EsuBft1065_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1065_17a-0001
Unique NameEsuBft1065_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:810812..817012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGR3
ProteomeIdEsuBft1065_17
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length154
Hectar predicted targeting categorysignal peptide
Evalue3.73e-104
EggNOG OGs2E4HK@1|root,2SBRH@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005330.1
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_17aEsuBft1065_17aEctocarpus subulatus male Bft15bgeneScaffold_246 810812..817012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_17a-0001EsuBft1065_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 811722..815593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_17a-0001-exonagat-exon-19238Ectocarpus subulatus male Bft15bexonScaffold_246 810812..811787 -
EsuBft1065_17a-0001-exonagat-exon-19236Ectocarpus subulatus male Bft15bexonScaffold_246 812446..812591 -
EsuBft1065_17a-0001-exonagat-exon-19240Ectocarpus subulatus male Bft15bexonScaffold_246 813323..813404 -
EsuBft1065_17a-0001-exonEsuBft1065_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 814140..814256 -
EsuBft1065_17a-0001-exonagat-exon-19239Ectocarpus subulatus male Bft15bexonScaffold_246 815549..815699 -
EsuBft1065_17a-0001-exonagat-exon-19237Ectocarpus subulatus male Bft15bexonScaffold_246 816941..817012 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_17a-0001-exonagat-three_prime_utr-634Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 810812..811721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_17a-0001-cdsEsuBft1065_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 811722..811787 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_17a-0001-exonagat-five_prime_utr-396Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 815594..815699 -
EsuBft1065_17a-0001-exonagat-five_prime_utr-397Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 816941..817012 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1065_17a-0001 ID=EsuBft1065_17a-0001|Name=EsuBft1065_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1544bp|location=Sequence derived from alignment at Scaffold_246:810812..817012- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGACCAACCAGCGATTAAAGCTACCAGAAGGAGGGCCAATACAGCATACT
CAGACTAGCAACCCCAGTGCCGGAACGCAGACTCGCGAACTCTTTGATTT
TGCGAGAAGGGAGAGTTTCCTTGTCGTGGAAGAACGGACGCGTGCGGGAC
ATACATACATTTTCGAAAAGCTGCAACAATGGTTGAGTTTTCCCCACTAC
CGGTGCTCTTCGTTTCCAGCGTGCTCTACACAATCTCAGCGTTCGACGCC
GAGGGCGGCGATGGCAACGGGACCAAGGCCTGGGCTATCTTCTGCGGCCT
CATCTCCTCCTTTGTCAGCGGAATCCTGGCATTCTTGCAGGCACGGGGTA
AGGGAGACATGATCCACAAGTTCCAGAAGTTCATCGCTCTCTTTTTCTTC
CTCTGGTGGACTCTCGGAGCCGGCATCGGGACGTTCAAGGGGCCCTTTAC
GATCTCAGGAAACGGTTACTTCGCGGGTTGGATCGCCTTCGCGGCCTCCC
TCAAGTACGCCTACGGCACCAACGAAGCCGTCAGGGGCTTCGCCGACCGC
GCCGCTGACGCAATGAAGGAGCACCAACCGACGGACCCGGACGGGGGCTT
CGACCCGCAAGACCAGGCGGAGGCATACGCTTAAGTCCAAAGCAGCAGCA
GCCGCGAGATGTTGGAAGTAGCTATGATGGGAAAAATGGACAACGGCCAG
CATCGAAACGACGACTTGAGAAGCAGAGACATGGCAACAAATCGACAACC
TGGAGCGAGCTCGTTGGCAAGGAATAGCTGAGAGTTGGTCGGGAAGCGGG
CAGCTATTCGGTGTCCAATAAGCTGACGCGTGGGGCGGGATTATTGATTG
ATGTTGCGCGCAAAAAGAAGCAGATGTCGCTCGCGAGCCACACCGGGAGC
TTCCGCGCACCAGTCAGGAAAACAAGCGTGGGGCTGAGGCCCACAAGCAC
GTGGTGTACGGCCGTTGTTGTTGTCGTATATTTCTCTGCTGTTGGTTTGT
GTTCATGTGTTTGTCTTAGTGTACATCGAGACATCCAGTGCGGTGTGGTG
AATACATGCGCATACGTCGAGGGGAACGCATACGTCGAGGGGACGTCAAG
AGCTTTGGCTCGCTGGTGGGCAGGTTTGCAAGGCCCAAGCACCGCGCGAT
AAGCAAGGTGATGGGTATAGGGGATAGGCAGCAGCAGCATAGCAGTGATA
GCACTTGGAGTAGATGGGTGGCACGCGGAGGACGTGGAAGGGGAGGAAAT
GAGCGGTCGTCCCTTGCGGAATGATAACAGGTGGGGTCGGACGAGTGCCG
CTCAGAACGTGTCCTTCACGCTCAAAACTCTTTTAATCTTTCAAGCAGCT
GGTGGCTTGTTCGATGAAACAATTATCCATTCGTGGAAACAAACAATTGT
TGACTTGATGCCATCAACCACTCACGTCAGCCCCCACGATACGCGTTGGT
TGCCTGAGAGAGATACGTCAAATGAGGCATGGAAAAGGGGCACAAAAATT
CATGACGCACACGAAACAGGCAGAAATGCTCATCAAACGCTTTC
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protein sequence of EsuBft1065_17a-0001

>EsuBft1065_17 ID=EsuBft1065_17|Name=EsuBft1065_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MVEFSPLPVLFVSSVLYTISAFDAEGGDGNGTKAWAIFCGLISSFVSGIL
AFLQARGKGDMIHKFQKFIALFFFLWWTLGAGIGTFKGPFTISGNGYFAG
WIAFAASLKYAYGTNEAVRGFADRAADAMKEHQPTDPDGGFDPQDQAEAY
A
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mRNA from alignment at Scaffold_246:810812..817012-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1065_17a-0001 ID=EsuBft1065_17a-0001|Name=EsuBft1065_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6201bp|location=Sequence derived from alignment at Scaffold_246:810812..817012- (Ectocarpus subulatus male Bft15b)
CGACCAACCAGCGATTAAAGCTACCAGAAGGAGGGCCAATACAGCATACT
CAGACTAGCAACCCCAGTGCCGGTGAGTGCGTCCCGTCTCCTCGGCTGCT
GCATGCCTTGTATTGCCTATTGCTTGGTTTGAGAACTTTTGAGAAAGGAC
GCGTGCACACGGCACACGGCCTTCCAATGGGCAGATATCGCTCATCGTTT
GAGCCCCAGAGAAGCAAGAAGTGAGCAGACATATCTGCCTTTCCCGTGTG
CCAAGCATGGGATTGCCGTGGGTCAATGGTGCGGGAGAGCATGCTCGAAG
GACCAGTCTGCACTGGGCAGCAGCGGTGCAGTGTCGCAGCACCTGCACGT
GTGTCTACTCTTTCTCTCTCTCTTCCGCTGTCCCTACTCGCCGTGTTCCG
CCTCTCCAAAAATATAACGCTTTTTTCCTCTTTTTTTATCGAAGCCCCGC
GCGTCCTTCCGCGGATGCGACGGCGGCGAATAGCAAGTTGGCGTTTTGCG
GCTGGGAACTCGCTGCTGCACGTGCGTCTTTCAATGTCCCGTTCTCATGA
GAGGACACGACATCACTTTTCGTGATGGATGCACGCTTTTTGCTGTTGCT
GTTGATGTGTTCCGTTTGTCGGCGAGGTCTTGTTCTAGCTTATTCACTGG
GTCTCTCTTTCAGCGTGTATGTTTTGCCCAGTTAGTCGGACGCGTTGGTC
GACTCCCGCACCAAGCTCGGCGACCGTCACCATAGTCGCGGGATGCGACG
CGCAAGTAAGACTGGGATCTGTTGGTCGTCCGCATGTAAAAGTAGAGGCC
GCTCTTCCCCTTGTTTTCGTGCCCCCTTTGGTATGTATTTGTATCGGTGT
GCATCTCAAAGCTCCGATGTAGTCGTTGTTGTGTGGTATGTGCTACTGCT
GTGTATGGGACCCACGGCCGCTCTCCTTTTTGCACAGGGAGAGAGAGTTT
GTTGTTTGCCGAGTATTATAATTCCACAAGGTTTTTTTTCGCCGCGTATC
CGCACACCGCGACAACGCCCGCTGCACCGCGCGATTTTATCTTCATCGTG
TCCTTCCACTACGCGACTCGAGTGCTTGCTGCATTTGCTTCACCCATCCC
CAAGCCCGTAAGGCGCTCCTCATCAACCTGTATTTTGCAGCAGCAGTCGA
TATCAGATTTTGTGATCCCGCCCGTTGCGTTTGACGATAGCCCTCGAAAG
TCTTTCCGCCCCACCCCCGTCCCCCTCTTGACTCGCTCTTGCCCGCTGTG
CTATCTGTCTTGTGTCCCCCTGCTGTCACACGCCCAATGATACTTCTTTT
TAATTGGGACCAGGAACGCAGACTCGCGAACTCTTTGATTTTGCGAGAAG
GGAGAGTTTCCTTGTCGTGGAAGAACGGACGCGTGCGGGACATACATACA
TTTTCGAAAAGCTGCAACAATGGTTGAGTTTTCCCCACTACCGGTGCTCT
TCGTTTCCAGCGTGGTGAGTTCAAGATGTTTTACGTTTCCTGGTGTTTTC
ACTCTACGGAGAATTTTTTCCTGATTTTTTGATGAGGTCTGGGTGGCAGG
ACACATGTTTCGGCGAGGCGATCATCGTCATCGCCAACAGCCAGGAACAG
AAAAACATGAGCGTCCAGTGTGGGCGTTGGGGGCAAACGCGCACAGCCCC
AGGATCCACCCGCTCAAAGACACCACTGCGTGCTGCGTGTTCTTTCGCCT
TCCACGAGGGTGGCACTTTTTCGTTGCATGCAGACGGCGGCGCACGGTTT
GTCTCCGAAGGGGGGGGCGGGATGGGCCTTTACGTGTCTGAATGTCAGCG
TAGCCGCCTTCTTCTCCGCACCAGTTCTCCTCGGGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGCGATCTCCGGAGTAGTGT
TTGAAATAGTGTAGTTTATATCGCGCTGGAAATGGACGGCTGATGATTGG
ACCAGCACTCGGCTCGATCGATGCTCGTTCATGTTCTTCATCCGTGGATA
AGATGGGGCACGCTTGTGCGGCGGGCGGGAGGGGAAGGGGGGGATATGCT
CTTGAACCCTTCAACCGCCGACCACATGAGCTTGTACTCTCATCCGGCTT
GTCTTACTGCTTACGCGCGGGCTTGACTGGAATTGCTTTCCGAAGTAAAA
GGCATCTGTATGATACCCGTGCGACTAAACGCCGATATCGAGCTTAGTGC
ATAGGGGCTGCTGATTGCGTATCGTCGAGTGCTGGGTTGAATGACGCTTG
TTCAACGGCACAGCCACTTGTAGCGTAAAGGTGAAGACACCACGTCGGTG
GTGTTGAAAGCGAGATCCGTACAATAGCGCCAACAACACGCGTGTCCCTC
GGAGCGGACCCTTACCACCTTATACATATCGTCGAAAGTTGTTGTTGTCG
TCGTTGGTGAGGGCACACACAAACATGGCACTCGTTACGCCGTTGTCGGC
GTCGCCTCGGAGACGATTACCGACGCGCTGGCGTCGTGCCGTGGTCGAGT
GGTTGGTCTCACGGATAGCGGATAGGTGCCAACTTTTATCGTTGTTGTTC
TGTTCTAGCGTAGGTTCGGCTTGTCTGTCTGTGCTGTCTTGCGGCCATTC
TTGTTCTATCTATATCTGTCTGCCTGTCGGTCTACCAGAGTCGTTGTCGT
TCCTAACGATGGTCTATTTTTCTGTCTTTTTTTGACGCGACGCATCGACT
CCTGAGCTCTACACAATCTCAGCGTTCGACGCCGAGGGCGGCGATGGCAA
CGGGACCAAGGCCTGGGCTATCTTCTGCGGCCTCATCTCCTCCTTTGTCA
GCGGAATCCTGGCATTCTTGCAGGTACTTGACAGCGGGCGAACTGTGCTG
TATAGGTTCGAGCGAGCAAGCCCGCCCTTTTTGTCGTTGCGTGTTTTTGG
CGGCCCGTCCTTGTGTGAAGATGACCGCAAGGAACTGTTCACGTCTCCCC
GAGGTTTGCGGAGGATGTTTCCCTGTTTCACACGGGCTGTTGCTACAGGC
TGGTCGCGTTGCCGATGATGCCGTTCGCTGTTGCTATTTTGACACTGCAG
TGTGTGTGCTGGTGATTGCATTTTTTTTTTTTAGTTGTCGCTTTCCCACG
TGAAGATGAGAGAATGAGCGTCCAGCCGATGGTATTGGTGGTGCGCTTTC
TTTTCCACCGTCCTCGGTACGGTACGAGTTTGCTCGCGATACTTGTCCCC
AGCACTCATGTAGAAGTAAAGCGAGCGCGTGTCGATTCTGTCGCCTGCTC
AGTTGCACTTGGGAAGATTCTGTAGAGGAAAATCCCGCTACGGTACCTGT
ATGCTGCCCGCTCTAGGAGTACCAGGGCTGACGGTACTTGTAGTCCGTTG
GGCTTGCCGACGGTTGTTCGATACCGTCCTCAGCTTCCTTTTTTTTTCTG
GTTCTGACTTTTTTACCACTCATTGAGGACGTGATGTCGTGTAGACGTGA
CGTCGTTTTCTTGCCCTTGGTGAACCTGACGGTTTCCTTCTTGACCTTGC
CCCCCCCCCCTATATCTTCGGTCCTTGCGATATGCCGACGCTGCTGCTGG
GTGCGTAGGCACGGGGTAAGGGAGACATGATCCACAAGTTCCAGAAGTTC
ATCGCTCTCTTTTTCTTCCTCTGGTGGACTCTCGGAGCCGGTAAGCAGGC
ATAACCCCCCGCCGGGCCTGGCTAGTGAAAAATTGGACATATGCCGCCTC
GCTTGGCACGGATGTAACGGTGTGAATGGTTCAAACAAGAGATAACAGAC
TTGCATTATATCCTCTTATCTTTTTTTGTACATTGAATTTCTTGAATTTT
GCCTACCAGAAGCTGAAAGCCGGCGTTGTCATCACCCCCGTCAATGTTGA
GGCTTTGAAGCCTTAACGCCTGAAGCGTACCCCGGAAGGATTGAGCTTGG
TCTCTCGTTCCTTGGAAGTGCCGAGGAATCTCCGCTCATGCGTGTACATT
TAGTGCGTGTATCCGCGGAGAGAGTTCATTCAGGCCCCGGAAATTGTTGT
ATGGTTTGCGATGGATGGAACATTGGGCGGGAGAAGAAACGGTGTTCGAG
ATGATGCGCAACAAGCAGCAAAGCTAATAGGCCACTTTTGCAGCAAAGCT
AATAGGCCATTTTTTGTGTTTTGTTTAGCTGTTTCCGAGCGCGTCACGCC
GAAAATCTAAATGCACATGGAAATAGATTACACCCTTTGCCCCGATTTCT
ATCGCCGTGTATGAAAGTAAAATGTCGGACGGTCGCACAATTCACCCACA
GACAATACACGGATGAACGGGCGCACAGTTGCACTTCGAAAATGAATAGG
GTAGGCACAACGCCGATGATGATAAGAAAATAATGAGATAACCAAGCTTC
ATTTTCGTACGCGTGTCGCAGGCATCGGGACGTTCAAGGGGCCCTTTACG
ATCTCAGGAAACGGTTACTTCGCGGGTTGGATCGCCTTCGCGGCCTCCCT
CAAGTACGCCTACGGCACCAACGAAGCCGTCAGGGGCTTCGCCGACCGCG
CCGCTGACGCAATGAAGGTGCTTGCGGCTCTCTTGTTTCCCGCCCCCCCC
TGTATGACATTCAGGTGTCTCATAAGGTGGAGGTAGTTATCTTGTTCGTT
TCTCCCCCTTGTATGACTAGGGTGTCTCGCGACTTTTTGGGTATCTTGTC
ACGGCCGCTCTCCTGTTCCCCCCCCTGCTTGACTTTCGTTGCTCTTGGGA
GCGTGCCGCTTGTTTGTGTTCCGTGGCCGAATCCTGTGCTTCTCCTGCGG
TCCGTGTTGCCGAACAAGTTAGAAGTGCGTCTTTTTTTCGGTGTTGGAGT
GGTCGCGAGGCTGCCTTCAATGATGCCACCTTGATTAGTTCGGCGATGGT
TTTGTCCGTTCGAGTAGGGGTGTTTGGGGGATTCTGGGGATTTCGAGAGA
AATCAAAACTCTATGTTATTTGATCGTTAGAAGATGAGTGGTTCAACTGC
TGTACATGCATACTCTGGCCGCGCGGTCTACACGACAGAAATAGGCAAGT
GTCTTCGGCTGACCCGTGTTGTTGTGCAACTGCTTTCGCCAGTTTCGTTT
GTGTGACGTTTGTGCCTTCCTGTCTTTTCGAGCTTTGCCAAGTGTTTTTA
CCAGAGCAATCCGTGTGACCGGACTATTTGGTTGTTTCATTTCTCTCACC
GTACCTTTCGCTTCCCTGTCGACAGGAGCACCAACCGACGGACCCGGACG
GGGGCTTCGACCCGCAAGACCAGGCGGAGGCATACGCTTAAGTCCAAAGC
AGCAGCAGCCGCGAGATGTTGGAAGTAGCTATGATGGGAAAAATGGACAA
CGGCCAGCATCGAAACGACGACTTGAGAAGCAGAGACATGGCAACAAATC
GACAACCTGGAGCGAGCTCGTTGGCAAGGAATAGCTGAGAGTTGGTCGGG
AAGCGGGCAGCTATTCGGTGTCCAATAAGCTGACGCGTGGGGCGGGATTA
TTGATTGATGTTGCGCGCAAAAAGAAGCAGATGTCGCTCGCGAGCCACAC
CGGGAGCTTCCGCGCACCAGTCAGGAAAACAAGCGTGGGGCTGAGGCCCA
CAAGCACGTGGTGTACGGCCGTTGTTGTTGTCGTATATTTCTCTGCTGTT
GGTTTGTGTTCATGTGTTTGTCTTAGTGTACATCGAGACATCCAGTGCGG
TGTGGTGAATACATGCGCATACGTCGAGGGGAACGCATACGTCGAGGGGA
CGTCAAGAGCTTTGGCTCGCTGGTGGGCAGGTTTGCAAGGCCCAAGCACC
GCGCGATAAGCAAGGTGATGGGTATAGGGGATAGGCAGCAGCAGCATAGC
AGTGATAGCACTTGGAGTAGATGGGTGGCACGCGGAGGACGTGGAAGGGG
AGGAAATGAGCGGTCGTCCCTTGCGGAATGATAACAGGTGGGGTCGGACG
AGTGCCGCTCAGAACGTGTCCTTCACGCTCAAAACTCTTTTAATCTTTCA
AGCAGCTGGTGGCTTGTTCGATGAAACAATTATCCATTCGTGGAAACAAA
CAATTGTTGACTTGATGCCATCAACCACTCACGTCAGCCCCCACGATACG
CGTTGGTTGCCTGAGAGAGATACGTCAAATGAGGCATGGAAAAGGGGCAC
AAAAATTCATGACGCACACGAAACAGGCAGAAATGCTCATCAAACGCTTT
C
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Coding sequence (CDS) from alignment at Scaffold_246:810812..817012-

>EsuBft1065_17a-0001 ID=EsuBft1065_17a-0001|Name=EsuBft1065_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=456bp|location=Sequence derived from alignment at Scaffold_246:810812..817012- (Ectocarpus subulatus male Bft15b)
ATGGTTGAGTTTTCCCCACTACCGGTGCTCTTCGTTTCCAGCGTGCTCTA
CACAATCTCAGCGTTCGACGCCGAGGGCGGCGATGGCAACGGGACCAAGG
CCTGGGCTATCTTCTGCGGCCTCATCTCCTCCTTTGTCAGCGGAATCCTG
GCATTCTTGCAGGCACGGGGTAAGGGAGACATGATCCACAAGTTCCAGAA
GTTCATCGCTCTCTTTTTCTTCCTCTGGTGGACTCTCGGAGCCGGCATCG
GGACGTTCAAGGGGCCCTTTACGATCTCAGGAAACGGTTACTTCGCGGGT
TGGATCGCCTTCGCGGCCTCCCTCAAGTACGCCTACGGCACCAACGAAGC
CGTCAGGGGCTTCGCCGACCGCGCCGCTGACGCAATGAAGGAGCACCAAC
CGACGGACCCGGACGGGGGCTTCGACCCGCAAGACCAGGCGGAGGCATAC
GCTTAA
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