EsuBft1064_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1064_9a-0001
Unique NameEsuBft1064_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:40315..40988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1064_9
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length624
Evalue4.37e-33
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_9aEsuBft1064_9aEctocarpus subulatus male Bft15bgeneScaffold_339 40315..40988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_9a-0001-exonEsuBft1064_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 40315..40524 -
EsuBft1064_9a-0001-exonagat-exon-78590Ectocarpus subulatus male Bft15bexonScaffold_339 40575..40988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_9a-0001-cdsEsuBft1064_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 40315..40524 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_9a-0001-exonagat-five_prime_utr-393Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 40812..40988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_9a-0001EsuBft1064_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 40315..40811 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1064_9a-0001 ID=EsuBft1064_9a-0001|Name=EsuBft1064_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=624bp|location=Sequence derived from alignment at Scaffold_339:40315..40988- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCCTTTGGGACCCCACGTTTATTCGCCAACGGTAGGCACGGTGGTTCCA
CAAGCTTCTCAACACCAAGTCGCTGACCATCGACCTGCATGCGGCTGAAA
AGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTA
GTTGAGGTTGAGGAAGCGGTGCGGGAAATGACCAACAGAAAGGCCGTCGG
GCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTCGACGGAGATC
AACATCTCCTCCGCGAATTCCACGCCATTGTCGTGGACGTGTGGCAGACT
GGGGAAGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGCTGTTCAA
GAATGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCC
CACACGCCGGCAAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCA
CACCGGTCGACGCTCGACATACTGTTCGCCATCCAGCGGCTCCATGAGCT
CGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCA
AGGCATACGATTCGGTAGACCGAGACCTATTGTGGGACGTGCTCCGACGC
TTCGGCGTGCCCCCGAAGATNNNN
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protein sequence of EsuBft1064_9a-0001

>EsuBft1064_9 ID=EsuBft1064_9|Name=EsuBft1064_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=149bp
MTNRKAVGPDDLPAELIKLFLDGDQHLLREFHAIVVDVWQTGEVPQQWKD
ATIKVLFKNGDTMECGNYRGISLVPHAGKGILPEEQSGFRPHRSTLDILF
AIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKXX
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mRNA from alignment at Scaffold_339:40315..40988-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1064_9a-0001 ID=EsuBft1064_9a-0001|Name=EsuBft1064_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=674bp|location=Sequence derived from alignment at Scaffold_339:40315..40988- (Ectocarpus subulatus male Bft15b)
GTCCTTTGGGACCCCACGTTTATTCGCCAACGGTAGGCACGGTGGTTCCA
CAAGCTTCTCAACACCAAGTCGCTGACCATCGACCTGCATGCGGCTGAAA
AGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTA
GTTGAGGTTGAGGAAGCGGTGCGGGAAATGACCAACAGAAAGGCCGTCGG
GCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTCGACGGAGATC
AACATCTCCTCCGCGAATTCCACGCCATTGTCGTGGACGTGTGGCAGACT
GGGGAAGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGCTGTTCAA
GAATGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCC
CACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCAC
TACTGCGAGCGAAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCA
CACCGGTCGACGCTCGACATACTGTTCGCCATCCAGCGGCTCCATGAGCT
CGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCA
AGGCATACGATTCGGTAGACCGAGACCTATTGTGGGACGTGCTCCGACGC
TTCGGCGTGCCCCCGAAGATNNNN
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Coding sequence (CDS) from alignment at Scaffold_339:40315..40988-

>EsuBft1064_9a-0001 ID=EsuBft1064_9a-0001|Name=EsuBft1064_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_339:40315..40988- (Ectocarpus subulatus male Bft15b)
ATGACCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTCGACGGAGATCAACATCTCCTCCGCGAATTCCACGCCA
TTGTCGTGGACGTGTGGCAGACTGGGGAAGTACCACAGCAGTGGAAGGAT
GCCACCATCAAAGTGCTGTTCAAGAATGGGGACACGATGGAGTGCGGCAA
CTACCGGGGCATCTCTCTCGTCCCACACGCCGGCAAGGGCATCCTCCCGG
AGGAGCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATACTGTTC
GCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTT
CGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTAGACCGAGACC
TATTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATNNNN
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