EsuBft1064_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1064_8a-0001
Unique NameEsuBft1064_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:51692..52958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3U9
ProteomeIdEsuBft1064_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length73
Hectar predicted targeting categoryother localisation
Evalue2.15e-67
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K15255,ko:K20647
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_8aEsuBft1064_8aEctocarpus subulatus male Bft15bgeneScaffold_339 51692..52958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_8a-0001-exonagat-exon-78588Ectocarpus subulatus male Bft15bexonScaffold_339 51692..51990 -
EsuBft1064_8a-0001-exonEsuBft1064_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 52083..52203 -
EsuBft1064_8a-0001-exonagat-exon-78587Ectocarpus subulatus male Bft15bexonScaffold_339 52247..52552 -
EsuBft1064_8a-0001-exonagat-exon-78589Ectocarpus subulatus male Bft15bexonScaffold_339 52953..52958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_8a-0001-cdsEsuBft1064_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 51692..51990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_8a-0001EsuBft1064_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 51692..52958 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1064_8a-0001 ID=EsuBft1064_8a-0001|Name=EsuBft1064_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=732bp|location=Sequence derived from alignment at Scaffold_339:51692..52958- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTGAAAAAAAAAATCTTGGGGGGGGGACCCCGTAGGACCCCAGC
AAACTGCGCCAAGTGGTCACCTGCGCTACGGGACGAGGTCAACGCCATCG
ACAATGCCTCCGCCGACGATCTACCAACAGTCGCATGTCTTGCGGTCGGT
GCGGCTGTAGTTATCCACAAGAGCCCCCAATTCGTCTTGCTGGGTGTGTG
CAACAACTCCGACGGCGTCATCGACAGCATAGAGCTCGACCAGCGTGAAG
AGTATCACGTGCATAGCAACCCGGGGCACTCTGTTGTATACCTGCGTTAC
ACCCCCGTCAGGCTCGACGGTTTGCCGCGCGGGGTCGTCGCCTTTGCTCC
GGTGGAGAAACCCTTCTCGGTCGTCGGCGTCGGCAAGAGAAAGTTTACCA
TCCAACGGCGACAACTGCTGCCTACCGCCGGATCCGTTTACGTAGCTCTA
TCCCGAGTCGCGTGTCTTGAAGACCTGTACCTCCTGTTCCCGGCAACGTT
GGAGGACCCCAACAAACCACGAAACAAGGATGTCGTCGCCCTCACCGACT
ATCTCCAGCGGCTCGAAAAAGCGACCCTTGCAGATTTCCTCCAAGACCCC
ACACGCTTCACGCCGGCCTCAGCCTCACTGGCTCATCTTCCCGACGTAGG
ACCACGGCCGATGGCCAAGCAACAGCAGGTGAAAGGGGCTAACCGCCATG
GACATGGAGCCACTCGCAGGACGGCATATTAA
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protein sequence of EsuBft1064_8a-0001

>EsuBft1064_8 ID=EsuBft1064_8|Name=EsuBft1064_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=243bp
MRVKKKILGGGPRRTPANCAKWSPALRDEVNAIDNASADDLPTVACLAVG
AAVVIHKSPQFVLLGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYLRY
TPVRLDGLPRGVVAFAPVEKPFSVVGVGKRKFTIQRRQLLPTAGSVYVAL
SRVACLEDLYLLFPATLEDPNKPRNKDVVALTDYLQRLEKATLADFLQDP
TRFTPASASLAHLPDVGPRPMAKQQQVKGANRHGHGATRRTAY
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mRNA from alignment at Scaffold_339:51692..52958-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1064_8a-0001 ID=EsuBft1064_8a-0001|Name=EsuBft1064_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1267bp|location=Sequence derived from alignment at Scaffold_339:51692..52958- (Ectocarpus subulatus male Bft15b)
ATGCGTGTACGTTTGGGTTGCTTCTATCTGCCTCAATCGGAAAGCATGAT
ACACACTACCTGAACCTCAGTATCCTCGCGAACGCGTAGTACTATGGAGA
GGCTCACTTCTCGCCCAGGAAGAGCGTGCCGGGCCCGAACTCCGTTTCCT
TGCATTGGAGACAAGTCTTGCGAGCCGCGTCGTCTGCAGTAAACTTCGGC
AGTTGGCGGGGCTGGTTCTCGTGCTCGTCGACGATCGCTCCCCACGCCTT
GGATGTTTCGGAAGGCATGCAGGTGGTGTGTGAGCTTCTGCTGTAGGAGG
GGTAGGGAGAGGGAGGGGTGTTGACAGGATGTGCGAAAGGAGGGGGGGGG
CTTGCCTTGTGGGGGCCGCCACCTGTGCAAATAGGATTTGTATCCGTCCA
ATACAGGTGAAAAAAAAAATCTTGGGGGGGGGACCCCGTAGGACCCCAGC
AAACTGCGCCAAGTGGTCACCTGCGCTACGGGACGAGGTCAACGCCATCG
ACAATGCCTCCGCCGACGATCTACCAACAGTCGCATGTCTTGCGGTCGGT
GCGGCTGTAGTTATCCACAAGAGCCCCCAATTCGTCTTGCTGGGTGTGTG
CAACAACTCCGACGGCGTCATCGACAGCATAGAGCTCGACCAGCGTGAAG
AGTATCACGTGCATAGCAACCCGGGGCACTCTGTTGTATACCTGCGTTAC
ACCCCCGTCAGGGTGCTTGTCTACATCAAGGCTGCGTAATGAGACTGGCC
TGCAGCTCGACGGTTTGCCGCGCGGGGTCGTCGCCTTTGCTCCGGTGGAG
AAACCCTTCTCGGTCGTCGGCGTCGGCAAGAGAAAGTTTACCATCCAACG
GCGACAACTGCTGCCTACCGCCGGATGTTTATCATTTGTATACCGGAGCC
ACGGCGAAACCACGCGGACCATCATCCTCGACATTCGCAACCCACCAGGA
ATAGTATGGACCCCGCAGCCGTTTACGTAGCTCTATCCCGAGTCGCGTGT
CTTGAAGACCTGTACCTCCTGTTCCCGGCAACGTTGGAGGACCCCAACAA
ACCACGAAACAAGGATGTCGTCGCCCTCACCGACTATCTCCAGCGGCTCG
AAAAAGCGACCCTTGCAGATTTCCTCCAAGACCCCACACGCTTCACGCCG
GCCTCAGCCTCACTGGCTCATCTTCCCGACGTAGGACCACGGCCGATGGC
CAAGCAACAGCAGGTGAAAGGGGCTAACCGCCATGGACATGGAGCCACTC
GCAGGACGGCATATTAA
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Coding sequence (CDS) from alignment at Scaffold_339:51692..52958-

>EsuBft1064_8a-0001 ID=EsuBft1064_8a-0001|Name=EsuBft1064_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=732bp|location=Sequence derived from alignment at Scaffold_339:51692..52958- (Ectocarpus subulatus male Bft15b)
ATGCGTGTGAAAAAAAAAATCTTGGGGGGGGGACCCCGTAGGACCCCAGC
AAACTGCGCCAAGTGGTCACCTGCGCTACGGGACGAGGTCAACGCCATCG
ACAATGCCTCCGCCGACGATCTACCAACAGTCGCATGTCTTGCGGTCGGT
GCGGCTGTAGTTATCCACAAGAGCCCCCAATTCGTCTTGCTGGGTGTGTG
CAACAACTCCGACGGCGTCATCGACAGCATAGAGCTCGACCAGCGTGAAG
AGTATCACGTGCATAGCAACCCGGGGCACTCTGTTGTATACCTGCGTTAC
ACCCCCGTCAGGCTCGACGGTTTGCCGCGCGGGGTCGTCGCCTTTGCTCC
GGTGGAGAAACCCTTCTCGGTCGTCGGCGTCGGCAAGAGAAAGTTTACCA
TCCAACGGCGACAACTGCTGCCTACCGCCGGATCCGTTTACGTAGCTCTA
TCCCGAGTCGCGTGTCTTGAAGACCTGTACCTCCTGTTCCCGGCAACGTT
GGAGGACCCCAACAAACCACGAAACAAGGATGTCGTCGCCCTCACCGACT
ATCTCCAGCGGCTCGAAAAAGCGACCCTTGCAGATTTCCTCCAAGACCCC
ACACGCTTCACGCCGGCCTCAGCCTCACTGGCTCATCTTCCCGACGTAGG
ACCACGGCCGATGGCCAAGCAACAGCAGGTGAAAGGGGCTAACCGCCATG
GACATGGAGCCACTCGCAGGACGGCATATTAA
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