EsuBft1065_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1065_15a-0001
Unique NameEsuBft1065_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:825769..828780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2903.EOD30830
ProteomeIdEsuBft1065_15
Protein domainsPTHR14614
Protein domainsIPR029063
Protein domainsIPR019410
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length112
Hectar predicted targeting categoryother localisation
Evalue4.08e-08
EggNOG OGsKOG2793@1|root,KOG2793@2759|Eukaryota
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-07_005350.1
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K21805
Descriptionlysine N-methyltransferase activity
COG categoryS
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_15aEsuBft1065_15aEctocarpus subulatus male Bft15bgeneScaffold_246 825769..828780 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_15a-0001-exonagat-exon-19229Ectocarpus subulatus male Bft15bexonScaffold_246 825769..825940 -
EsuBft1065_15a-0001-exonagat-exon-19228Ectocarpus subulatus male Bft15bexonScaffold_246 826819..827384 -
EsuBft1065_15a-0001-exonEsuBft1065_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 828398..828780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_15a-0001-cdsEsuBft1065_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 825769..825940 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_15a-0001-exonagat-five_prime_utr-394Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 828683..828780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_15a-0001EsuBft1065_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 825769..828682 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1065_15a-0001 ID=EsuBft1065_15a-0001|Name=EsuBft1065_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1121bp|location=Sequence derived from alignment at Scaffold_246:825769..828780- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCACATCCACGCCGAGGGATCGGACACAAGCGTAGCACATCCATCCC
TCGTTCTCCGGAGGTGCTGCAAGTTGATCACCCACACGGGTCGCGAGTAT
GCCAGTGGTGCTGTCGTCTCGCTGGGGGATAGAACCGGTGGCTGTTGGCA
CCGCCTGCACCGACGATGGTCCTTTGCCGCTTCCCTTCGAAACGTCCGCA
ACAACGGCAGCAGGAGAGGTGGGGACACGGCAAGATTATTGCTGTGATGA
CCGTGGTATTGGTGAGGACGGAGATGAAGAAGACATGGAGCTCACGGGCA
GAACGCTGTGGGACTGTACCCAAGTGCTGTGGGATTTAGTCGCAGACCCC
CGCAAGGACAACATGTTCACGGTCAGAGACAAGCGCGTGATCGAGCTCGG
CGGAGGCACGGGAGCCCTGTCCGTGGGCCTAGCGCGGTCTGGGGCTGCGT
CGGTTACTTGCACGGACCTCCCGTGCCATCTAGTACGCATACGATCGACG
GTGCTCGCCAACGCTCGAACGAGCACCAGCTGTCGCCGAGGTGTTCCAGC
CAGTGACGTTGATGTTGGTGGAGACTGTGGCGGCGTTGTAGCGGGAACAG
TGAACCGTGGGAGCGACCTGCCAGCGGCGACAGGAGTACCGACAGCAGCC
ACGCGAGAGGCTAGAGTTTGCGTGGTAGCCCTGCGGTGGGGTGAAGCGGA
AGACATCGCGAACGCACGGGCATCACCGTGCAACAACCATAGCGGTGAAG
GCAGAAGATGTAGCAGCAGCAGTGGCGGTGGCGGCGCAAGCGATGACGAG
TCTTGGGCGTTCGACGTGATCGTGCTCAGCGAGGTGCTGTACTGGCCCGC
GCTGGACCTGCTGCAGGAGGACACGAGAGAGCCTTTGCGGCGCACTCTGG
TGGGACTCTCCAAGCCCGGGACAAAGGTCATCCTGATCTACAAGGAGAGG
TGGCCAGAGCGAGAGGCGGAGTTTCTAAGGTCGTGCGAGGCGTCTTTTGA
AGTGGGGGACATCCCGGCGGACCTTTTGGCTATGCCGACGGCCTCCACAG
AGGACCCTGGTTCCGCGGCGATCAGGGCGGTGGTTATGGTTCGCCTGCCG
CTACAGAGAGATGAGCAATGA
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protein sequence of EsuBft1065_15a-0001

>EsuBft1065_15 ID=EsuBft1065_15|Name=EsuBft1065_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=340bp
MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSATTAAGEVGTRQDYCCD
DRGIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIEL
GGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTSTSCRRGVP
ASDVDVGGDCGGVVAGTVNRGSDLPAATGVPTAATREARVCVVALRWGEA
EDIANARASPCNNHSGEGRRCSSSSGGGGASDDESWAFDVIVLSEVLYWP
ALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASF
EVGDIPADLLAMPTASTEDPGSAAIRAVVMVRLPLQRDEQ
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mRNA from alignment at Scaffold_246:825769..828780-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1065_15a-0001 ID=EsuBft1065_15a-0001|Name=EsuBft1065_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3012bp|location=Sequence derived from alignment at Scaffold_246:825769..828780- (Ectocarpus subulatus male Bft15b)
GCAGCACATCCACGCCGAGGGATCGGACACAAGCGTAGCACATCCATCCC
TCGTTCTCCGGAGGTGCTGCAAGTTGATCACCCACACGGGTCGCGAGTAT
GCCAGTGGTGCTGTCGTCTCGCTGGGGGATAGAACCGGTGGCTGTTGGCA
CCGCCTGCACCGACGATGGTCCTTTGCCGCTTCCCTTCGAAACGTCCGCA
ACAACGGCAGCAGGAGAGGTGGGGACACGGCAAGATTATTGCTGTGATGA
CCGTGGTATTGGTGAGGACGGAGATGAAGAAGACATGGAGCTCACGGGCA
GAACGCTGTGGGACTGTACCCAAGTGCTGTGGGATTTAGTCGCAGACCCC
CGCAAGGACAACATGTTCACGGTCAGAGACAAGGTACATGACGTTTGCGT
GCTATGCGTATAGACTTTGTAGGCATGTACAACCATTTGGACAACATGCT
CACGATGTTGTTGCCGTTTTTTCCAGGATTGTCCAACCCCCCAATGGCAC
GTTTGTTCAATAGCTTGCTGGGCCTCGCGTTCAAGGACGTTGAAGGAAAT
ACTTGATTTCGGTAGAAAGTGGTGCCAGCGAGCTCGCCCCATGCATGAGC
CAATAGGATACAAAGCAATGGTGCCGCGGTCCGATCATACTTCGGCAAGA
TAAGCCAGTTTTGTTCTGAAGTAAAGAAACGGCGAAAAAAACAGGGGGCA
GACGCGGGGCCGCCGGCACCTCGCTATCTCCTACGGTATTCGGTAGCCCA
GAAATACCTCGAGCTCCAGAGTAGATGTGGTGCACGAGCGGACCGACACT
GCTATAGTAGTCGTTGTCGCGTGCGGAGTCGCCAGCGAACACGAGACGCG
CGCAGCGCAACGTGAAACAATGGCTGTCAGCATCCGGTGCAACATTTCAG
TTTTGCTCACCCATCCTCAACTCGCGGGGTGTCCGCGCCACGCCGAGTTA
TTTGGTCCTACAAAACGTGGGTGCCCCCCCCCCCCCATCAGCGTCCTCCT
CGTGAGTCTTCCCTGATTCATCATTCTCCATCAATGGATCTGCTCGGTAC
AACAGGTCACCGTCGACTACCGAGCTCACACCGCTCTTCGATGACAGAAG
TGATGCGCCCGTTTCGAGTCTTCTCAATCTCTACAAAAATGTGGCAGTTC
ACCGTGTGAGCTGCCGGGTGGCTGGTAACCGTCGGGTTGCGTTGGCGTGG
AATCGGTGGGGTTTTTCTGGATGAAAAGTCATTCTGCCACCAAGCCACTG
TCCCAAAGCACTGCTGTCCCACGGATACAGACTACTTCGTTGCCTTCGTT
TGAAAATCTCTCAACCCTGAAAACAGCAAGAAGTGCCTTGACCGTGCTAT
TGGATGCGTGCTTTTTCCCTCTCGTCTCTTGTGCGTGGGGCGCCAGCGCG
TGATCGAGCTCGGCGGAGGCACGGGAGCCCTGTCCGTGGGCCTAGCGCGG
TCTGGGGCTGCGTCGGTTACTTGCACGGACCTCCCGTGCCATCTAGTACG
CATACGATCGACGGTGCTCGCCAACGCTCGAACGAGCACCAGCTGTCGCC
GAGGTGTTCCAGCCAGTGACGTTGATGTTGGTGGAGACTGTGGCGGCGTT
GTAGCGGGAACAGTGAACCGTGGGAGCGACCTGCCAGCGGCGACAGGAGT
ACCGACAGCAGCCACGCGAGAGGCTAGAGTTTGCGTGGTAGCCCTGCGGT
GGGGTGAAGCGGAAGACATCGCGAACGCACGGGCATCACCGTGCAACAAC
CATAGCGGTGAAGGCAGAAGATGTAGCAGCAGCAGTGGCGGTGGCGGCGC
AAGCGATGACGAGTCTTGGGCGTTCGACGTGATCGTGCTCAGCGAGGTGC
TGTACTGGCCCGCGCTGGACCTGCTGCAGGAGGACACGAGAGAGCCTTTG
CGGCGCACTCTGGTGGGACTCTCCAAGCCCGGGACAAAGGTCATCCTGAT
CTACAAGGAGAGGTGAAAATAACACAAAATAACACGTGCGAAAAAGGTGA
TGGTTCGCCCAAACCAGGGTTAGGATGATCGAGCTGGACGGGGTTCATGG
TTTTGGCTTGGAGGATAAGAGCGAGTAGAGCCGAACAGATGAAACAGCCA
ATTGTTCGTGTTCCTGGCGGTGGTGGTATTGACGATGCCCACGCCCATGA
TGTCATGGCCGAATATGTACCAGCGGTTGAATTGCACATTTCTCTGTGAA
TCCCACTTGGCCTGCCCGACCTCGCACCAACTCGCGAAATTTAGAGGCAC
TAAGACTGCCAGATGACCCACGAAGCGTTCCCGGAAAACCGGACGGCTCG
ACACGATTTCCAGCCCGCACATTCTTGGGATACCACGGTCATCTGCCAGG
GGTCGGTTTACGCACGTGGATTTTTTCATGTACATGTATAGTTTGTATGC
ACTCGTTCGGGTACCGAGGGTGGCATACGGTACCACACCCTCTGGATCGA
TTTCCGCAGCTCCACTGCCTTGGGGGCAGTTGACTTTTGACCACGGAAGG
CGTCCGCGTCAGTTAGACCTGTACGGATATCAGGAGGTACTGAGAGGAGA
CGGAACGGTTCTTACTGTGAAGACAACAACAACTACTACTACTACTCGAC
GACCAAGAGGATATATGACTCAAACAATACGTAGTCGAAAATCCCTCAAC
GATACAGCTGCAACGCCAATTTGATCGACACCGCCGCCACTGTTTCTGCT
CTGAGAAGTCGAGCTTTGAAAATCAGTCCAGGGGGGTTGGTATCCTGTGT
AACTTACGGCATGCTGCTGTTGTCAAATGGGCACCAAGAGGAATCACTGG
ACGGAGTGTAAAACCGCGTTCATGAAAACTTTTTTCGCAGGTGGCCAGAG
CGAGAGGCGGAGTTTCTAAGGTCGTGCGAGGCGTCTTTTGAAGTGGGGGA
CATCCCGGCGGACCTTTTGGCTATGCCGACGGCCTCCACAGAGGACCCTG
GTTCCGCGGCGATCAGGGCGGTGGTTATGGTTCGCCTGCCGCTACAGAGA
GATGAGCAATGA
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Coding sequence (CDS) from alignment at Scaffold_246:825769..828780-

>EsuBft1065_15a-0001 ID=EsuBft1065_15a-0001|Name=EsuBft1065_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1023bp|location=Sequence derived from alignment at Scaffold_246:825769..828780- (Ectocarpus subulatus male Bft15b)
ATGCCAGTGGTGCTGTCGTCTCGCTGGGGGATAGAACCGGTGGCTGTTGG
CACCGCCTGCACCGACGATGGTCCTTTGCCGCTTCCCTTCGAAACGTCCG
CAACAACGGCAGCAGGAGAGGTGGGGACACGGCAAGATTATTGCTGTGAT
GACCGTGGTATTGGTGAGGACGGAGATGAAGAAGACATGGAGCTCACGGG
CAGAACGCTGTGGGACTGTACCCAAGTGCTGTGGGATTTAGTCGCAGACC
CCCGCAAGGACAACATGTTCACGGTCAGAGACAAGCGCGTGATCGAGCTC
GGCGGAGGCACGGGAGCCCTGTCCGTGGGCCTAGCGCGGTCTGGGGCTGC
GTCGGTTACTTGCACGGACCTCCCGTGCCATCTAGTACGCATACGATCGA
CGGTGCTCGCCAACGCTCGAACGAGCACCAGCTGTCGCCGAGGTGTTCCA
GCCAGTGACGTTGATGTTGGTGGAGACTGTGGCGGCGTTGTAGCGGGAAC
AGTGAACCGTGGGAGCGACCTGCCAGCGGCGACAGGAGTACCGACAGCAG
CCACGCGAGAGGCTAGAGTTTGCGTGGTAGCCCTGCGGTGGGGTGAAGCG
GAAGACATCGCGAACGCACGGGCATCACCGTGCAACAACCATAGCGGTGA
AGGCAGAAGATGTAGCAGCAGCAGTGGCGGTGGCGGCGCAAGCGATGACG
AGTCTTGGGCGTTCGACGTGATCGTGCTCAGCGAGGTGCTGTACTGGCCC
GCGCTGGACCTGCTGCAGGAGGACACGAGAGAGCCTTTGCGGCGCACTCT
GGTGGGACTCTCCAAGCCCGGGACAAAGGTCATCCTGATCTACAAGGAGA
GGTGGCCAGAGCGAGAGGCGGAGTTTCTAAGGTCGTGCGAGGCGTCTTTT
GAAGTGGGGGACATCCCGGCGGACCTTTTGGCTATGCCGACGGCCTCCAC
AGAGGACCCTGGTTCCGCGGCGATCAGGGCGGTGGTTATGGTTCGCCTGC
CGCTACAGAGAGATGAGCAATGA
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