EsuBft1064_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1064_6a-0001
Unique Name	EsuBft1064_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_339	contig	Scaffold_339:88443..89964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1064_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	152
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_6a	EsuBft1064_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_339 88443..89964 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_6a-0001-exon	EsuBft1064_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 88443..89964 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_6a-0001-exon	agat-three_prime_utr-627	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 88443..89811 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_6a-0001-cds	EsuBft1064_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_339 89812..89964 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_6a-0001	EsuBft1064_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_339 89812..89964 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_339:88443..89964-
coding sequence from alignment at Scaffold_339:88443..89964-

spliced messenger RNA

>EsuBft1064_6a-0001 ID=EsuBft1064_6a-0001|Name=EsuBft1064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1522bp|location=Sequence derived from alignment at Scaffold_339:88443..89964- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGATCGACCGCTCCATCCGGTTGGCCGCCACGATGAGCGAGAGTAT
GGCGAACACGCCATCTAGTGATCGCGTGACTCTGTGGTGGCAACGATCGA
CCGCACTCATCCCGTTCATGAAAGAAGAGACAGCAGTAGCGAAACCCGAG
TGAAAAACGTGATAAATGAATCGGCGGCGCTCTGAATGTGGAAGCGGATA
AGAACTAGCTCACACGGGATCTAGTCCGCGCCATCCCGTTGACCAATGGA
AAGGCCTCTCACTGTTGGCAGAATGCGGGATGAGTGATCTCCGCGTTCTA
TCAGGACCCGCGCTAAATGCCGGGGGAAGGTCCCTGAATTGTAGTGATTT
TGTATGAAAGGCATATTGTAGGGTTTGTTGTGGCCAATGAATGTTTACGG
GAAGGTCCCTGGACTATAATGGTGACGTTGGTGGTGTGCCAAGCAACCTT
TACCACTCTGTGACCGAAGTTTCCTCTCCTACCATGCCCCCCCCATCTCA
AATCGCCACTGTTGCAGGTTGGCACTGTCAAGGCGGCGTGATGCTTGCGG
ATCTGCACACCCTTCACTCTCCGCTTCGCCGCTCCTGCTGTAGCTGCTGC
TGCTACTGCTGCTGCTGTGAAAAATACAACGCTGCTAGAGGTCACACGAC
AATCCCGGCGCTTCGCAAACAGGACACTTCTTATACGCTTTTATTCTCGG
AGGGCTTATTTTTTTCCGTCGTAGCTCCCTGTACGGGGGATCGTTGGCAG
TCCTGTCCGCGGAGACCCTTTCTTCTTCGCACGTCGTTGCGGCGGAACAT
TTGACGTTTCGGGATGCACGGAAAATCGGAATCGATCGTTGCTGGGTCGA
ACCCTTTCGTCGATTTTCCCGCTTGCTTTCCTTCATTGTGCGACCGCGTA
ATTGGTGAAGGTGAAACGATGTTTGCTGCTCCTTGCTCTTTTTAAGAGAA
TTTGAACACACGTCGCAGAATCGACTACAAGTATGCATACCCGTTTGAGA
AAACATTGCCTGCTAGTGGAAGGGGAGATAGGTGTGTTGAATGAAGTCGT
CGCAATGAATGGGGAGAGGAGCCTTCATCTGAGCGGGTCCTCTAGACAGA
TAATCACGATCACTTTTCTTGCCGAGACTCACAGCCGCACTCAGAACGTT
GGGTCTTAACCATGGAACAGCATCCACGATTCCCCTTATCCAAGTGAAGA
ATTATTTCGTCGATTTGGAGAGCCGAAGGCTGGGCTTGTCTTGTTTCTTG
TCGGCTCTCGCTGATCCTTTCTTGATTTCATTCCGAAGATGTCATCATCG
GTCCTACCGCTGCAGTTGGGTGTATGCTGCATCACTGATCATGATGAATC
AATGGGCCGTAGGAGGCTTCTTGGAAGTTTATGCTGTCGAAGCGGTGTTT
CTCGCGTGGTGTTGGCGGCATCATTGGTGAGGAATGGGCCTCCGAGGAAA
TTTCTTGGAAACTTCTATCGCCTTTGACCGCGAGAGGTCGAAGAATTAAC
CATTAACGTGTGTGCCCAGTGA

protein sequence of EsuBft1064_6a-0001

>EsuBft1064_6 ID=EsuBft1064_6|Name=EsuBft1064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MGIDRSIRLAATMSESMANTPSSDRVTLWWQRSTALIPFMKEETAVAKPE

mRNA from alignment at Scaffold_339:88443..89964-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1064_6a-0001 ID=EsuBft1064_6a-0001|Name=EsuBft1064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1522bp|location=Sequence derived from alignment at Scaffold_339:88443..89964- (Ectocarpus subulatus male Bft15b)
ATGGGGATCGACCGCTCCATCCGGTTGGCCGCCACGATGAGCGAGAGTAT
GGCGAACACGCCATCTAGTGATCGCGTGACTCTGTGGTGGCAACGATCGA
CCGCACTCATCCCGTTCATGAAAGAAGAGACAGCAGTAGCGAAACCCGAG
TGAAAAACGTGATAAATGAATCGGCGGCGCTCTGAATGTGGAAGCGGATA
AGAACTAGCTCACACGGGATCTAGTCCGCGCCATCCCGTTGACCAATGGA
AAGGCCTCTCACTGTTGGCAGAATGCGGGATGAGTGATCTCCGCGTTCTA
TCAGGACCCGCGCTAAATGCCGGGGGAAGGTCCCTGAATTGTAGTGATTT
TGTATGAAAGGCATATTGTAGGGTTTGTTGTGGCCAATGAATGTTTACGG
GAAGGTCCCTGGACTATAATGGTGACGTTGGTGGTGTGCCAAGCAACCTT
TACCACTCTGTGACCGAAGTTTCCTCTCCTACCATGCCCCCCCCATCTCA
AATCGCCACTGTTGCAGGTTGGCACTGTCAAGGCGGCGTGATGCTTGCGG
ATCTGCACACCCTTCACTCTCCGCTTCGCCGCTCCTGCTGTAGCTGCTGC
TGCTACTGCTGCTGCTGTGAAAAATACAACGCTGCTAGAGGTCACACGAC
AATCCCGGCGCTTCGCAAACAGGACACTTCTTATACGCTTTTATTCTCGG
AGGGCTTATTTTTTTCCGTCGTAGCTCCCTGTACGGGGGATCGTTGGCAG
TCCTGTCCGCGGAGACCCTTTCTTCTTCGCACGTCGTTGCGGCGGAACAT
TTGACGTTTCGGGATGCACGGAAAATCGGAATCGATCGTTGCTGGGTCGA
ACCCTTTCGTCGATTTTCCCGCTTGCTTTCCTTCATTGTGCGACCGCGTA
ATTGGTGAAGGTGAAACGATGTTTGCTGCTCCTTGCTCTTTTTAAGAGAA
TTTGAACACACGTCGCAGAATCGACTACAAGTATGCATACCCGTTTGAGA
AAACATTGCCTGCTAGTGGAAGGGGAGATAGGTGTGTTGAATGAAGTCGT
CGCAATGAATGGGGAGAGGAGCCTTCATCTGAGCGGGTCCTCTAGACAGA
TAATCACGATCACTTTTCTTGCCGAGACTCACAGCCGCACTCAGAACGTT
GGGTCTTAACCATGGAACAGCATCCACGATTCCCCTTATCCAAGTGAAGA
ATTATTTCGTCGATTTGGAGAGCCGAAGGCTGGGCTTGTCTTGTTTCTTG
TCGGCTCTCGCTGATCCTTTCTTGATTTCATTCCGAAGATGTCATCATCG
GTCCTACCGCTGCAGTTGGGTGTATGCTGCATCACTGATCATGATGAATC
AATGGGCCGTAGGAGGCTTCTTGGAAGTTTATGCTGTCGAAGCGGTGTTT
CTCGCGTGGTGTTGGCGGCATCATTGGTGAGGAATGGGCCTCCGAGGAAA
TTTCTTGGAAACTTCTATCGCCTTTGACCGCGAGAGGTCGAAGAATTAAC
CATTAACGTGTGTGCCCAGTGA

Coding sequence (CDS) from alignment at Scaffold_339:88443..89964-

>EsuBft1064_6a-0001 ID=EsuBft1064_6a-0001|Name=EsuBft1064_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_339:88443..89964- (Ectocarpus subulatus male Bft15b)
ATGGGGATCGACCGCTCCATCCGGTTGGCCGCCACGATGAGCGAGAGTAT
GGCGAACACGCCATCTAGTGATCGCGTGACTCTGTGGTGGCAACGATCGA
CCGCACTCATCCCGTTCATGAAAGAAGAGACAGCAGTAGCGAAACCCGAG
TGA