EsuBft1064_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1064_5a-0001
Unique NameEsuBft1064_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:106168..111335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FH37
ProteomeIdEsuBft1064_5
Protein domainsSignalP-TM
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length98
Hectar predicted targeting categorymitochondrion
Evalue2.9e-27
EggNOG OGsCOG0576@1|root,KOG3003@2759|Eukaryota
Ec32 ortholog descriptionGrpE nucleotide exchange factor
Ec32 orthologEc-13_000640.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K03687
Descriptionadenyl-nucleotide exchange factor activity
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_5aEsuBft1064_5aEctocarpus subulatus male Bft15bgeneScaffold_339 106168..111335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_5a-0001EsuBft1064_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 106566..111248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_5a-0001-exonagat-exon-78573Ectocarpus subulatus male Bft15bexonScaffold_339 106168..106583 -
EsuBft1064_5a-0001-exonagat-exon-78572Ectocarpus subulatus male Bft15bexonScaffold_339 106931..107026 -
EsuBft1064_5a-0001-exonagat-exon-78574Ectocarpus subulatus male Bft15bexonScaffold_339 107800..107942 -
EsuBft1064_5a-0001-exonEsuBft1064_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 111005..111335 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_5a-0001-exonagat-three_prime_utr-626Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 106168..106565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_5a-0001-cdsEsuBft1064_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 106566..106583 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_5a-0001-exonagat-five_prime_utr-390Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 111249..111335 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1064_5a-0001 ID=EsuBft1064_5a-0001|Name=EsuBft1064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=986bp|location=Sequence derived from alignment at Scaffold_339:106168..111335- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCTGTACTTCCAGCTTATCAAAGCAGCGCCTACGACCACGGACTAA
AACTGGCTCACGGCGACGCATCATCGTGTTGGTGACCATGTTTTCGAGAG
CCCTCCCTCGTGCTGCGAATGCCGCCGGCGGCCCCTGCGCAGCCACGTCT
CGACGGCCCCTCGCCGCATCCGTTCTCTCGGTTGCCAGGCCCCCTGGCGT
CAGCAGCAGCGCTTCAGCAGCAGCAAGGCGTGCTGCTACGGGTCGAGTGC
GAATGTGGGTTGCGAGCCTGAGCACTGCTGCTGATGTGGGAAAGGAGCAG
TCGCCTCTTGCGGCGCGGACTGGTGGACAAGGGGTGTGGCATCCGCACGC
TTTCGCGGGGCGGGGACAAAGAGGCTTGTGCCCCTTGGCAGGCGTTCGTT
CTCTTAGCACCAAGGCCAAGGAAGACGAGGAGGATAAGGATGAGGAGGGC
GGAGGGGCAGGGGGAGAAGGGGAGAGCAATAGCGAGAGCGAGGGGGAGGA
GGAGGACCAGGAGAGGTTAGTGGAGAAGCTCCTGAAGACGGAGAAGCAGC
TTGCGGACAACAAGGAGAAGACTGTTGTGCCACGATAGGGGTGGTTCCTG
CCCTGCCGGACACACATGTTTTGCTTAATAAGTTAACTGGACGGGACACA
CATGCTGCACCTTGTTGCTGTACCCACCTCAGCGCACGTACACACTTGCA
CAACCTGACTTAAACCCTTCAAATGAATATTGCAAAGGATGCACCTCATA
GATGTCCAATATTTTGTTGGCAAGAATGCCGTGGCGCTGGCCTTAAACGG
ATTCCACCATTTCGCGCAACCTCAACATCACACCTCGACAGCGAAAGCAA
ACCACTGATCATGAAGCCCATGGATTTTGGGCGGTAACACTTATGCGAAG
CTCCTGCTGGCACAACCTATTGGTGAAGGAGGAACTAGATCTGTCTCCTC
CTCACCCTCCTTCGATGTAGCCAGAACAAGCAAAAA
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protein sequence of EsuBft1064_5a-0001

>EsuBft1064_5 ID=EsuBft1064_5|Name=EsuBft1064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MFSRALPRAANAAGGPCAATSRRPLAASVLSVARPPGVSSSASAAARRAA
TGRVRMWVASLSTAADVGKEQSPLAARTGGQGVWHPHAFAGRGQRGLCPL
AGVRSLSTKAKEDEEDKDEEGGGAGGEGESNSESEGEEEDQERLVEKLLK
TEKQLADNKEKTVVPR
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mRNA from alignment at Scaffold_339:106168..111335-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1064_5a-0001 ID=EsuBft1064_5a-0001|Name=EsuBft1064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5168bp|location=Sequence derived from alignment at Scaffold_339:106168..111335- (Ectocarpus subulatus male Bft15b)
GTGTGCTGTACTTCCAGCTTATCAAAGCAGCGCCTACGACCACGGACTAA
AACTGGCTCACGGCGACGCATCATCGTGTTGGTGACCATGTTTTCGAGAG
CCCTCCCTCGTGCTGCGAATGCCGCCGGCGGCCCCTGCGCAGCCACGTCT
CGACGGCCCCTCGCCGCATCCGTTCTCTCGGTTGCCAGGCCCCCTGGCGT
CAGCAGCAGCGCTTCAGCAGCAGCAAGGCGTGCTGCTACGGGTCGAGTGC
GAATGTGGGTTGCGAGCCTGAGCACTGCTGCTGATGTGGGAAAGGAGCAG
TCGCCTCTTGCGGCGCGGACTGGTGGACAAGGTGCGAAGTGGGTGGAGAG
AGGTGATGCTGGACGCTTACAGCCCTGCTTGCCGTGGCAACCATGCGTGC
GGCTGCGGCGCAGTTTCTGGAAGGCCAGTTGATACTGCTATCATCTGGAC
TTACGAGAGAAGTGTGATGGACCCTTGCATGTAGAAAGGTCCTCTCTCTA
GCTACTGTATTCCCCCTGTTTTCGGCGAGAACTTGTTCATTGCCCTGCGT
GTTGCAGCAGAGGGGCGCACAATTCCACTAATGTTCCCCGCGCCCCCCGC
GTATCTGGGAGCCTAAGAACACGGCAGAGCTGCACAAGTATGTACCGTCT
TGCAGCAGTCCACTGGTACGCCAGCAGTCGTGAGAGACGCGATGTTGACT
CAAAGGACACAAGTAGATCTAGCAGTCTAGTGAATAACCTTGAATACAGC
GGAACACCAGTTTCAGTCATGTTGTATGTGGAGGAGGCTGGGGGACTGCT
GTGTAGCACAAGTGCAATTGATAGTCGGCAGCAAGCCTTCCCCTTTTCGT
CGTCCTTCTCAATATTGCGCAGGATGCTCATCGGTACATTTACAGTCACG
CCCATTCCCCTCTACCTCAATCGAGTCCTGCGTTGACTACAGCATCTGAT
TTTCACCAAGGGTGTGTGAATACCACAGCAGTGGCATGCTTGCCGTTGGT
GCTGCCTCTTTCTTTTTTCCCCACCGCACCACTGACTGTGGGTTCACTGG
CGCACAACAGTAAATAGTCGAAAGCTCTCACGATCAGCACGGTGGCGCGC
AACAGCATTTCCAACTTCTCTTTTCACAGCAGTTGCGCAAGCGGTAGCAG
CCGTAAGAGGGTGGAGAGATGTCACCCCCCTCCCCCAAGACTGATTTTCA
AAGCTCGATGACCCCGCAACCAAAAGCACACTTATGCTTACCGCAGTAGA
GGTCCGTGTTTGGTGCTGGGGTGCGCGCAAAAATTTCACCGGCACTAAAC
CAACACCGGCGCTATTCAGAGTACGCAACGACTTGATATTCCTATGTGTG
CGAGCCGAAAACACCGGCACTATACCGGCAACCGACACTTTCAACCGGCA
CTAACCAGGGACCTATGCTTGCACTAACACCAACGGCAGTGGCGGTGGTT
TTTCAAGCAGTCCCTCCGCGAAAAACAAGAAACGGGAATAAATGTCTGCC
AGTCATTGGTCGAAGGGGCTACAGTCCCTCCCCAAGAATCTGAGCTCCTT
GCCAGACAAAGGGTGACTTGGCTCCAGCATGAAAAGTGTGCCCAGAATAC
GTGGGGACACTGTACATTCTCAAGCCAAGTGTTCAATGTTTGCCAGTACC
AGGCGGTGTACAACTCCATCTCCCAGGGGACAGCAAGCCGGAGGCCGAGG
AGAGGCATAGCACAGCATGTCACACAGCGTACCACCTCAGCCAAGGATGA
TAGACCAAGTGTTCTCACGTGCGTTTCACGCACCTGAACCTAGGGCGGCT
ACAACGGTGCGGCAATTAAACTTTTGAATGCTGGGTCCCCAAAGTGTCCC
CATTCGGGCGTCCGGTACTGTAGAAGTGGTTAAGGACGTACCAGCACACG
GTTGTACTCTCAGCTTTCCTTCACTTGCACCATCACCGTTACCGAAGGGG
ACCATGCACCAAAAAGAGGTGGACAGATGGCACTCCCCCTTAGACCGGCT
TCCAAAGCTCGATTACTCCACGACCAAGATTGTCTTACCGTATACCGTAT
ACCGTATGCCGTACCGTGGTATTCCGTAAGAGGCGGAGAGATGGCACCCC
CCCTTTGACCGACTTCCACAGCTCGATTGTTCCACAACCGAATGGGGTAC
GGGAAGGAGCCCCGACACGTGCCTTCGGAAAGCCCTCGACGTCATGTTTG
CAAAATCACCGTGCGTACTGTGTGTGTGTTTATGTCTTTTTTGTTATGGC
GACGGTAGTCCCCCCACTTATTATCGTGGTGACAGGCGAACTACACTTTT
CAGTGCATGTAGAGTACCACACTTTTCAGTCTATTTTCTCGTCTCAACTG
CAACCATTCAGGGTAACACGGGAGGGATCAAACACCAGGAAGTTTTTCTA
GGAGGGTTATTAAGCACAACTTGGACCCTGGTTGTCGTAACGTGTTGGTG
TAGTTGTTTGATCCTTTCGTCTGCACTATGCGCCCGCACTCAAAAGGCCT
AATTTTGGACGATGTTGGAGATATTTATCCCTAGGGTTATGCTACGAACG
ACCAATGTTTAGGTTTTAGTGTAGGGGTTCTTTCCGATGGTGTTCTAATG
CTTTATTTTTTTGCTTTTATTCGAGGGCTATTCCAATTTCTTGGCTGCAA
AGTTCTCACGTGCGCCGAATGCTGCTGTTCTTACTATAATAGGTTGCTGG
TTTTCTTTCGAGCAGCATTGTTTCGTTGCACGCGTACAGACACGCGTACA
GCAGAGATCCCTCGATAGTGCCGGTCGAACAGTGCCGGTGTTGTCGGCTC
GCACACACTGAGTTTACAAGCCATTGTCAGTGCTTTTGAGTAGTGCCGGC
CCGGTATAGTGCCGCTGAATTTTCTGGGCACACACCGGCACTATACAGGG
ACCTCTCCTGCTGTACATCGTATACGACACAAGATAACACACCCCCTGGA
CCGATTTTGAAAGCTCGATTACTCCACGGCGAAGAAGATGCATAAACGAA
GCAATAGGATCTCGGAGAGCTATCGACCAGACGACTTCAACACCGCGTTT
TTCAGCGCTGCGACCCTTTCTGCTGTTGATAAATCGAGCTTTTGACAATT
GGTCCAGGGGAGGTGGTGTCTTGTTGTCATAATAGGTACTTACACAGCAG
CAGCCCTTTGTTCATCGGAAGAATCCTTTGATTTCTGACTAGATCGAAAT
ATGCTCTCATAGCTTCATGTTCCATGGCCACAGCTTCGTTTTTTTTTTTT
TTCGTCTGCCTACAGGGTGCGTGATGCTGCTTGTTTGCAGAATCCTTCTT
GACTAGATCGGCAGCATCCCCTACAAGCTTTGTGTTCATTGCCCGAAGTT
TTTTTGTGCCCCCGTTTGCGTGTGTGCGCGCTAAATTCACAAGGGGTGTG
GCATCCGCACGCTTTCGCGGGGCGGGGACAAAGAGGCTTGTGCCCCTTGG
CAGGCGTTCGTTCTCTTAGCACCAAGGCCAAGGAAGACGAGGAGGATAAG
GATGAGGAGGGCGGAGGGGCAGGGGGAGAAGGGGAGGTGAGAACGATGGC
CTCTGTTGTTGGTGTTGCTGTTGGTGTTGCTGCTGTTGGCGTTGCTGCTT
CTGTTGGTGTTGCTGCTGTTGGCGTTGCTGCTGCTGTTGGTGTTACTGCT
GCTGCCGTTGGTGTTGCTGTTGTTGCTGCTGCTGCTGATGTTGGTGCTGC
CTCTGATGTTGGTGTTGCTGCTACTGATGTTGGTGTTGCTGATGGTGTTG
CTGCTGTTGTTGGTGTTGCTGCTGCTGCTGCTGCTGGTGTTGCTGTTGGT
GGTGATGGTGTCGCTGCCACCACGATCATTTTTGTTGCTAGGTTCCTCCG
CGGCTGCGGCGTACGCACTGTTTCAGCCTACAGCTACTTTTTGTTTTTGT
TTTGTGTATTCTTGAGGAGGCGTCTAAACTTGGGGTTTGTCGCAAAAGCT
TTGCAATAGCGACGGCTTAACCCTAACTAACCCCCCAACACTGCCGTCAC
CAATCGGTTAACAACATAATCTTGAAGGACACTCCCCCTGATAAGGACAA
CTCTGTTCCACAGGCATGGTGGCTCGCAGCATGTACGTCGTGAGGAGGGG
TATCAACCTTGTGGATACTGCCCCCGCTTTCTTTAGCAAAAAAATCCATG
TGTATCCTTACCCGAAGGACGACTGTATCCATGAGATTTCATTTCGCCCT
CAGGGGCCCCGCAACTGCATGCATACCATTGTATTGGTCTAGCTGGCCTT
TTTTCCTTTCGTCGGTCTAAGGAGGCGTCGAAAACTGCTCGTGCTTTCGC
CGTCAGCAGAGCAATAGCGAGAGCGAGGGGGAGGAGGAGGACCAGGAGAG
GTTAGTGGAGAAGCTCCTGAAGACGGAGAAGCAGCTTGCGGACAACAAGG
AGAAGGTGAGAAGAAATTTCCAGGAAATTTCCGTTGTGGAAGAAGGACTC
TTGTGGCCCCGTGTTGAGTGTACGGGACAGACCAATGCCGACATACGGTA
GAGGTCCCTGTTACGTGCCGGGGTGTTCGCAAAAATTTCACCGGAAGTAT
ACCGGGCACCGGCACTATTCTTCAGAGTGCCTGAATAGTGCCCAAAGGGG
CACCTTTCAGGGCCTGAAAATCCCTCAATTGTGGCAGACCGGCACTATTG
ACGAACTGTGTGATTTCAGAGTTCAGCGCTTTGCTTTGCGAGGCCAACAG
ATTACCCCGTGAAACGTACATGGTGAGATCATGGCATGGGCGTCGCGGGC
AGACTGTTGTGCCACGATAGGGGTGGTTCCTGCCCTGCCGGACACACATG
TTTTGCTTAATAAGTTAACTGGACGGGACACACATGCTGCACCTTGTTGC
TGTACCCACCTCAGCGCACGTACACACTTGCACAACCTGACTTAAACCCT
TCAAATGAATATTGCAAAGGATGCACCTCATAGATGTCCAATATTTTGTT
GGCAAGAATGCCGTGGCGCTGGCCTTAAACGGATTCCACCATTTCGCGCA
ACCTCAACATCACACCTCGACAGCGAAAGCAAACCACTGATCATGAAGCC
CATGGATTTTGGGCGGTAACACTTATGCGAAGCTCCTGCTGGCACAACCT
ATTGGTGAAGGAGGAACTAGATCTGTCTCCTCCTCACCCTCCTTCGATGT
AGCCAGAACAAGCAAAAA
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Coding sequence (CDS) from alignment at Scaffold_339:106168..111335-

>EsuBft1064_5a-0001 ID=EsuBft1064_5a-0001|Name=EsuBft1064_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_339:106168..111335- (Ectocarpus subulatus male Bft15b)
ATGTTTTCGAGAGCCCTCCCTCGTGCTGCGAATGCCGCCGGCGGCCCCTG
CGCAGCCACGTCTCGACGGCCCCTCGCCGCATCCGTTCTCTCGGTTGCCA
GGCCCCCTGGCGTCAGCAGCAGCGCTTCAGCAGCAGCAAGGCGTGCTGCT
ACGGGTCGAGTGCGAATGTGGGTTGCGAGCCTGAGCACTGCTGCTGATGT
GGGAAAGGAGCAGTCGCCTCTTGCGGCGCGGACTGGTGGACAAGGGGTGT
GGCATCCGCACGCTTTCGCGGGGCGGGGACAAAGAGGCTTGTGCCCCTTG
GCAGGCGTTCGTTCTCTTAGCACCAAGGCCAAGGAAGACGAGGAGGATAA
GGATGAGGAGGGCGGAGGGGCAGGGGGAGAAGGGGAGAGCAATAGCGAGA
GCGAGGGGGAGGAGGAGGACCAGGAGAGGTTAGTGGAGAAGCTCCTGAAG
ACGGAGAAGCAGCTTGCGGACAACAAGGAGAAGACTGTTGTGCCACGATA
G
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