCCAGCGACGAGATGAGGGAGTCCTTG
TCCATCATTGCTAACAGACCAAGATGGTGGTGGAGAGCGGCGCTGCCACC
GGACGACGGTTGTTGTCGCTCGTCCACGAACCTCACCCCATCGCCGCGCG
TGCGGCCGTTTACCGTTGTCTCCTCTCGTCCCAACTCCTTGACGGCTCGT
TTCGAAAGCGGCGGGTGCGGAGGAGCGGGAGCGACGGCGCTGGCGGGCTG
CGGCGGCGGCGGCGGCGGCGGCAGGCCCTGCAGCGAACGAAGCGGTGTGG
CTGGGGCTGATGATGGCGCGACGGAGATCGGCGACGGGGTTGAAGATCCT
GTGAAGATTGGCGAGGAAGAAGGCGGCGGCGGTGCGGTGGTCGCCGGTGC
TGGCGAGGTGTACGTGTACGTCCTTGCCGACCTGGGCGGCGGCGGTGTGG
CAGCGGCCGGCGGAACGGCGGCGGCCGGCGAGGGGGCCGCAGTGACCGAA
ACCCCCCCTCCCGATGCCCGGCACCGGCGTCGGCGTTGCTGCTCTCGGGT
TGACCCACGCGACGTTGTTGGTGAGGGCGAGGCGCCCGGTGTCAGCGCGA
AGAACGACGGCGGTGGACGTCGAGTGGTTGTTGGCGCCGTGCAGGTAGAA
GCACCGCGCAGATTGGACGTCCGCCTTGGTGGCCCGCTTCACGCGCATCA
TCCCTTCCTGGAAAAAAGGGACGACGGTGAGGGGCGGCTTCCGGCCGAAG
AACGCCTCGCACGGCGACATCCAGCCCCGGTTGGCCTTCGTCGCGGAGCG
ATTAAAGCAGGCGGATGCCCACAGCGCCGAAGCGAGCTACAGGCGATGTC
CGTTGACGCCGACGTTGGGGATGGAGGAGAGGTCGACGTGGCCGATGGCG
AGGGTGTGGCGGCGCGCGGCGTGGCCCCCCTTCACGGCGCGCCAAATGGC
GCTCTCAACCACCGCGTTTTGCTTGGGGGTGTCGGGGGCGGTGTACTCGC
GTCGAATGCCAGCAGCGTCGCAGAACGAGGTGAACGCGGAGCCGGTGAAC
TCGCCGCCGTTGTCCATGCGGAAACACCCTGGAGTGCCCATGCCGTTCAT
GTCGGCGAGGAAGGGCAGAACGTACTTCAGGGTGTCGCTCTTGGCCCGCA
TTCCGTACCCCCGTTGCCACCGCGACGCGCTGTCCACGAACATGATCAGG
TGCCGGGAGCGTCCAGCGCGTCAGAGAACGGGCCCGTGAGGTCGATGTGA