EsuBft1065_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1065_3a-0001
Unique Name	EsuBft1065_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:902859..909294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	1267005.KB911257_gene988
ProteomeId	EsuBft1065_3
Protein domains	SSF158997
Protein domains	G3DSA
Owner	apollo_admin@sb-roscoff.fr
Note	upf0434 protein gox0764 os:gluconobacter oxydans (strain 621h) gn:gox0764 pe:3 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	28211\|Alphaproteobacteria
Length	1136
Hectar predicted targeting category	other localisation
Evalue	1.05e-08
EggNOG OGs	COG2835@1\|root,COG2835@2\|Bacteria,1N6Y2@1224\|Proteobacteria,2UF4N@28211\|Alphaproteobacteria,3N9D1@45401\|Hyphomicrobiaceae
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-07_005400.1
Date last modified	2016-06-15
Date creation	2016-06-15
Preferred name	MA20_24965
KEGG ko	ko:K09791
Description	Belongs to the UPF0434 family
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_3a	EsuBft1065_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 902859..909294 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_3a-0001-exon	agat-exon-19202	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 902859..903243 +
EsuBft1065_3a-0001-exon	EsuBft1065_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 908544..909294 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_3a-0001-exon	agat-five_prime_utr-400	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 902859..903144 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_3a-0001-cds	EsuBft1065_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 903145..903243 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_3a-0001-exon	agat-three_prime_utr-638	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 908691..909294 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_3a-0001	EsuBft1065_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 903145..908690 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:902859..909294+
coding sequence from alignment at Scaffold_246:902859..909294+

spliced messenger RNA

>EsuBft1065_3a-0001 ID=EsuBft1065_3a-0001|Name=EsuBft1065_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1136bp|location=Sequence derived from alignment at Scaffold_246:902859..909294+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCACGTCACACGCCATACAGCTCTCTCTCAGCTCTCAGCTCTCAGCTCT
CACAGAGCAGCACTTCCAGAGAAACTCATCTTCCGGGTCTTGAGCCTTGG
TCTCTGAAGAGCAAACACAACATCGGTTTGACCGAAACACTGGCACGTTG
CTGGTTGAAGGGGCGCTATCTTCAACGGCGTCCGTGTGTACGCCAAGGCC
AAGCGTCAGGCGGAGATACCATGTGGACTGGGCTTGCGAAGACCTTAGTA
GCTCGTTGCCGCTGTTGCATACAGCCGTTGAGAAGTATGGAGAGAGCCGT
GGGCGTCAGAAGAATAAGCACTGTGGGAGAGTTTTTGGAACCCGATGGAG
AGATGCTGAAGGCGCTGGTGTGCCCGTTTTCCAAGCTACCGCTTACTTAT
GATCGCGAGGCGAGAGAGCTGCTGTCTCCGGTAGGGGTGGCCTTCCCCAT
CACAGCAAACGGAGTCGCCGACATGACACCTGCCAGTGCGAGGCTTGTGG
AGGCACCTCCAGATGGCGGAGAGCAAGTGTGAACAGAACTGACGACGCAT
GCACGTGGCTACCGGCTCAAGCCACACCTCGTGTTGGCTGGGAGCAAGGA
ACCGAACCTGCACGGAGGGTACCTGTAGCGTGAGGCTCGTAGGATGGTCG
GGAAGTGGCGGCGTGTAAAAGCGGCTGCGAAAATTACCAGCAACACTCCG
GCTTCACCTAACCAACATCCGCCGCTGTGGTCGTCGCTCATCGAGGATTG
TATCCAACTGCGGCACGTTCGCCTTCGATTCTGTGAGAACATGGGCATGG
CAGGCAGGAACACCGTGAGACTGCGAGCGTTGGCGAGTGGCGTACGATTC
TTTGTGGCAGTATAATACTGTAGTAGTCAAGACATTAAGGGCGTCCCGTA
AACGTTGCAGAAACAAGCGCAAAAGTCCCTTGTAGGCTGGAACAATTGCC
TCTCTGTTCGCTCGGTCCTGCACCTCAGATCCCGATAATTGGTGCCCAAA
TCTGTCGAAAGGAGAACCGAGCACATGAACGAGCGGCCCAACATTACATG
TGAGTCATGGATTCCCGGAGACGTGGCTTTCCAGAGAATTAGAAAGAGGA
TTGGCCCATCCTCAAGCTGGGTGATTGAATCACCTG

protein sequence of EsuBft1065_3a-0001

>EsuBft1065_3 ID=EsuBft1065_3|Name=EsuBft1065_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MERAVGVRRISTVGEFLEPDGEMLKALVCPFSKLPLTYDREARELLSPVG
VAFPITANGVADMTPASARLVEAPPDGGEQV

mRNA from alignment at Scaffold_246:902859..909294+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1065_3a-0001 ID=EsuBft1065_3a-0001|Name=EsuBft1065_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6436bp|location=Sequence derived from alignment at Scaffold_246:902859..909294+ (Ectocarpus subulatus male Bft15b)
CGCACGTCACACGCCATACAGCTCTCTCTCAGCTCTCAGCTCTCAGCTCT
CACAGAGCAGCACTTCCAGAGAAACTCATCTTCCGGGTCTTGAGCCTTGG
TCTCTGAAGAGCAAACACAACATCGGTTTGACCGAAACACTGGCACGTTG
CTGGTTGAAGGGGCGCTATCTTCAACGGCGTCCGTGTGTACGCCAAGGCC
AAGCGTCAGGCGGAGATACCATGTGGACTGGGCTTGCGAAGACCTTAGTA
GCTCGTTGCCGCTGTTGCATACAGCCGTTGAGAAGTATGGAGAGAGCCGT
GGGCGTCAGAAGAATAAGCACTGTGGGAGAGTTTTTGGAACCCGATGGAG
AGATGCTGAAGGCGCTGGTGTGCCCGTTTTCCAAGGTGAGGTGGCCCCCT
GTTCATTTTTTTTTGGTCCACGTTGACAGCGGACGGAGATCGGGTTTTCG
TCCACAGCGTTAGCCCAGCCAATAGTATGTCTTCCCGCTTCTCATCATCA
GCGTAGTCTGCCCTCCTGTAGGGCCTGCTGCAGTATCTGGAAGCAGATGC
CCATTCCGTGGTCGGATTGTTCGGGAAGTGCGCGGAATCAACGCAGCAAG
TTATATCGTAGCTCCCGGCCGGTTAGCCTCGACTGTCCCATAGTCAGACA
AGCAAGTTTTCATGTGTATCAACCCTTACTCCACAGTATGTCACTACAGC
CGATTCAGCCCCGTTCTTTCCTCCGATCACTTTGCGTAACGGAAGATCGC
CGTTGTGCCTAGCGTAAGAGCAAAAAACATACATACAGACCAGCAGGGAG
GCAAAGAGGAAACCCACCCCAAAAGCACGCTCATCAGCCGTGCGCACACA
ACACACCGTACAATTCTATTCACCATGCCTATCTCTTTGATGTGGGGCAG
ATATCCTTTCCAGATCCAATCTGCTGCCTACCGGTCCTGCTGGAAGATTC
AAACGCAAAATACCACCGGAGGGTTCATGCAGCACCCTCAACCTGTGATT
GACCCGGTGCCGCATCCGCGGGGGAGAAAGCGCAAAGAAAACGCAAACCG
GAGCCGATGCCAACGTACTGTCTCGTTGCTTGATGTTGTCATGATTGTGG
TGCGCATGGTCCTCCGTATTAGGAGTGAAGAGGACGTTCGTCTGCTGTGT
GCAACGTTTTGCTCAAGGGCAAGGGTTTTCACGACTGCACCTCCGATCAC
ACCGCCGATCACAGTTCGGGGTGCAAATGGCCCAACAAACATGCAGGATT
GTTTTTCAAAATGTGTCCCGGATCTTCCAGATGGAAAAATGATCGAGCCA
ACCAAATCTCGAGAACCGGTACTTGCGCATGGCGAAAATGACATCAGCGA
GAGAGAGGAGCACACACCTCACAAGCCTATAAGTGATGCATGTAGATACG
GTGGCGAACGGACCCCACAGACTCACGTGACGAGCGCGACGCCAGCAAAG
CAGTCAGTGTGTTTGGCCCTTGGAGGTTGAATTGAGACTTGTGTTGTTGT
TGTTGTTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCAATCGTTG
TCTGATGTGGGAAAACAGTAATCCGTTGCATCCGGACAGAAAACGTTGTC
TGTCATGGCAAATGCTGCTGGCGGGAATAAGGAGACACTGCTTGACGTTG
CTTGCCGCCACCGTGCCACCGTGCCCGTACAAAAGGGGCCAGGATTACTG
GTCCCTGACCCTGTGGTTGGATGTCTGGCGTCTTAGGCCAAGCAAGCGGG
ATCGACACAAATAGCAATGGTGCCGTGAGCCTTTTTTTTTTTTTGCTTTT
TTGGCCCTTCAGGTATTTTTTTCATCGATATCTGCTGCACGCCACCTTTG
CTCCACCACCCTCTGCTTTCTGACCACACTAGACAATGAAAAGACCACAA
GCTCGAACGAGCTTGTTCTTCGTGCGTGCGCGGGGGTGCTAGCTATCTAC
GTCTCTCTTCGCTGTTTCCCAGCAACAGCACCTCTGATGATGTGACTGAA
AAAATGGAATAGCCAGCTTGAGCCAGCAATTGAAGAAAATGGGGCTTTTC
AGCAACCAGGTGCTCGCTTTCGTTTTTTGCGAATCTTTACGTACGCTGAG
CTGTCATCGCGTGGGGTAGCTGCGGCAAGAGAACATCTATCGCCCGCATG
CCGAATGTTGTTGTGTGTCGCCCTTCTCTACGAAAAATTCCGGGTTCTTG
TTCTTCTGCTCGCTCTTGCCCATCAGGAGGAACTTCAGCCAGGTTTCGGG
CGAAAGTGACCATTTTGACGCACGTATGCTCCATAACAGCGTGGGCGAGT
GCCTTCCTGTATTCTGTATTCTGTGTTGCCTGCTCTGACTCGCAAGGCAT
TGTTAGGCTTTCGCGTGATCCCCCAAAATCGTGTATGCGCGTGGTCCGAT
TATTTGTTTTTTGTGTGTGTGTTTTGTTGATCCGCACAACCAGGTGACGA
CGCCAAAAATATATTTGAACTTGATATAAGATGATGAACGTGTATCGCGA
AATACTCGCACCTACAAACGAATTGGCTCTTCCTACTCGACAGACACCTG
TCAAAAGGCTATATGGAGGGATTTGTGGGTCAGTTTTTGGAACCGACATC
AAAAAGTCATCAAACTGTCTAAAAACAAGTGATTTTCGGTACTTTTCACC
GGCGCCTACGTACGCGTGTGGCGTCACCGAAAATCGCCACCATCAAAACC
CCAGCTCCCGTCTCTGTGAAGGCAACACAAGAAACCGTACCACAGTCCAC
CACTCCGACGCCACACAGCCCGTCTTGTAAGATAGGGTACTGCTGAAGAC
ATAAAACAAAGCTTCAAAGCGGAAACGGAAAGAAAAGTTTTGTAGGCTAC
AGGAGACGTTGGTCTCGAAAAATGGCAAGGACCTGGCACAGAGGGCGACT
CAGAGCCGGTACGACGGCATCGTGCGACGCCAGGACGTTGCCGCGCTAAG
CCGCAGCCGCGACCTCGCGAAGATGGCTGAGGGTAAAGCGCGTGAAAGTA
AAAACAAGGCGATGGCAGCGAAACGGAATGCGGAAAAAGAAGCGGAGACG
GTACGAACCAAAGCCGAGGGGGAGCGGCGGCTGCGTCACGCGGCAACCTT
AGCGACGGAAGCCTTGCTCCCGTTCCAGCGCCAAAAGTAGAAGTGGCTAC
CACAACTCGCGACGCAATGCCACTTGAACGTCAGCAAGGTTGAGGAAGGG
GAGGTTCGGATGCGATTTCTTTTTGGGTGCTGCGTTTTTTTTTTCGTTTC
AGTCACCCGCTCTTTTTTTGCGGTGCGGAGTTTTTCTGCATGTGTGCGAG
CTTTTGTGCAACGCGCACATCCGCGCACGCGACGGCTAGAGTAGCTTTCG
CTACCGTTCTAGCGCCAAAAGCTGTGGATACCGCACTCGCGACGCAATGT
CACTTAAACCTCGGATAAGTTAGGGAAGGGTGGGGTTGGAAGCGATTCCT
TTTCGATATCAACTTGAAAAAACACACACGCACGCACGCGCACACACCGC
GGTTGAATTTTTGGGATGGAGAGTCTTTCGCGCATCATCTATCAACTTTT
GTCCTACGCGCACAGCCTCTACCGCGACCGCTAGAGCAGCTTTTGCCAAC
GTTCCAGCGCCAAAAGTAGCTGTGGACACCCCACTCGCGACGCCGTGTGA
CCTGAACCTCGCCAAAGTTGGGGAAGGGTGGGGTTGGATACAAGTCCTTT
CTGATGTCAACTTGAAAAAAAACGATTTCTTCCAAGATTCCTTGGAAACA
ACAAAAATCAGGGCTCCGCGTCATCGCCGCTCTCATCCTCCGACGTACAA
CCCAGATTCTCTGACGCCTCAGACTCAGACTCTTCAGACGACGACAGCAC
CTCGTCCATCACGCTCTTAGCAACCCACTTGCTGCCATGCTTTGATTTCT
CACTGTTGTCTTTCAAAAACTTTCTCCAGCCATGCTTTCGTTTTCGTAGT
TGCCTCTCGTTCGGAACTGCGTGAGAGGCACTCTTTTTCAACGCCCTCGC
AACGGAGGAGGAGGAGGAGGTGCAGCAGCCGTGGGTTGGGCCTGACCCTC
ACCGGCGTCGTCCGCCATTTCCGTGGCGACGGTCCGCGGGGGGGTGGTCC
TCGTCCAGTTGGGCGGAGCACCGCACCATACACTTTAAATGCGGCTGCTG
TGGTGTGTGCTCTCTACTCGAAACCACACCCATGCCCCCAAAAAAACAAA
TAAAAAAGCACGCTCGAACACAGATGGTTGTGGCCTGTTCGCCTGAAAAT
TGACTCGATTGTCAAAATTGGTGGGTTTTCATTGGTCGAAAAATATCCGG
GAAGAAATTGAAGTCTGTTCAAATGTAGGTCCGTGTGACAGGAAATCGGC
CCAACAAGAGGGTCAGGCGCAAGCCTAATTGTGTAGTACGCTCGGACTCT
CATGATTCGACGTCGCTCTGCCATCAGCAGAAATAACTCAAGAAAAAGTG
TGAAAATCACAGTTTGCTCTTTGGCTGCTCCCTCTTTATCCAAATGGAAA
ACGGAGCTTACTACAAACTGGTGCTGTACGCGGGTATTTCTAGAATAGGA
AGGGCCATCATGTCCCTGGGCGTAAGGACTCGTCCAATAATGAATAAGAA
GGCGGTCTAGAATCTAGTAGTCGCTCGGCGTCGTCAGACGGACTCCTTTT
TTATTTTTCTCGAGCTGAAATTTTCCAACAGACCGGGCACATTTTTTCGC
GCATACAAGCCCGATTTACCATCCCTACTTGGTCGTTATTTGCTTGCTAC
AGTGTAAAATGTATCCCGATCTTTTATGCATGTTTGTGCGATAGTGGATG
ATGTCTCGATTTTCTGAGTGGGCCGTTACTTTTTTCATACACTTGGCATT
TCTGTCAGACGGGTTCCTGTCAGCGTCTTCGCATCTAGCGCTGCTAGCAC
ACGCGCTTTTTACCGAATGCTCTTTTCAGCGATATGTCGGAGAAGATCTA
CTCACAGGTAGTGCTTGCACTGGTACATCCTCAGTGCGGATGGTTGCTGT
CGGAAACAGGCATTCACACCTCCTCAGCAACCACTGTTGCTGTAAATTTA
TTTTCTCTACGCATCACTACTAAAGCTGTACAGGTCCTGTTCCTCACCCT
CACAAATACCCGCGTCCCCATCCCTGTTAGCTCCACACATGGACTCGCTG
CTGCACCATCCTTGCCGCCGTAATTTGTGGGCGTACACGCATGCACGGAA
GATCTTTGGCCACAGAGAGCCCGTTGTGTGGAAAAAAAAAATCAAAAGTT
CAAATTTTCCCGGTCACGCAAGGTTTTGTCGGTTGTCCCCCAAGAGGGGA
AAGAGGGAGATGCGGAGCGAGAGTGACCCACAGCTGACGAAAGGCTACAG
AACACAGGTACCAAGTTACCCCGCCTACACCGATGCCGTCACTGCTGGAA
AGATCACCAACAAGTTATATGGTGCGCATACGTCGCTCAGACCGTGCCCC
CTACGGTATCGCTGAAGATGTGCAGACATGCGTTGGATCTACCGTGTGGA
TAAGCGTTCAACCAATCAGGGTGACGGCTAGATTCAATGGGTTGACGTTT
TGGAGTATGCTGGCTGTGGCTCCCTTCTCATTAGAAAGAGTGAAACAACA
CCACCACGAATATGGACAACAGCAACACTACCGGCAGTGCCGACTTGGAC
GTGTGTCGAATGCCCTTGCCCTCCTTTCCTACCAGCTACCGCTTACTTAT
GATCGCGAGGCGAGAGAGCTGCTGTCTCCGGTAGGGGTGGCCTTCCCCAT
CACAGCAAACGGAGTCGCCGACATGACACCTGCCAGTGCGAGGCTTGTGG
AGGCACCTCCAGATGGCGGAGAGCAAGTGTGAACAGAACTGACGACGCAT
GCACGTGGCTACCGGCTCAAGCCACACCTCGTGTTGGCTGGGAGCAAGGA
ACCGAACCTGCACGGAGGGTACCTGTAGCGTGAGGCTCGTAGGATGGTCG
GGAAGTGGCGGCGTGTAAAAGCGGCTGCGAAAATTACCAGCAACACTCCG
GCTTCACCTAACCAACATCCGCCGCTGTGGTCGTCGCTCATCGAGGATTG
TATCCAACTGCGGCACGTTCGCCTTCGATTCTGTGAGAACATGGGCATGG
CAGGCAGGAACACCGTGAGACTGCGAGCGTTGGCGAGTGGCGTACGATTC
TTTGTGGCAGTATAATACTGTAGTAGTCAAGACATTAAGGGCGTCCCGTA
AACGTTGCAGAAACAAGCGCAAAAGTCCCTTGTAGGCTGGAACAATTGCC
TCTCTGTTCGCTCGGTCCTGCACCTCAGATCCCGATAATTGGTGCCCAAA
TCTGTCGAAAGGAGAACCGAGCACATGAACGAGCGGCCCAACATTACATG
TGAGTCATGGATTCCCGGAGACGTGGCTTTCCAGAGAATTAGAAAGAGGA
TTGGCCCATCCTCAAGCTGGGTGATTGAATCACCTG

Coding sequence (CDS) from alignment at Scaffold_246:902859..909294+

>EsuBft1065_3a-0001 ID=EsuBft1065_3a-0001|Name=EsuBft1065_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_246:902859..909294+ (Ectocarpus subulatus male Bft15b)
ATGGAGAGAGCCGTGGGCGTCAGAAGAATAAGCACTGTGGGAGAGTTTTT
GGAACCCGATGGAGAGATGCTGAAGGCGCTGGTGTGCCCGTTTTCCAAGC
TACCGCTTACTTATGATCGCGAGGCGAGAGAGCTGCTGTCTCCGGTAGGG
GTGGCCTTCCCCATCACAGCAAACGGAGTCGCCGACATGACACCTGCCAG
TGCGAGGCTTGTGGAGGCACCTCCAGATGGCGGAGAGCAAGTGTGA