EsuBft1065_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1065_10a-0001
Unique NameEsuBft1065_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:874923..876208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1065_10
Protein domainsPTHR32134
Protein domainsSSF52058
Protein domainsG3DSA
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon2
Length1233
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_10aEsuBft1065_10aEctocarpus subulatus male Bft15bgeneScaffold_246 874923..876208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_10a-0001-exonagat-exon-19213Ectocarpus subulatus male Bft15bexonScaffold_246 874923..876137 -
EsuBft1065_10a-0001-exonEsuBft1065_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 876191..876208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_10a-0001-cdsEsuBft1065_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 874923..876137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1065_10a-0001EsuBft1065_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 874923..876208 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1065_10a-0001 ID=EsuBft1065_10a-0001|Name=EsuBft1065_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1233bp|location=Sequence derived from alignment at Scaffold_246:874923..876208- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCACTGCTGTGGGCTATCGTTCGGGTACAACTTCAATCAACCTAT
TGCTGGAGCCGCGTGGCCGTCTTTCCTGCAGCAGCAATCGTGGGGGCACA
GGTTCAATCAGCCCATTGCCGGAGTCGAATTGTCGGCGTCCTTGCAACAG
CTATCGTTCGGGAACCGCTACAATCAACCTATTGCCGGAGTCGTGTGGCC
GTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTTCAATCAGCGCATTG
CCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTATCGTTCAGGGCAAGT
TTCAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCT
ATCGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGT
CCTTCCTGCTGCAAGTATCGTTCGGGTTATGTTTCGATCAGCCTATCGCC
GGAATCGTGTGGCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTT
CAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTAT
CGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGTCC
TTCCTGCTGCAAGTATCGTTCGGGTTATGTTTCGATCAGCCTATCGCCGG
AATCGTGTGGCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTTCA
ATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTATCG
TTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGTCCTC
TCTGCAGCAGCTATCGTTCGGGCCAACTTTCGATCAGCCTGTTGCCGGAG
TCGTATGGCCGTCATCCCTGCAGCAGCTATCGTTCGGGTACTTCTTCAAT
CAGCCTATTGATGGAGTCGCGTGGCCCTCCTCCGTACAACAGCTAGTGTT
CGGGTACGACTTCATTCAGCCTATCGCCGGAGTCGCGTGGCCGTCCTCTC
TGCAGCAGCTATCGTTCTGGTGGAACTTCAGTCAGCCTTTTGCCGACGTC
GTGTGGCCGTCCTCTCTGCAGCAGCTATCGTTCTGGTGGAACTTCAATCA
GCCTATTGCCAACGTCGTGTGGCCGTCCTCGCTGCAGCAGCTATCGTTCG
GGTCAAATTTCATTCAGCCTACCACCGGAGTCACGTGGCCGTCCTCCCTG
CAAAAACTATCGTTCGGATTCAGATTCAAGTAG
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protein sequence of EsuBft1065_10a-0001

>EsuBft1065_10 ID=EsuBft1065_10|Name=EsuBft1065_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=410bp
MWHCCGLSFGYNFNQPIAGAAWPSFLQQQSWGHRFNQPIAGVELSASLQQ
LSFGNRYNQPIAGVVWPSSLQQLSFRASFNQRIAGIVLPAPLQQLSFRAS
FNQRIAGIVLPAPLQQLSFGDQYNQPIAGVVWPSFLLQVSFGLCFDQPIA
GIVWPSSLQQLSFRASFNQRIAGIVLPAPLQQLSFGDQYNQPIAGVVWPS
FLLQVSFGLCFDQPIAGIVWPSSLQQLSFRASFNQRIAGIVLPAPLQQLS
FGDQYNQPIAGVVWPSSLQQLSFGPTFDQPVAGVVWPSSLQQLSFGYFFN
QPIDGVAWPSSVQQLVFGYDFIQPIAGVAWPSSLQQLSFWWNFSQPFADV
VWPSSLQQLSFWWNFNQPIANVVWPSSLQQLSFGSNFIQPTTGVTWPSSL
QKLSFGFRFK
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mRNA from alignment at Scaffold_246:874923..876208-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1065_10a-0001 ID=EsuBft1065_10a-0001|Name=EsuBft1065_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1286bp|location=Sequence derived from alignment at Scaffold_246:874923..876208- (Ectocarpus subulatus male Bft15b)
ATGTGGCACTGCTGTGGGGTACTTTGAATCAGCCCATCGCCGAAGTCGCA
TTACCGGCGTCCCTGCAACAGCTATCGTTCGGGTACAACTTCAATCAACC
TATTGCTGGAGCCGCGTGGCCGTCTTTCCTGCAGCAGCAATCGTGGGGGC
ACAGGTTCAATCAGCCCATTGCCGGAGTCGAATTGTCGGCGTCCTTGCAA
CAGCTATCGTTCGGGAACCGCTACAATCAACCTATTGCCGGAGTCGTGTG
GCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTTCAATCAGCGCA
TTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTATCGTTCAGGGCA
AGTTTCAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACA
GCTATCGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGC
CGTCCTTCCTGCTGCAAGTATCGTTCGGGTTATGTTTCGATCAGCCTATC
GCCGGAATCGTGTGGCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAG
TTTCAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGC
TATCGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCG
TCCTTCCTGCTGCAAGTATCGTTCGGGTTATGTTTCGATCAGCCTATCGC
CGGAATCGTGTGGCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTT
TCAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTA
TCGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGTC
CTCTCTGCAGCAGCTATCGTTCGGGCCAACTTTCGATCAGCCTGTTGCCG
GAGTCGTATGGCCGTCATCCCTGCAGCAGCTATCGTTCGGGTACTTCTTC
AATCAGCCTATTGATGGAGTCGCGTGGCCCTCCTCCGTACAACAGCTAGT
GTTCGGGTACGACTTCATTCAGCCTATCGCCGGAGTCGCGTGGCCGTCCT
CTCTGCAGCAGCTATCGTTCTGGTGGAACTTCAGTCAGCCTTTTGCCGAC
GTCGTGTGGCCGTCCTCTCTGCAGCAGCTATCGTTCTGGTGGAACTTCAA
TCAGCCTATTGCCAACGTCGTGTGGCCGTCCTCGCTGCAGCAGCTATCGT
TCGGGTCAAATTTCATTCAGCCTACCACCGGAGTCACGTGGCCGTCCTCC
CTGCAAAAACTATCGTTCGGATTCAGATTCAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_246:874923..876208-

>EsuBft1065_10a-0001 ID=EsuBft1065_10a-0001|Name=EsuBft1065_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1233bp|location=Sequence derived from alignment at Scaffold_246:874923..876208- (Ectocarpus subulatus male Bft15b)
ATGTGGCACTGCTGTGGGCTATCGTTCGGGTACAACTTCAATCAACCTAT
TGCTGGAGCCGCGTGGCCGTCTTTCCTGCAGCAGCAATCGTGGGGGCACA
GGTTCAATCAGCCCATTGCCGGAGTCGAATTGTCGGCGTCCTTGCAACAG
CTATCGTTCGGGAACCGCTACAATCAACCTATTGCCGGAGTCGTGTGGCC
GTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTTCAATCAGCGCATTG
CCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTATCGTTCAGGGCAAGT
TTCAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCT
ATCGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGT
CCTTCCTGCTGCAAGTATCGTTCGGGTTATGTTTCGATCAGCCTATCGCC
GGAATCGTGTGGCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTT
CAATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTAT
CGTTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGTCC
TTCCTGCTGCAAGTATCGTTCGGGTTATGTTTCGATCAGCCTATCGCCGG
AATCGTGTGGCCGTCCTCCCTGCAACAGCTATCGTTCAGGGCAAGTTTCA
ATCAGCGCATTGCCGGGATCGTATTGCCGGCGCCCCTGCAACAGCTATCG
TTCGGGGACCAATACAATCAACCTATTGCCGGAGTCGTGTGGCCGTCCTC
TCTGCAGCAGCTATCGTTCGGGCCAACTTTCGATCAGCCTGTTGCCGGAG
TCGTATGGCCGTCATCCCTGCAGCAGCTATCGTTCGGGTACTTCTTCAAT
CAGCCTATTGATGGAGTCGCGTGGCCCTCCTCCGTACAACAGCTAGTGTT
CGGGTACGACTTCATTCAGCCTATCGCCGGAGTCGCGTGGCCGTCCTCTC
TGCAGCAGCTATCGTTCTGGTGGAACTTCAGTCAGCCTTTTGCCGACGTC
GTGTGGCCGTCCTCTCTGCAGCAGCTATCGTTCTGGTGGAACTTCAATCA
GCCTATTGCCAACGTCGTGTGGCCGTCCTCGCTGCAGCAGCTATCGTTCG
GGTCAAATTTCATTCAGCCTACCACCGGAGTCACGTGGCCGTCCTCCCTG
CAAAAACTATCGTTCGGATTCAGATTCAAGTAG
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