EsuBft1065_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1065_5a-0001
Unique NameEsuBft1065_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:894912..897110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGQ9
ProteomeIdEsuBft1065_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length109
Hectar predicted targeting categoryother localisation
Evalue2.67e-104
EggNOG OGs29KZ4@1|root,2RU8C@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_5aEsuBft1065_5aEctocarpus subulatus male Bft15bgeneScaffold_246 894912..897110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_5a-0001EsuBft1065_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 895321..897073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_5a-0001-exonagat-exon-19211Ectocarpus subulatus male Bft15bexonScaffold_246 894912..895602 -
EsuBft1065_5a-0001-exonEsuBft1065_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 896331..896423 -
EsuBft1065_5a-0001-exonagat-exon-19210Ectocarpus subulatus male Bft15bexonScaffold_246 896804..897110 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_5a-0001-exonagat-three_prime_utr-639Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 894912..895320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_5a-0001-cdsEsuBft1065_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 895321..895602 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_5a-0001-exonagat-five_prime_utr-401Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 897074..897110 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1065_5a-0001 ID=EsuBft1065_5a-0001|Name=EsuBft1065_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1091bp|location=Sequence derived from alignment at Scaffold_246:894912..897110- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTATGCTAAACTCTGTGAAGCTAAGGATTGACAGCGATGCTCTCGGGAC
AAGGGAAAACAGCTGAGCAGTGCAACACCGCAGCAAAATACCCGATGAGC
GTCGAGAAAGTTCGGACAGAGAAACTTCCCGCCCCTCTCGAAGGGTGCCG
CGAACCAAAGTGCTACCGCTGTCGTCGCCGTCCCGCTCTTCTGCCTCCCA
TCGGCCGAACGCAGGACTGGGGACACGTGGCCAAATGCCATCTCCACTCC
TCCATGGTCTTGTCCAAGCTCAACCGCCATGACGAAGCTCTTAGGTGTCT
CGGACAGGTCTTGGCGATGGTCCAGGAGGGCAAGCTCGACGTCGGGGGGA
ACTCTCCGCAGAAGCTGTGCCTTGTGGCCATCTGCTATCACAACATGGCT
GTCGAGCAGCTGATCCTGCGCCATGCCGGAGAGGCCTGCATGAGCAGCCA
GAACGCCCGTCGGCTAGCGCGCCTGTGCCTGTCCTACTCCAACCGCTGGC
TCCACTCCTTCGAGGGCACCCACAAGCTCGCGCTCGCTGAGCTCTCCAGG
AGCCTGTCCACCACTGGCGGAGACGGGGCGGGTGGAAACGTGGGGCAGCG
GAGGGGCAGCGGGGGGTGCGGAGAGGGGGAGAGAGAGCAGAAGGATATAT
TGCAACGATTGACGGAAGAACTCTTTTCGTAGCGCAGGTTTCGTCGAGGT
GGGGCTTCGCATCGTCACAGAAAGCTTGGACAGGATTCGTACAAACGCAG
CGTATGTTAAGAGGACCGGCGATGCACTGGGCTGCATAACCGGCGCATGC
CGAAAGAGCGAAGCTACAGGTCTAGACTAGGGCTGAAGGGCTGGAAAAAA
TCTGGCCCCATGCGTCTTATGGTTCGACACTCTGCAGGGCTCGGACCTTG
ATACGGTTCAAGTAGGAGCATCCACTCTGGGGTATGGCGAGACATCCGCA
CGGACGAACCTTTCTGTTGCCGGTGCTGTCTAGTCTGTGGGCGGGTCGAT
GGTGAACAGCTTCTGCTAAGGCGACACAAATCAAAGGGGGAAAATACCAC
CTAAAGCTTATGAGGGAAGACGGGGTAGGTGTCCACTGTTT
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protein sequence of EsuBft1065_5a-0001

>EsuBft1065_5 ID=EsuBft1065_5|Name=EsuBft1065_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=214bp
MLSGQGKTAEQCNTAAKYPMSVEKVRTEKLPAPLEGCREPKCYRCRRRPA
LLPPIGRTQDWGHVAKCHLHSSMVLSKLNRHDEALRCLGQVLAMVQEGKL
DVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSY
SNRWLHSFEGTHKLALAELSRSLSTTGGDGAGGNVGQRRGSGGCGEGERE
QKDILQRLTEELFS
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mRNA from alignment at Scaffold_246:894912..897110-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1065_5a-0001 ID=EsuBft1065_5a-0001|Name=EsuBft1065_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2199bp|location=Sequence derived from alignment at Scaffold_246:894912..897110- (Ectocarpus subulatus male Bft15b)
TCTATGCTAAACTCTGTGAAGCTAAGGATTGACAGCGATGCTCTCGGGAC
AAGGGAAAACAGCTGAGCAGTGCAACACCGCAGCAAAATACCCGATGAGC
GTCGAGAAAGTTCGGACAGAGAAACTTCCCGCCCCTCTCGAAGGGTGCCG
CGAACCAAAGTGCTACCGCTGTCGTCGCCGTCCCGCTCTTCTGCCTCCCA
TCGGCCGAACGCAGGACTGGGGACACGTGGCCAAATGCCATCTCCACTCC
TCCATGGTCTTGTCCAAGCTCAACCGCCATGACGAAGCTCTTAGGTGTCT
CGGACAGGTACTCCTGACGAAAAACCTCAGATGAGGAATCGCGTTCCGCC
CGGTTCCGACGCGTTTTTCTCGACGCCTTTCTAGGCAGGACCAAAACAAA
TATGCTCTCGCAAGCAATTGGTTCAGCATTTCTTTGCGAAACACTCGCGG
TTGCTAAAACGGATATCCACGCCAGTAAAAAAACTCTCTCGAAAGTAGCG
GCCTTAAACGTGCTCAGTACCACACGGAGTGAGAAGCCCAGCCCAGGATA
TCGCTGGTCGGTAACCGTGCCTCGTGGTCACCGCTAAAGCTTTCCATTTC
ATCTATTTACACTCCTATTGTGCCCTTGTCCCCTGTCCCCTTCCCCCGCC
CTCCGCCCCTGCGCTTCCTGCGGCGACGGCTCGCCAGGTCTTGGCGATGG
TCCAGGAGGGCAAGCTCGACGTCGGGGGGAACTCTCCGCAGAAGCTGTGC
CTTGTGGCCATCTGCTATCACAACATGGCTGTGAGTGAGCATGACTTTAA
ATTGTTTGGTACGTGACTTGGACGCTACGACAAGAACGTACCAACGGGTT
CGGGGAGTCACAGACGTCCACAATGAACCTAACTTCCCTGTATCACGGCT
TGTAGGGTCGGTTCCTTGGGATAGCTGTGTGACGCCAATGCTTCACGGGA
CAAGACCGATATCGATAAATATTTCCAGCTGCAGGAGGCATGTGGTTCCT
CCTTTGTCACGTTCAGAATCGGAACCATGCGATCGGGCAGCTGTGTATCA
GAGAAGATTCAATGGCTTTCTCCCTGGCAAGGTCTGATGGCTTGTGTAGG
TGAGGGTAAACATTCGCACGTCACGTGGGCGACTAATACCAAGAGTGTGT
AACGCCAATGCTTCACGGGACAAGACCGATATCGATAAATATGTCCAGCT
GCAGGAGGCATGTGGTCCCCCCTCTGCCACGTTCAGAATCGGAACCATGC
GATCGTGCAGCTGTGTATCAGAAAAGTTGAATGGCTCTCTCCCTAGCAAG
GACTGATCGCTTGTGAAGGTGAGGGAAAACAATCGCACGTCACGCGGGCG
ACTAACACCAAGAGTGAGCGGCAGAGAGCCTCCCCAAAGTCATCCTCTCT
TCTGCACCACGAAGTGGTGCTATAGATAGCACGATTGCATTCACTCGGTA
GTTCGTCCGGTCTTACCCGTGCAAAACCAAACCCGAAACGCTGCATGCAT
GCGCACAGGTCGAGCAGCTGATCCTGCGCCATGCCGGAGAGGCCTGCATG
AGCAGCCAGAACGCCCGTCGGCTAGCGCGCCTGTGCCTGTCCTACTCCAA
CCGCTGGCTCCACTCCTTCGAGGGCACCCACAAGCTCGCGCTCGCTGAGC
TCTCCAGGAGCCTGTCCACCACTGGCGGAGACGGGGCGGGTGGAAACGTG
GGGCAGCGGAGGGGCAGCGGGGGGTGCGGAGAGGGGGAGAGAGAGCAGAA
GGATATATTGCAACGATTGACGGAAGAACTCTTTTCGTAGCGCAGGTTTC
GTCGAGGTGGGGCTTCGCATCGTCACAGAAAGCTTGGACAGGATTCGTAC
AAACGCAGCGTATGTTAAGAGGACCGGCGATGCACTGGGCTGCATAACCG
GCGCATGCCGAAAGAGCGAAGCTACAGGTCTAGACTAGGGCTGAAGGGCT
GGAAAAAATCTGGCCCCATGCGTCTTATGGTTCGACACTCTGCAGGGCTC
GGACCTTGATACGGTTCAAGTAGGAGCATCCACTCTGGGGTATGGCGAGA
CATCCGCACGGACGAACCTTTCTGTTGCCGGTGCTGTCTAGTCTGTGGGC
GGGTCGATGGTGAACAGCTTCTGCTAAGGCGACACAAATCAAAGGGGGAA
AATACCACCTAAAGCTTATGAGGGAAGACGGGGTAGGTGTCCACTGTTT
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Coding sequence (CDS) from alignment at Scaffold_246:894912..897110-

>EsuBft1065_5a-0001 ID=EsuBft1065_5a-0001|Name=EsuBft1065_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=645bp|location=Sequence derived from alignment at Scaffold_246:894912..897110- (Ectocarpus subulatus male Bft15b)
ATGCTCTCGGGACAAGGGAAAACAGCTGAGCAGTGCAACACCGCAGCAAA
ATACCCGATGAGCGTCGAGAAAGTTCGGACAGAGAAACTTCCCGCCCCTC
TCGAAGGGTGCCGCGAACCAAAGTGCTACCGCTGTCGTCGCCGTCCCGCT
CTTCTGCCTCCCATCGGCCGAACGCAGGACTGGGGACACGTGGCCAAATG
CCATCTCCACTCCTCCATGGTCTTGTCCAAGCTCAACCGCCATGACGAAG
CTCTTAGGTGTCTCGGACAGGTCTTGGCGATGGTCCAGGAGGGCAAGCTC
GACGTCGGGGGGAACTCTCCGCAGAAGCTGTGCCTTGTGGCCATCTGCTA
TCACAACATGGCTGTCGAGCAGCTGATCCTGCGCCATGCCGGAGAGGCCT
GCATGAGCAGCCAGAACGCCCGTCGGCTAGCGCGCCTGTGCCTGTCCTAC
TCCAACCGCTGGCTCCACTCCTTCGAGGGCACCCACAAGCTCGCGCTCGC
TGAGCTCTCCAGGAGCCTGTCCACCACTGGCGGAGACGGGGCGGGTGGAA
ACGTGGGGCAGCGGAGGGGCAGCGGGGGGTGCGGAGAGGGGGAGAGAGAG
CAGAAGGATATATTGCAACGATTGACGGAAGAACTCTTTTCGTAG
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