EsuBft1065_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1065_19a-0001
Unique NameEsuBft1065_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:798637..799527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0SZG7
ProteomeIdEsuBft1065_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length73
Hectar predicted targeting categoryother localisation
Evalue0.000311
EggNOG OGs2E3PU@1|root,2SAQU@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_19aEsuBft1065_19aEctocarpus subulatus male Bft15bgeneScaffold_246 798637..799527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_19a-0001-exonEsuBft1065_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 798637..799045 +
EsuBft1065_19a-0001-exonagat-exon-19241Ectocarpus subulatus male Bft15bexonScaffold_246 799200..799527 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_19a-0001-exonagat-five_prime_utr-399Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 798637..798669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_19a-0001-cdsEsuBft1065_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 798670..799045 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_19a-0001-exonagat-three_prime_utr-636Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 799226..799527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_19a-0001EsuBft1065_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 798670..799225 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1065_19a-0001 ID=EsuBft1065_19a-0001|Name=EsuBft1065_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=737bp|location=Sequence derived from alignment at Scaffold_246:798637..799527+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCACCTGCGACCTGCCCTGCAGAAGAACGGAAGATGGGGCTGCTGCGCAA
CGGCGCCATCCCGGTGGAGTACCAGGTCGCGATGACGTTGCGATGGCTCG
CGGGGGGGTCCATCTACGAGTGCATGGACGGCCATGTCATCGCGAGGAGT
ACGGCATACCACGTAACGTCGACCGTGATCAACGCCCTGAATGCCTGTCC
GGAGTTGAACTGCAAGTGGCCAGAGGGTGAAGATGCTGCCGGAGCCGCCG
AGCTTTTCCGCAACCGCAGCTCTTATGGATGTCGTCCGGAAGTGCGTGGG
AGCCATGGATGGCTTGTTTGTCCGGATGATCAAGCCGAGCGCGAAGGAGG
TCGCAGAGCCCAACTTATGTTACAACGGGCACAAGAAAGGCTTCGGCATG
AACTTCCAGGTGTGTATGTCCAGATACATGTGTAGATTGTTTCCTTGGTC
GGCGGCCTATCCTGATGCCAGGTGCGTTTTGCCTGCAAAGCAGCGACGGA
CGTACATGTGCTGGGGGGGTAACATCGGTTCAGTACAGCAGTATTCATAC
ATACCTCCGGGTGCGGTTGTGCACGATAGCTCGAACGAAGCTTCCAAGTG
TATTTTTCCACTCCCCAACGCACAGGATTCATCAAAGGGTGCGCACTTTG
TAGGTAGCAGTGTTGTGAGGCGCGTCATGGGCGCATATTTTTGTGCGCAG
GCTGGAATGGGCCTCATTGCTACTACTACTACTACTG
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protein sequence of EsuBft1065_19a-0001

>EsuBft1065_19 ID=EsuBft1065_19|Name=EsuBft1065_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=133bp
MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVIN
ALNACPELNCKWPEGEDAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQ
AEREGGRRAQLMLQRAQERLRHELPGVYVQIHV
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mRNA from alignment at Scaffold_246:798637..799527+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1065_19a-0001 ID=EsuBft1065_19a-0001|Name=EsuBft1065_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=891bp|location=Sequence derived from alignment at Scaffold_246:798637..799527+ (Ectocarpus subulatus male Bft15b)
TCACCTGCGACCTGCCCTGCAGAAGAACGGAAGATGGGGCTGCTGCGCAA
CGGCGCCATCCCGGTGGAGTACCAGGTCGCGATGACGTTGCGATGGCTCG
CGGGGGGGTCCATCTACGAGTGCATGGACGGCCATGTCATCGCGAGGAGT
ACGGCATACCACGTAACGTCGACCGTGATCAACGCCCTGAATGCCTGTCC
GGAGTTGAACTGCAAGTGGCCAGAGGGTGAAGATGCTGCCGGAGCCGCCG
AGCTTTTCCGCAACCGCAGCTCTTATGGATGTCGTCCGGAAGTGCGTGGG
AGCCATGGATGGCTTGTTTGTCCGGATGATCAAGCCGAGCGCGAAGGAGG
TCGCAGAGCCCAACTTATGTTACAACGGGCACAAGAAAGGCTTCGGCATG
AACTTCCAGGTGTGTATGTGATGAACTTCCAGGTGTGTATGTCCAGATAC
ATGTGTAGATTGTTTCCTTGGTCGGCGGCCTATCCTGATGCCAGGNTATG
TTACAACGGGCACAAGAAAGGCTTCGGCATGAACTTCCAGGTGTGTATGT
GATGAACTTCCAGGTGTGTATGTCCAGATACATGTGTAGATTGTTTCCTT
GGTCGGCGGCCTATCCTGATGCCAGGTGCGTTTTGCCTGCAAAGCAGCGA
CGGACGTACATGTGCTGGGGGGGTAACATCGGTTCAGTACAGCAGTATTC
ATACATACCTCCGGGTGCGGTTGTGCACGATAGCTCGAACGAAGCTTCCA
AGTGTATTTTTCCACTCCCCAACGCACAGGATTCATCAAAGGGTGCGCAC
TTTGTAGGTAGCAGTGTTGTGAGGCGCGTCATGGGCGCATATTTTTGTGC
GCAGGCTGGAATGGGCCTCATTGCTACTACTACTACTACTG
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Coding sequence (CDS) from alignment at Scaffold_246:798637..799527+

>EsuBft1065_19a-0001 ID=EsuBft1065_19a-0001|Name=EsuBft1065_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=402bp|location=Sequence derived from alignment at Scaffold_246:798637..799527+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTGCTGCGCAACGGCGCCATCCCGGTGGAGTACCAGGTCGCGAT
GACGTTGCGATGGCTCGCGGGGGGGTCCATCTACGAGTGCATGGACGGCC
ATGTCATCGCGAGGAGTACGGCATACCACGTAACGTCGACCGTGATCAAC
GCCCTGAATGCCTGTCCGGAGTTGAACTGCAAGTGGCCAGAGGGTGAAGA
TGCTGCCGGAGCCGCCGAGCTTTTCCGCAACCGCAGCTCTTATGGATGTC
GTCCGGAAGTGCGTGGGAGCCATGGATGGCTTGTTTGTCCGGATGATCAA
GCCGAGCGCGAAGGAGGTCGCAGAGCCCAACTTATGTTACAACGGGCACA
AGAAAGGCTTCGGCATGAACTTCCAGGTGTGTATGTCCAGATACATGTGT
AG
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