EsuBft1065_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1065_14a-0001
Unique NameEsuBft1065_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:831116..833929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1065_14
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length146
Hectar predicted targeting categoryother localisation
Evalue1.64e-93
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_14aEsuBft1065_14aEctocarpus subulatus male Bft15bgeneScaffold_246 831116..833929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_14a-0001EsuBft1065_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 831116..833701 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_14a-0001-exonEsuBft1065_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 831116..831586 +
EsuBft1065_14a-0001-exonagat-exon-19226Ectocarpus subulatus male Bft15bexonScaffold_246 832400..832633 +
EsuBft1065_14a-0001-exonagat-exon-19227Ectocarpus subulatus male Bft15bexonScaffold_246 832720..832932 +
EsuBft1065_14a-0001-exonagat-exon-19225Ectocarpus subulatus male Bft15bexonScaffold_246 833384..833929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_14a-0001-cdsEsuBft1065_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 831116..831586 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_14a-0001-exonagat-three_prime_utr-632Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 833702..833929 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1065_14a-0001 ID=EsuBft1065_14a-0001|Name=EsuBft1065_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1464bp|location=Sequence derived from alignment at Scaffold_246:831116..833929+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAGTGGCTGCCATCGCTGGAACTCCTCGCTGGCGGCGGGAGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGACTCTCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTGCTGTG
GTCTTGGTCGCCCTTGATGAGGTCCAACGCAACGACTTGTCGCAAGAAGA
GGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCCAAACTCTCAAGAGGAC
AGCGAAAGAGGAAAGACGTGGAGAAATGCGCTTGGGCAAAGATGTTGGAG
GATAAGGACCTCGAGGACAGCAACAGCATAACCTCCAAGCAGTTTCGCCT
TGACTTTCGCGTCCCCTACAGCTTCTTTCTGCGGCTCGGGGCGTTGGTGA
AGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCAGCAGGTCGGCAA
AGCCACCAAGTGGAGCACAAGGTACTGGCCTGGCTGACCATACTCGGCAG
GGGCAACTGCTTTGCAAGCATCTACCAGATGTCTTGGATGAGCGGGAAGA
CCGTGCAGACGATGTTCCACAAGTTCCGCAAGCACTTCGCACGGGAAATG
TACGATGAACACATCTACCTCCCGTCGGAACAGAACGGCGAGCTGGACCA
CGTCATGGAGCAGTGTGACCGGCTTGGGTTTTTGGGCGCGATGAGCTCCA
TGGGCGTCACGGTTAATCACGCTGGCCGTGCAATTGTCGTGACCGAGGGC
TTCACTGGCTCGACGAACGACAAGACCATCATCTGCTGGGATGCCGCGGT
CGAGAAGATTCGGACGGACAAGCAGTACCCGAAGCAGACCTTCGACGTGT
ACAACGAGGATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTC
GACAACGGGTACCACAAGGATCCTGAGCTCGCCATGGCGTACCACGAGCA
GGAGCGCATCGACAACGTGTTCTTAACGTGCTGCATCTTGCATAACACGC
TGCACACCTTCGACAGAATGGACCAGCTGGTGGAGAACACGCTCTGGGCC
AGCAGTGCCGGGGCGGGGACTGGGGTGGCGACCGAGCAGGAGGCGGACTC
TAGCTCTATTGGGGCTAAGGACACCAACGACAAAGAGCAAGTAGAGAAAG
GGCACGGGGAGCGCAAGAGGAAGCTTACTACGAGCTTCGCGTACCGCATG
AAGCACAAGAAGGACATTGTCTGGCTTTCTAGGTGATCGACTCCGGTGTA
CTGTAGAGCTTTGCATAGTGTCAATGTTGCGCCCCACCTTGTCTTACACA
AACCGCTGCAGCACCGTGTGACTTGTGTGGTGCTCGGGTGAACATTTTCT
GGTAGCGTGTGTGACTTTTTTTTGGGTACATGGTACGGCAGCAATGGATT
TTATTTTCATTCCCACTCCACCCCCCCTTCCCCGTTCCCTGTACCCACCA
CGTGTGTTTTGGTT
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protein sequence of EsuBft1065_14a-0001

>EsuBft1065_14 ID=EsuBft1065_14|Name=EsuBft1065_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=411bp
MWEWLPSLELLAGGGSATRLTPPYISSLDSLPMAETGVGDALLPATALAV
VLVALDEVQRNDLSQEEEEDRAPDLPRPKLSRGQRKRKDVEKCAWAKMLE
DKDLEDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQ
SHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFAREM
YDEHIYLPSEQNGELDHVMEQCDRLGFLGAMSSMGVTVNHAGRAIVVTEG
FTGSTNDKTIICWDAAVEKIRTDKQYPKQTFDVYNEDGTTTTLKGCYLLV
DNGYHKDPELAMAYHEQERIDNVFLTCCILHNTLHTFDRMDQLVENTLWA
SSAGAGTGVATEQEADSSSIGAKDTNDKEQVEKGHGERKRKLTTSFAYRM
KHKKDIVWLSR
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mRNA from alignment at Scaffold_246:831116..833929+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1065_14a-0001 ID=EsuBft1065_14a-0001|Name=EsuBft1065_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2814bp|location=Sequence derived from alignment at Scaffold_246:831116..833929+ (Ectocarpus subulatus male Bft15b)
ATGTGGGAGTGGCTGCCATCGCTGGAACTCCTCGCTGGCGGCGGGAGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGACTCTCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTGCTGTG
GTCTTGGTCGCCCTTGATGAGGTCCAACGCAACGACTTGTCGCAAGAAGA
GGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCCAAACTCTCAAGAGGAC
AGCGAAAGAGGAAAGACGTGGAGAAATGCGCTTGGGCAAAGATGTTGGAG
GATAAGGACCTCGAGGACAGCAACAGCATAACCTCCAAGCAGTTTCGCCT
TGACTTTCGCGTCCCCTACAGCTTCTTTCTGCGGCTCGGGGCGTTGGTGA
AGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCAGCAGGTCGGCAA
AGCCACCAAGTGGAGCACAAGGTAGGCTGACGGCATATTGGGTTCGTACG
AGTGCAGACTCTGGCCTATAACCAAGAAGGGGAGCTGCTGTGGTGTAGAG
TTGAACATATGTAGCGGAGGGACAACTGCTGTAGACAACATTTTTCTATT
CCTCCTGTTGCCAGCTGCATGCCGTCTCTGGGGCATGCCCGACACGACTC
GCTTGGTGACCGCTGGCCGTGTTTGCACAGTCGGGCTCGCNCACAGTCGG
GCTCAAACATGTTACTCAAATCGTACAGCAGTACAGATGCTCTGTCCACA
AGCAACAAGGAGGGGACTGCTGCTGCTGCTGTTGTGTAGGGTGCATTAGG
CGGAGGAACCAGGCGCATATTGTATTTGTGCATGCAGCTGCATGCCGTCT
CCTGGGCATATGACGAGACACGGTTGGTGACCACCGGCCGTGCGCTCCAA
CCCTCGAAAAAAGTGCACCCGGCCGCTCTGCTGTCGTGCACAACAGCATA
TGTTCACCGGACAGTGTTTCGTCGGTGTTGTCTGTAGGTAGAGCATGTAC
TTTTGGTTCAACTGCTGCTATGTACAACTGCAGCACCACCGTTGTGACGT
CACATCGGGTTGAACTGGCGTCCGAGATAACGCAGGAGAAGAGCGCTGCA
GTCGGCGCGACTTCGCAAAGCTAAACTGGCAGTCGTTCTGTTGGCTAGCG
TACGCCGCAATGCTCAGTCCTCCCGCCCGTGAGATGCTTCCACACGACGT
ACGGTACACGCAACCACATCACATCACTAATAATGACACCGCGATATCCC
GTGTGTACATTCCTTGTTGCACTTGCTGGTGCAGGTACTGGCCTGGCTGA
CCATACTCGGCAGGGGCAACTGCTTTGCAAGCATCTACCAGATGTCTTGG
ATGAGCGGGAAGACCGTGCAGACGATGTTCCACAAGTTCCGCAAGCACTT
CGCACGGGAAATGTACGATGAACACATCTACCTCCCGTCGGAACAGAACG
GCGAGCTGGACCACGTCATGGAGCAGTGTGACCGGCTTGGGTTTTTGGGC
GCGATGAGCTCCATGGGCGTAACTCACATCGGTTGGAGTATGTTCCCCTA
CAACCTAGCCCGTCCCTACACAGGCAAAGAGGGGTTCCTACGATCGGGTA
CCAGGTCACGGTTAATCACGCTGGCCGTGCAATTGTCGTGACCGAGGGCT
TCACTGGCTCGACGAACGACAAGACCATCATCTGCTGGGATGCCGCGGTC
GAGAAGATTCGGACGGACAAGCAGTACCCGAAGCAGACCTTCGACGTGTA
CAACGAGGATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCG
ACAACGGGTACCACAAGGTGGATGGAAATGACATGTTGTGATTTTGGGTG
ACCGACGGTAGTGTTTTTGAAGAGGTGTGTGTCCGGCCTGGCAGAAAGAG
AGAGAGAGAGAGCTGCCCAGTGAGGTATTTGTTGGCTCGGGAAATCAGAA
CCTCGGTTGCCCGCTCTTGAAGTTGACATGAGGTATGTCATGGCTTTAGG
TTATTTGATTGGTATTTCCATTGCACGCCCCTTCGACCTCGAAGACCCTG
CCCCCCCCCCCTATTTCGCAGCTTGTCAACAGCGTCGAATCGAAACGTCC
CTCCCTCGGCCCTTCTCCATTCCCCTTGTCGTTTTTTTTTCAGTGGGAAA
TCCTGGTGGAACCCACCAAGGACCCGCTGAGCGAGAACGACATCCCCTTT
TCGAAGAGGCTGGAGAGCGTGCGCAAGGACGTGGAGTGCTTCTTCAGCAT
CCTGAAGGGTCGCTTCAGGATCCTGAGCTCGCCATGGCGTACCACGAGCA
GGAGCGCATCGACAACGTGTTCTTAACGTGCTGCATCTTGCATAACACGC
TGCACACCTTCGACAGAATGGACCAGCTGGTGGAGAACACGCTCTGGGCC
AGCAGTGCCGGGGCGGGGACTGGGGTGGCGACCGAGCAGGAGGCGGACTC
TAGCTCTATTGGGGCTAAGGACACCAACGACAAAGAGCAAGTAGAGAAAG
GGCACGGGGAGCGCAAGAGGAAGCTTACTACGAGCTTCGCGTACCGCATG
AAGCACAAGAAGGACATTGTCTGGCTTTCTAGGTGATCGACTCCGGTGTA
CTGTAGAGCTTTGCATAGTGTCAATGTTGCGCCCCACCTTGTCTTACACA
AACCGCTGCAGCACCGTGTGACTTGTGTGGTGCTCGGGTGAACATTTTCT
GGTAGCGTGTGTGACTTTTTTTTGGGTACATGGTACGGCAGCAATGGATT
TTATTTTCATTCCCACTCCACCCCCCCTTCCCCGTTCCCTGTACCCACCA
CGTGTGTTTTGGTT
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Coding sequence (CDS) from alignment at Scaffold_246:831116..833929+

>EsuBft1065_14a-0001 ID=EsuBft1065_14a-0001|Name=EsuBft1065_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1236bp|location=Sequence derived from alignment at Scaffold_246:831116..833929+ (Ectocarpus subulatus male Bft15b)
ATGTGGGAGTGGCTGCCATCGCTGGAACTCCTCGCTGGCGGCGGGAGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGACTCTCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTGCTGTG
GTCTTGGTCGCCCTTGATGAGGTCCAACGCAACGACTTGTCGCAAGAAGA
GGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCCAAACTCTCAAGAGGAC
AGCGAAAGAGGAAAGACGTGGAGAAATGCGCTTGGGCAAAGATGTTGGAG
GATAAGGACCTCGAGGACAGCAACAGCATAACCTCCAAGCAGTTTCGCCT
TGACTTTCGCGTCCCCTACAGCTTCTTTCTGCGGCTCGGGGCGTTGGTGA
AGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCAGCAGGTCGGCAA
AGCCACCAAGTGGAGCACAAGGTACTGGCCTGGCTGACCATACTCGGCAG
GGGCAACTGCTTTGCAAGCATCTACCAGATGTCTTGGATGAGCGGGAAGA
CCGTGCAGACGATGTTCCACAAGTTCCGCAAGCACTTCGCACGGGAAATG
TACGATGAACACATCTACCTCCCGTCGGAACAGAACGGCGAGCTGGACCA
CGTCATGGAGCAGTGTGACCGGCTTGGGTTTTTGGGCGCGATGAGCTCCA
TGGGCGTCACGGTTAATCACGCTGGCCGTGCAATTGTCGTGACCGAGGGC
TTCACTGGCTCGACGAACGACAAGACCATCATCTGCTGGGATGCCGCGGT
CGAGAAGATTCGGACGGACAAGCAGTACCCGAAGCAGACCTTCGACGTGT
ACAACGAGGATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTC
GACAACGGGTACCACAAGGATCCTGAGCTCGCCATGGCGTACCACGAGCA
GGAGCGCATCGACAACGTGTTCTTAACGTGCTGCATCTTGCATAACACGC
TGCACACCTTCGACAGAATGGACCAGCTGGTGGAGAACACGCTCTGGGCC
AGCAGTGCCGGGGCGGGGACTGGGGTGGCGACCGAGCAGGAGGCGGACTC
TAGCTCTATTGGGGCTAAGGACACCAACGACAAAGAGCAAGTAGAGAAAG
GGCACGGGGAGCGCAAGAGGAAGCTTACTACGAGCTTCGCGTACCGCATG
AAGCACAAGAAGGACATTGTCTGGCTTTCTAGGTGA
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