EsuBft1065_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1065_2a-0001
Unique Name	EsuBft1065_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:917864..921475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_010878-tr
ProteomeId	EsuBft1065_2
Protein domains	Coil
Protein domains	PTHR23227
Protein domains	IPR027124
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	329
Hectar predicted targeting category	other localisation
Evalue	1.57e-14
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39VM0@33154\|Opisthokonta,3BKMM@33208\|Metazoa,3D1CS@33213\|Bilateria
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Endonuclease/Exonuclease/phosphatase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_2a	EsuBft1065_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 917864..921475 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_2a-0001-exon	agat-exon-19201	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 917864..918550 +
EsuBft1065_2a-0001-exon	EsuBft1065_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 918868..921475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_2a-0001-cds	EsuBft1065_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 917864..918550 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_2a-0001-exon	agat-three_prime_utr-637	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 919324..921475 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_2a-0001	EsuBft1065_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 917864..919323 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:917864..921475+
coding sequence from alignment at Scaffold_246:917864..921475+

spliced messenger RNA

>EsuBft1065_2a-0001 ID=EsuBft1065_2a-0001|Name=EsuBft1065_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3295bp|location=Sequence derived from alignment at Scaffold_246:917864..921475+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCATGCAGATTTGTTCCGCGACCAGCTGTGATGTGATAGGACT
TCAGGAGACCAGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGACGCTGATGAGGGTGCGTC
TACAAATTGGCCACACCTGCGGAGTAGCTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTC
CGTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTTACAGCCGTGTTC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACTAGCAGGCGGCGAGAC
GGGTGCTGCGATGCGAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGTATCAGACAACCAACTCTCCC
TGACCAACACCTACTTCCGAACACCGAAAGGTGGGGTGCAGCACACATTC
CATTTCTCCAACAAGGAGAAGGAGAAGTACCGCCTCGACTTCATCCTCAT
GCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCCCCAGCGAAGCGCAGC
ACGACATCTCCGAAGCGTCTAAGGAGATTAAGGCGGCCCAGCAGCAACTG
CGTGGGGCCTCAAAGAACAGCGCCTTCGAGGCGAACCTGAAGGCGATGCT
CAAGGCGGTACGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAA
CGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGGGGGG
GATCAGGCGGGTTTCTACAGGCACCNGTTTATTCGCCAACGGTGGGCACG
GTGGGTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATG
CGGCTGACAATTTCAAGCGGTGGCCCACGTGCGTTCCACTCGACGACATC
CCATCTCCACTTGAGGTTGGGGAAGCGGTACGGGAAATGGCCAACAGAAA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGG
AGCCAAAGACGGAGATCGAGTGTATGCTGCCGACAGGGATCGAGGAACGC
CCGTTCACGGTCAGTGCCGCCAGCCAGACGTACAAGCAGACAGATCGGTT
TGTATACCTCGGACGTACCATATCCACGGACGGGAAGGTCGACCGGGAGA
TCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCT
TCGATGTACGACAGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTTCT
CCAAGCTGAAGTGGTGGAGACTCTTCTGTATGGGTGCGCCTCGTGAAGCC
TAACAGCGGAGTACTACACGAAGCTCAATGGGACCCACCGCCGGTTCATA
CACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCC
TATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCAC
CGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTCGTTATGCGCATGGAGG
ACAGCGACCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTG
GGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGA
CCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAAG
AGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCG
GCATGGTTCATGAGGAAATGACACAGGCAGGAGGCGGAAGCGTCCGCGAA
GCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCATCTCAGAAC
CGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGA
CCGGGCACTGCTGTAAAAGCGAGCAGGGCGGCCGAGGCAGCACTTGTGGC
GAACTATGTACCCAGTTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGT
ATGCTTTACTCCTTTATGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGC
TGTGTTTCTTTTTTTCATGACCTCCCTGCCTACTCTGCTGTGTTGGGTAC
CTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGC
CCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGTTACTCCCACGCCCTGGT
GCGTAGTGCCTGGTGCTGGTACGTTACCCTTTGATTTTTCTTTAGGTGGG
TGTGGGAAACGTCCTCCTTTGTTGTTGTTTTTGTTTTATTTTGATCGGTT
TCCGAGGGCTCTTTTCTCAAACGGTCGGTGCGATACCTCTTCTTT

protein sequence of EsuBft1065_2a-0001

>EsuBft1065_2 ID=EsuBft1065_2|Name=EsuBft1065_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MAVMQICSATSCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGV
HGVGIAIKEAMWESVGEEGRTVECISPTLMRVRLQIGHTCGVAFVVGYAP
TETVRTTAGGDVNAKDSVWTALDAVIREVYSRVHLVVLMDANARTSRRRD
GCCDAKIMGAYGRDIMNNNGERLLGLVSDNQLSLTNTYFRTPKGGVQHTF
HFSNKEKEKYRLDFILMRQTDRRFVRNVPSEAQHDISEASKEIKAAQQQL
RGASKNSAFEANLKAMLKAVRKKRSIARWRALETFFEGYVRQLEKKSRGG
DQAGFYRHXFIRQRWARWVHKLLNTKSPTIDLHAADNFKRWPTCVPLDDI
PSPLEVGEAVREMANRKXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_246:917864..921475+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1065_2a-0001 ID=EsuBft1065_2a-0001|Name=EsuBft1065_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3612bp|location=Sequence derived from alignment at Scaffold_246:917864..921475+ (Ectocarpus subulatus male Bft15b)
ATGGCGGTCATGCAGATTTGTTCCGCGACCAGCTGTGATGTGATAGGACT
TCAGGAGACCAGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGACGCTGATGAGGGTGCGTC
TACAAATTGGCCACACCTGCGGAGTAGCTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTC
CGTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTTACAGCCGTGTTC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACTAGCAGGCGGCGAGAC
GGGTGCTGCGATGCGAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGTATCAGACAACCAACTCTCCC
TGACCAACACCTACTTCCGAACACCGAAAGGTGGGGTGCAGCACACATTC
CATTTCTCCAACAAGGAGAAGGAGAAGTACCGCCTCGACTTCATCCTCAT
GCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCCCCGTAAGACGTGTCG
ACTTCAAAGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCC
CCCCGTGTCGCACCCAACCGACGAGTGCTGGGGAACAGCGGAAGCAGCCG
GATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCG
CCTTCTAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCACAGGCGG
TCAACGGATGAGACCGCCGTCAAGCTGACGGCTACGGTGATGTCGGCCGC
TGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCGGAGAGGCTCGT
ACAGAGCGAAGCGCAGCACGACATCTCCGAAGCGTCTAAGGAGATTAAGG
CGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAGGCG
AACCTGAAGGCGATGCTCAAGGCGGTACGGAAGAAGCGCAGCATCGCGAG
GTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGA
AGAAGAGCCGCGGGGGGGATCAGGCGGGTTTCTACAGGCACCNGTTTATT
CGCCAACGGTGGGCACGGTGGGTCCACAAGCTTCTCAACACCAAGTCGCC
GACCATCGACCTGCATGCGGCTGACAATTTCAAGCGGTGGCCCACGTGCG
TTCCACTCGACGACATCCCATCTCCACTTGAGGTTGGGGAAGCGGTACGG
GAAATGGCCAACAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCATCGTGCGCGTGGCCGGCCTGTT
CGGACTGATGGTATCGGAGCCAAAGACGGAGATCGAGTGTATGCTGCCGA
CAGGGATCGAGGAACGCCCGTTCACGGTCAGTGCCGCCAGCCAGACGTAC
AAGCAGACAGATCGGTTTGTATACCTCGGACGTACCATATCCACGGACGG
GAAGGTCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCT
ACCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAG
CTCAAGATCCGGCTTCTCCAAGCTGAAGTGGTGGAGACTCTTCTGTATGG
GTGCGCCTCGTGAAGCCTAACAGCGGAGTACTACACGAAGCTCAATGGGA
CCCACCGCCGGTTCATACACGGTGCATCGGCTGGAGCAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAG
GAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTT
CGTTATGCGCATGGAGGACAGCGACCTCCCCAAGCGCATGCTGTTAGGAG
CGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTG
TCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGA
AGGGGGTAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACA
AGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATGACACAGGCAGGAG
GCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAG
TACGGCCATCTCAGAACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGG
GGGGGAAGAAACGGCGACCGGGCACTGCTGTAAAAGCGAGCAGGGCGGCC
GAGGCAGCACTTGTGGCGAACTATGTACCCAGTTGATGTTGTTGCGCCCT
GTTTCCCTCCCTGCTGTATGCTTTACTCCTTTATGTATGTCCTTTGTATT
GCCTTCGGCCTCTGTGCTGTGTTTCTTTTTTTCATGACCTCCCTGCCTAC
TCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTG
TACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGT
TACTCCCACGCCCTGGTGCGTAGTGCCTGGTGCTGGTACGTTACCCTTTG
ATTTTTCTTTAGGTGGGTGTGGGAAACGTCCTCCTTTGTTGTTGTTTTTG
TTTTATTTTGATCGGTTTCCGAGGGCTCTTTTCTCAAACGGTCGGTGCGA
TACCTCTTCTTT

Coding sequence (CDS) from alignment at Scaffold_246:917864..921475+

>EsuBft1065_2a-0001 ID=EsuBft1065_2a-0001|Name=EsuBft1065_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_246:917864..921475+ (Ectocarpus subulatus male Bft15b)
ATGGCGGTCATGCAGATTTGTTCCGCGACCAGCTGTGATGTGATAGGACT
TCAGGAGACCAGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGACGCTGATGAGGGTGCGTC
TACAAATTGGCCACACCTGCGGAGTAGCTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTC
CGTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTTACAGCCGTGTTC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACTAGCAGGCGGCGAGAC
GGGTGCTGCGATGCGAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGTATCAGACAACCAACTCTCCC
TGACCAACACCTACTTCCGAACACCGAAAGGTGGGGTGCAGCACACATTC
CATTTCTCCAACAAGGAGAAGGAGAAGTACCGCCTCGACTTCATCCTCAT
GCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCCCCAGCGAAGCGCAGC
ACGACATCTCCGAAGCGTCTAAGGAGATTAAGGCGGCCCAGCAGCAACTG
CGTGGGGCCTCAAAGAACAGCGCCTTCGAGGCGAACCTGAAGGCGATGCT
CAAGGCGGTACGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAA
CGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGGGGGG
GATCAGGCGGGTTTCTACAGGCACCNGTTTATTCGCCAACGGTGGGCACG
GTGGGTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATG
CGGCTGACAATTTCAAGCGGTGGCCCACGTGCGTTCCACTCGACGACATC
CCATCTCCACTTGAGGTTGGGGAAGCGGTACGGGAAATGGCCAACAGAAA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN