EsuBft1065_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1065_18a-0001
Unique Name	EsuBft1065_18a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:804513..807822 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1065_18
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	331
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_18a	EsuBft1065_18a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 804513..807822 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_18a-0001-exon	EsuBft1065_18a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 804513..807822 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_18a-0001-exon	agat-five_prime_utr-398	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 804513..804594 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_18a-0001-cds	EsuBft1065_18a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 804595..804840 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_18a-0001-exon	agat-three_prime_utr-635	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 804841..807822 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1065_18a-0001	EsuBft1065_18	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 804595..804840 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:804513..807822+
coding sequence from alignment at Scaffold_246:804513..807822+

spliced messenger RNA

>EsuBft1065_18a-0001 ID=EsuBft1065_18a-0001|Name=EsuBft1065_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3310bp|location=Sequence derived from alignment at Scaffold_246:804513..807822+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTTTTTTTTTGGGGGGGTCTCGAAACGTTTTCCGCAATTTGACAACCT
CCTCCGCGTGTTGTGTCCTGGCGCGCCGGTCGATGTCGCGCCGGGGGGGT
GTTTCGACGCCGAATTCAAATACGGCAACCATTCCAGCATTTTACCATAC
ATACACTCCGCAGATCATTGACAAGATCGTTTCGGATGTTACGTTAGGTC
GTGCTCTCGTCTTCGACGTGCAGTTCATCCGTGAAAGTTTGGGTGTGCGT
GTTTCCCCCCTTGGGGTGGTGGACGATCCGAAATTCCGCATCATTCATGA
TCGCACATTCACAGCGGCTGGTGCGTAGTCTAGCGTCAATGCAGATACAG
ATTTTGATCGCCCCCCCGAGTGTCTGTTGGGACATGTACTTTTCGATATC
TTGTCGCGCGTCCTCTTTTTGCGCCAATTGCACGGGCCGACTCTCGAGAT
TTTGCTCTGCCGTGTTGACGTGCGTGAGGCTTTTCGCCAAGTGTTGAGTC
GATCCTTCGAGGGCGTCGGTATTCGGATACACGATGGGGGACGTGGTCGT
CATCGACCTTCGTTGCCAGTTTGGTTGGCGTTCCAGCCCAGGTTTTTGGT
CGCTGTTTGGTTCCGCTCTTGAGCATGCACACACCCACACTACTTTTCAG
ACAGCTTCTGTGTTGCCTGCCGGAGTTGCGGCGGTTGATCATGTTCAGCT
TGTTCCTCCCCAAAACCTCCCCGTATCGTTACCGCGTGATTGTGCCCAAA
TTTCTAAGGAGGGCAGTTTCGCTGGTTCCGCGTTTGTTTTTCGTTCGGTA
TTATGTGGATGACGGTGTGCTTGTCGAGGCGCGATTTTTCACGGATGGTC
GTCGTTGCCTACGTGCAGTGCAGTCGATCGCGTTGGACCATTTCCGTCTG
CTGGGACACCGGGGGCCAAACAATCCTCCGTTGTTGTCTGCAAAGATAAT
CACCGATTTTTCGACGCGTTTGGAGGTGTTGGGATGGATTTTTGACACGA
AAACTCTCAGAGTGACCATGCCTCTGCGAAAACAACAGAAATTACACCGT
TTGTTGGGCGAGTGGCCGCGGTCGCGTCGGTGTGCGACCGCCCGTCACGT
CGCGGAAATGACCGGTTTTCTTCTTCACGTGTCTTTTGCCTTGCGTCCAG
GCAAATTTTTCGTCGGCTGTCTGTTGGCTGACGTCGGCATGCCGCAGTCC
GAGGTGTTCCCTTCGCGTGTTTCTAACCCCAATCGGCGTGTCGTGTTGGG
GCCCATGTTTCACGATGATTTGGATTTTTGGAGCTGGTTTGTGCAGCGAG
GTCTGGCGTCGCGTGGCGGCCAGTTGTGTGCACCGATGTACAATGTGGTG
CTTCGTCCTCCGGTAACGGCTGTGTTTGCCGATGCTTCCAAAACGGCGCT
TGGAGCATACTGCTGTGTGCAAACTGGGTGTTATTTCCGGCGTGATCTGA
CGTGTGACGAGCAGTCCCGCTTTGTGGGGTCTAGCAAGTCTGTATCCGAG
TGTGCCGATGTCAGTATCAATGTTCTTGAGCTACTCGGCATGGTCGCGGC
GGCATGGGTGTTGATTGTGCAACAGCGTCATGTGCCGGTGTCGGCTGGTG
ACTGTATCCAGTTGCGGGGAGACAATGAAGCGAGTGTGGCCTGGATTGAG
CGGTGTCGCGGAGGCAAGGAGCCGCGGTCAGGCGCGCTCATGCGGATGCT
GGGGGCGATTGAAGTGTCTAGCGGATGGTTTTTCCAATCGTCCCATGTGC
CTGGTGTGCTCAATTCGCTTGCTGATGGTAAATCTCGCTGGCCTGCCGCT
GATGTGTACGACAACCTTTGTGCCGCTGCCCCCCATGTACGATGGCAGGA
ATTGGAGTTGAATCGAGCCGGGCAAGAGCTCTGCCGTGCTGGGGCCAGCC
TCGTCCACCAGTCACTTGCGCGAACGTCTGAACGAACTTACCTGGGCCTT
TTTGGANGATGGTTTTTCCAATCGTCCCATGTGCCTGGTGTGCTCAATTC
GCTTGCTGATGGTAAATCTCGCTGGCCTGCCGCTGATGTGTACGACAACC
TTTGTGCCGCTGCCCCCCATGTACGATGGCAGGAATTGGAGTTGAATCGA
GCCGGGCAAGAGCTCTGCCGTGCTGGGGCCAGCCTCGTCCACCAGTCACT
TGCGCGAACGTCTGAACGAACTTACCTGGGCCTTTTTGGAGGCTGGGTGA
AATATCGTGTGATCGTGGTGCACCGGCCGGTTTTTTTATTGCTGCCGAGG
CTGTTCCGCGTGATGTCGTTGCTCAATTGCTTGAGTACGTCGCGTATTGT
TTTTCCGTTTTGGGTCTACAACAATCGACGATCGCTAGTCATTTGTCCGC
TTAAGTTCTTCCATCGTGTGTCGGGTGAAGGGGAGCTTGATACGCAGCAT
CCGCTGGTGCGTTGTGCTTTAGGTGGGGCGGCGCGGGGGCATGCCGACGT
GGGCACACAGCAGCGGTTGCGACGGCCGGTGTCTTGGGCGATGTTGCAAC
GGGGGAGTTCGCTGGTATCGCAATGGGGGGTAGGCGGGCGCGTTTTTTTT
CTTGCGCTGAGTGCTTCTCTCTTCTTCCTGACGCGAGCATCCGGAATGTT
TGCGGTGTCGAAATTGTCTGTGCATGAGGTTCATGGATTGCGTCGGGGGG
ACGTAGCGTTTTTTCGGGGGTTGGTCCAGCTGTTGCAGTCGGCGCAGTGG
CCATTGGCCGATCGCGTGGAGGTACGTTTTCGTTCGTCGAAAGGGGACCA
GTTTCGGAAGGGGGCGGTTTGCACGCGCACACGGCAAGGTCCGTGCTGTG
GGGTTGACCGAGGGGGTGGTGCAGTGGATGTCATGGTGGAGCTGCTTTCT
CTGTATACCTTTTTGCCTTCGCATGCGCCTCTCGTGGCTTTCGGTGTTGG
TCAGGGTCAGTGGGCCATTTGGACTAAGTGTCAAGCTACTGTGTGTGGCT
CTTCGCCAAGTGGTTGCGTTGGCGGGTTTGCAGCCCGAGGAGTACGCGCT
GCACTCCCTGAGAATTGGGGGCGCAACTTTCTTGGCGGCGGGGGGTGCTT
CGCCGGAGGTTCTTCGAAGGGAAGGGCGTTGGTCGGGGCAGAGTAGATAC
CAGTGTTACGTTCGGAATGTTGGGGGTGACGCTTCGTGGGTGTCAGAGGT
GTTGGCGAACAAGGAGAAGGTGACTACACAGCCAGGGTAGGGTACCCGAT
GGGGTGACGTGTGAAGGGCTTCCGTGGCACGTTGTGTATGTCGAGATCCT
TGTTGTACCGATGGTATTTTGCTGTACATATTGTAGGTTGTACATATCGT
ATGTTTTATA

protein sequence of EsuBft1065_18a-0001

>EsuBft1065_18 ID=EsuBft1065_18|Name=EsuBft1065_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MSRRGGVSTPNSNTATIPAFYHTYTPQIIDKIVSDVTLGRALVFDVQFIR
ESLGVRVSPLGVVDDPKFRIIHDRTFTAAGA

mRNA from alignment at Scaffold_246:804513..807822+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1065_18a-0001 ID=EsuBft1065_18a-0001|Name=EsuBft1065_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3310bp|location=Sequence derived from alignment at Scaffold_246:804513..807822+ (Ectocarpus subulatus male Bft15b)
GTTTTTTTTTTTGGGGGGGTCTCGAAACGTTTTCCGCAATTTGACAACCT
CCTCCGCGTGTTGTGTCCTGGCGCGCCGGTCGATGTCGCGCCGGGGGGGT
GTTTCGACGCCGAATTCAAATACGGCAACCATTCCAGCATTTTACCATAC
ATACACTCCGCAGATCATTGACAAGATCGTTTCGGATGTTACGTTAGGTC
GTGCTCTCGTCTTCGACGTGCAGTTCATCCGTGAAAGTTTGGGTGTGCGT
GTTTCCCCCCTTGGGGTGGTGGACGATCCGAAATTCCGCATCATTCATGA
TCGCACATTCACAGCGGCTGGTGCGTAGTCTAGCGTCAATGCAGATACAG
ATTTTGATCGCCCCCCCGAGTGTCTGTTGGGACATGTACTTTTCGATATC
TTGTCGCGCGTCCTCTTTTTGCGCCAATTGCACGGGCCGACTCTCGAGAT
TTTGCTCTGCCGTGTTGACGTGCGTGAGGCTTTTCGCCAAGTGTTGAGTC
GATCCTTCGAGGGCGTCGGTATTCGGATACACGATGGGGGACGTGGTCGT
CATCGACCTTCGTTGCCAGTTTGGTTGGCGTTCCAGCCCAGGTTTTTGGT
CGCTGTTTGGTTCCGCTCTTGAGCATGCACACACCCACACTACTTTTCAG
ACAGCTTCTGTGTTGCCTGCCGGAGTTGCGGCGGTTGATCATGTTCAGCT
TGTTCCTCCCCAAAACCTCCCCGTATCGTTACCGCGTGATTGTGCCCAAA
TTTCTAAGGAGGGCAGTTTCGCTGGTTCCGCGTTTGTTTTTCGTTCGGTA
TTATGTGGATGACGGTGTGCTTGTCGAGGCGCGATTTTTCACGGATGGTC
GTCGTTGCCTACGTGCAGTGCAGTCGATCGCGTTGGACCATTTCCGTCTG
CTGGGACACCGGGGGCCAAACAATCCTCCGTTGTTGTCTGCAAAGATAAT
CACCGATTTTTCGACGCGTTTGGAGGTGTTGGGATGGATTTTTGACACGA
AAACTCTCAGAGTGACCATGCCTCTGCGAAAACAACAGAAATTACACCGT
TTGTTGGGCGAGTGGCCGCGGTCGCGTCGGTGTGCGACCGCCCGTCACGT
CGCGGAAATGACCGGTTTTCTTCTTCACGTGTCTTTTGCCTTGCGTCCAG
GCAAATTTTTCGTCGGCTGTCTGTTGGCTGACGTCGGCATGCCGCAGTCC
GAGGTGTTCCCTTCGCGTGTTTCTAACCCCAATCGGCGTGTCGTGTTGGG
GCCCATGTTTCACGATGATTTGGATTTTTGGAGCTGGTTTGTGCAGCGAG
GTCTGGCGTCGCGTGGCGGCCAGTTGTGTGCACCGATGTACAATGTGGTG
CTTCGTCCTCCGGTAACGGCTGTGTTTGCCGATGCTTCCAAAACGGCGCT
TGGAGCATACTGCTGTGTGCAAACTGGGTGTTATTTCCGGCGTGATCTGA
CGTGTGACGAGCAGTCCCGCTTTGTGGGGTCTAGCAAGTCTGTATCCGAG
TGTGCCGATGTCAGTATCAATGTTCTTGAGCTACTCGGCATGGTCGCGGC
GGCATGGGTGTTGATTGTGCAACAGCGTCATGTGCCGGTGTCGGCTGGTG
ACTGTATCCAGTTGCGGGGAGACAATGAAGCGAGTGTGGCCTGGATTGAG
CGGTGTCGCGGAGGCAAGGAGCCGCGGTCAGGCGCGCTCATGCGGATGCT
GGGGGCGATTGAAGTGTCTAGCGGATGGTTTTTCCAATCGTCCCATGTGC
CTGGTGTGCTCAATTCGCTTGCTGATGGTAAATCTCGCTGGCCTGCCGCT
GATGTGTACGACAACCTTTGTGCCGCTGCCCCCCATGTACGATGGCAGGA
ATTGGAGTTGAATCGAGCCGGGCAAGAGCTCTGCCGTGCTGGGGCCAGCC
TCGTCCACCAGTCACTTGCGCGAACGTCTGAACGAACTTACCTGGGCCTT
TTTGGANGATGGTTTTTCCAATCGTCCCATGTGCCTGGTGTGCTCAATTC
GCTTGCTGATGGTAAATCTCGCTGGCCTGCCGCTGATGTGTACGACAACC
TTTGTGCCGCTGCCCCCCATGTACGATGGCAGGAATTGGAGTTGAATCGA
GCCGGGCAAGAGCTCTGCCGTGCTGGGGCCAGCCTCGTCCACCAGTCACT
TGCGCGAACGTCTGAACGAACTTACCTGGGCCTTTTTGGAGGCTGGGTGA
AATATCGTGTGATCGTGGTGCACCGGCCGGTTTTTTTATTGCTGCCGAGG
CTGTTCCGCGTGATGTCGTTGCTCAATTGCTTGAGTACGTCGCGTATTGT
TTTTCCGTTTTGGGTCTACAACAATCGACGATCGCTAGTCATTTGTCCGC
TTAAGTTCTTCCATCGTGTGTCGGGTGAAGGGGAGCTTGATACGCAGCAT
CCGCTGGTGCGTTGTGCTTTAGGTGGGGCGGCGCGGGGGCATGCCGACGT
GGGCACACAGCAGCGGTTGCGACGGCCGGTGTCTTGGGCGATGTTGCAAC
GGGGGAGTTCGCTGGTATCGCAATGGGGGGTAGGCGGGCGCGTTTTTTTT
CTTGCGCTGAGTGCTTCTCTCTTCTTCCTGACGCGAGCATCCGGAATGTT
TGCGGTGTCGAAATTGTCTGTGCATGAGGTTCATGGATTGCGTCGGGGGG
ACGTAGCGTTTTTTCGGGGGTTGGTCCAGCTGTTGCAGTCGGCGCAGTGG
CCATTGGCCGATCGCGTGGAGGTACGTTTTCGTTCGTCGAAAGGGGACCA
GTTTCGGAAGGGGGCGGTTTGCACGCGCACACGGCAAGGTCCGTGCTGTG
GGGTTGACCGAGGGGGTGGTGCAGTGGATGTCATGGTGGAGCTGCTTTCT
CTGTATACCTTTTTGCCTTCGCATGCGCCTCTCGTGGCTTTCGGTGTTGG
TCAGGGTCAGTGGGCCATTTGGACTAAGTGTCAAGCTACTGTGTGTGGCT
CTTCGCCAAGTGGTTGCGTTGGCGGGTTTGCAGCCCGAGGAGTACGCGCT
GCACTCCCTGAGAATTGGGGGCGCAACTTTCTTGGCGGCGGGGGGTGCTT
CGCCGGAGGTTCTTCGAAGGGAAGGGCGTTGGTCGGGGCAGAGTAGATAC
CAGTGTTACGTTCGGAATGTTGGGGGTGACGCTTCGTGGGTGTCAGAGGT
GTTGGCGAACAAGGAGAAGGTGACTACACAGCCAGGGTAGGGTACCCGAT
GGGGTGACGTGTGAAGGGCTTCCGTGGCACGTTGTGTATGTCGAGATCCT
TGTTGTACCGATGGTATTTTGCTGTACATATTGTAGGTTGTACATATCGT
ATGTTTTATA

Coding sequence (CDS) from alignment at Scaffold_246:804513..807822+

>EsuBft1065_18a-0001 ID=EsuBft1065_18a-0001|Name=EsuBft1065_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_246:804513..807822+ (Ectocarpus subulatus male Bft15b)
ATGTCGCGCCGGGGGGGTGTTTCGACGCCGAATTCAAATACGGCAACCAT
TCCAGCATTTTACCATACATACACTCCGCAGATCATTGACAAGATCGTTT
CGGATGTTACGTTAGGTCGTGCTCTCGTCTTCGACGTGCAGTTCATCCGT
GAAAGTTTGGGTGTGCGTGTTTCCCCCCTTGGGGTGGTGGACGATCCGAA
ATTCCGCATCATTCATGATCGCACATTCACAGCGGCTGGTGCGTAG