EsuBft1065_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1065_7a-0001
Unique Name	EsuBft1065_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:889179..891170 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1065_7
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	147
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_7a	EsuBft1065_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 889179..891170 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_7a-0001-exon	EsuBft1065_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 889179..890098 -
EsuBft1065_7a-0001-exon	agat-exon-19212	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 890614..891170 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_7a-0001-exon	agat-three_prime_utr-641	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 889179..889653 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_7a-0001-cds	EsuBft1065_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 889654..890098 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_7a-0001	EsuBft1065_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 889654..891170 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:889179..891170-
coding sequence from alignment at Scaffold_246:889179..891170-

spliced messenger RNA

>EsuBft1065_7a-0001 ID=EsuBft1065_7a-0001|Name=EsuBft1065_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1477bp|location=Sequence derived from alignment at Scaffold_246:889179..891170- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCATACGCGC
AGCTAAGAAGTTATTTCGCGTGTATCTCGACTTGGGGGGAAAGATGNAGA
AAGCAGCCAACCCCACTGACCTCAACGAGTATCACCTCGCGCACGGCCAT
GCCCACGAGACATTGCTCAGGATCACGGCGGAGCAGCAGGGAGTGCAGCT
GACGGATGGACCGCTGCTACCCTGTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTTCTTGAAACACAAGTCT
GACGCAGCGGTTGGGTTTGAGAAGTTCCTGGCAGACTACCGAACGAAAGG
AGTTCCGTGTGGGGTTTATATCGCATGTACCGACGGTGGCGGCGAGTTCC
AGGGGCATGACGCCGGCGGTGCCGGCGGCCCGGGCGGCGAAGAGTCCGGC
GACCTAGGTGGGGGCGGCGGTGGCGATGGTGATCCAGGCGACTCCGAGAA
CTTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCCGCGGGC
TAGAAGGGAAGAAACTCATCTGGGGCGCCTCGAACGCTGGCCCGCTGCGC
CATGTGCTTGAGAGTGGCTGCACGCGGAAGCAGACCCGGGAGATGCAAGG
TGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCAC
TGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGGACTAC
ATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCG
TATGGAGGAGATGTACAGGCGCGAGGTGCAGGAGGTGTTGGGCCCGGAAT
AGCAGGCGTTCGAGGCCGAGGTCGACGCCAGCGTGTCTTCGCAACCAGTT
CCAGACCCACAGCTAAGTATTACCTCGCCAATCGGGCAGAAGCCGAGTGA
TGTGGAAGCAGTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACA
AGTTTTTCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACAAGACT
GGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGTCATAGA
TTCAAAGTGGGTGTTCTCTTGGAAGACGAATGAGAAGGGCCTGATAGTCG
ACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATC
GACTTCCACCACTCATCCTCAGCGTGTCCGTCTGCAGCGTCTATCAAGAC
GGTGATGGCCGTAGCCACTGAAAAGCGAAAGAAACTCGCTCACTGGGATG
TGAAGCAAGTGTACATCCACGCTAAGC

protein sequence of EsuBft1065_7a-0001

>EsuBft1065_7 ID=EsuBft1065_7|Name=EsuBft1065_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=333bp
MSKGQVKPVQKSTSIRAAKKLFRVYLDLGGKMXKAANPTDLNEYHLAHGH
AHETLLRITAEQQGVQLTDGPLLPCLXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFFLKHKS
DAAVGFEKFLADYRTKGVPCGVYIACTDGGGEFQGHDAGGAGGPGGEESG
DLGGGGGGDGDPGDSENFEELKYDPADDRYPRGLEGKKLIWGASNAGPLR
HVLESGCTRKQTREMQGAGEMPGPGETPDPEEALLATILETGGTGIVEDY
ICNSLVKEQWDEEQTRRMEEMYRREVQEVLGPE

mRNA from alignment at Scaffold_246:889179..891170-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1065_7a-0001 ID=EsuBft1065_7a-0001|Name=EsuBft1065_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1992bp|location=Sequence derived from alignment at Scaffold_246:889179..891170- (Ectocarpus subulatus male Bft15b)
ATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCATACGCGC
AGCTAAGAAGTTATTTCGCGTGTATCTCGACTTGGGGGGAAAGATGNAGA
AAGCAGCCAACCCCACTGACCTCAACGAGTATCACCTCGCGCACGGCCAT
GCCCACGAGACATTGCTCAGGATCACGGCGGAGCAGCAGGGAGTGCAGCT
GACGGATGGACCGCTGCTACCCTGTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTTCTTGAAACACAAGTCT
GACGCAGCGGTTGGGTTTGAGAAGTTCCTGGCAGACTACCGAACGAAAGG
AGTTCCGTGTGGGGTTTATATCGCATGTACCGACGGTGGCGGCGAGTTCC
AGGGGCAGTTTGCGGAAGTTTGCCGCAGACACCGCATCAAACAAGAGTTC
ACCCCCCCTCAAACCCCAAAATACAACGATGTAGCGGAGCGCGCTAGGGT
TAATCACTGATGCCGCGCTTGCGTTACGCATCCAAGCGACGCAACTGTTC
CCCGACGCACCGAACCACCCCGGGTTGTGGGCCGAGGCCATTTCGTGTGC
ATGCCATCAGCTGAACTGCACCGCCACTAAATCAAACGAGGGAGACACAT
GCGCCTACGAGATGTTCCGCAACTCCCCACCGCCTGTCGGGTCTACATAC
CCGTTTCTCAAACCAGCCGTGTTCAAGTCGAGAAGAAAAGCAAAGTCGCA
ACCCAAGGGCGAAAAAGGATGGTACCTTGGTCCTGCCCACAATCACCCCC
GTGACTGCGTTCGCATGCTAACCGAAGCTGGAACCGTAATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCA
GCAGCAGCAGCAGCAGCAGCAGTGACGCCGGCGGTGCCGGCGGCCCGGGC
GGCGAAGAGTCCGGCGACCTAGGTGGGGGCGGCGGTGGCGATGGTGATCC
AGGCGACTCCGAGAACTTCGAGGAGTTGAAGTATGATCCAGCCGACGACC
GCTACCCCCGCGGGCTAGAAGGGAAGAAACTCATCTGGGGCGCCTCGAAC
GCTGGCCCGCTGCGCCATGTGCTTGAGAGTGGCTGCACGCGGAAGCAGAC
CCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGG
ACCCGGAAGAGGCACTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGG
ATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGA
GGAGCAGACACGCCGTATGGAGGAGATGTACAGGCGCGAGGTGCAGGAGG
TGTTGGGCCCGGAATAGCAGGCGTTCGAGGCCGAGGTCGACGCCAGCGTG
TCTTCGCAACCAGTTCCAGACCCACAGCTAAGTATTACCTCGCCAATCGG
GCAGAAGCCGAGTGATGTGGAAGCAGTACCGATGACGTACAAGGATGTGA
TGTGTTCCAAGTACAAGTTTTTCTGGGAGGCGGCCATGAAGAAAGAGATA
GATGGCCACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGG
GCGGAAGGTCATAGATTCAAAGTGGGTGTTCTCTTGGAAGACGAATGAGA
AGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCT
CAAATCCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGTCCGTCTGC
AGCGTCTATCAAGACGGTGATGGCCGTAGCCACTGAAAAGCGAAAGAAAC
TCGCTCACTGGGATGTGAAGCAAGTGTACATCCACGCTAAGC

Coding sequence (CDS) from alignment at Scaffold_246:889179..891170-

>EsuBft1065_7a-0001 ID=EsuBft1065_7a-0001|Name=EsuBft1065_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1002bp|location=Sequence derived from alignment at Scaffold_246:889179..891170- (Ectocarpus subulatus male Bft15b)
ATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCATACGCGC
AGCTAAGAAGTTATTTCGCGTGTATCTCGACTTGGGGGGAAAGATGNAGA
AAGCAGCCAACCCCACTGACCTCAACGAGTATCACCTCGCGCACGGCCAT
GCCCACGAGACATTGCTCAGGATCACGGCGGAGCAGCAGGGAGTGCAGCT
GACGGATGGACCGCTGCTACCCTGTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTTCTTGAAACACAAGTCT
GACGCAGCGGTTGGGTTTGAGAAGTTCCTGGCAGACTACCGAACGAAAGG
AGTTCCGTGTGGGGTTTATATCGCATGTACCGACGGTGGCGGCGAGTTCC
AGGGGCATGACGCCGGCGGTGCCGGCGGCCCGGGCGGCGAAGAGTCCGGC
GACCTAGGTGGGGGCGGCGGTGGCGATGGTGATCCAGGCGACTCCGAGAA
CTTCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCCGCGGGC
TAGAAGGGAAGAAACTCATCTGGGGCGCCTCGAACGCTGGCCCGCTGCGC
CATGTGCTTGAGAGTGGCTGCACGCGGAAGCAGACCCGGGAGATGCAAGG
TGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCAC
TGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGGACTAC
ATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCG
TATGGAGGAGATGTACAGGCGCGAGGTGCAGGAGGTGTTGGGCCCGGAAT
AG