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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7G1R1 |
| ProteomeId | EsuBft1064_3 |
| Protein domains | SignalP-TM |
| Protein domains | PTHR12746 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 60s ribosomal export protein nmd3 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:nmd3 pe:1 sv:3 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2150 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.38e-81 |
| EggNOG OGs | COG1499@1|root,KOG2613@2759|Eukaryota |
| Ec32 ortholog description | NMD3 |
| Ec32 ortholog | Ec-13_001070.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K07562 |
| KEGG Pathway | ko03008,ko03013,map03008,map03013 |
| Description | ribosomal large subunit binding |
| COG category | J |
| BRITE | ko00000,ko00001,ko03009 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0006810 |
| GO | 0005515 |
| GO | 0005488 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1064_3a-0001 ID=EsuBft1064_3a-0001|Name=EsuBft1064_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2150bp|location=Sequence derived from alignment at Scaffold_339:137237..143907- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGTCAACGAGCTTCGCCAAGTTCCCTTCCATCGCTCTCCTCGGGAA GAAGGGGAGATCCGCCGCGTCCTTGGCAGATGGGACGAAGAGCAAGAGTC TGTGGGAAGTAGTGGTGGCCCTCGATAGCGACGTCGGTAGCGCTGACGAC ACCTTCACGGTGCTGACCCACCTCAGCGCGGACTCGGCGGGGCTGCATCC CCTGGAGGCGGGCGACATGCTGCTGGGCTACGACCTCAGGGGGAAGAATT TCAACGAGGCTCTCCTGAGCGGGCTATCCGGCGACGTTCCGGACATCGTT CTCGTGAAGAGGGCTCCTCCACCAAAGACAGCGCAATCCAAGAAAAAGCG CTACAAGCTGCGGTCGTTGGACGTGTCGGGCGGCGGCGGAGGAGGAGGGG CGGATCACGGCAAGGAGGGCAAGCGGGGGGGCAGCGGCGGCGGCGGGAAG GCTTCACACGCGGGGGGCAGCGATGAGAGAGAGATGGCGGCACTCATCGA AGAGCTCTCCATGGACGAAGAGCTGAGGGCGGAGCTAGGGGTCGTGCCAG AGCCGGACGAAGACCCCAGCGGAGCGGTGGCGGCAGATCCCGTAGGGGAA TATGAAGAAAGGTAGGGTCATGCCTGAGCCAGATTAAGACGCCAGCTGAG CGATGGGGGCAGACCCTGAAAGAGAGGACGCGCAGAAGAAGGCTAGAAGG GGTAGGGGCACCGCGACTGGATGCTAGCCTGCGTGGGGTCATCCCTGGGC CACGTGAAAACGTCCGCAGAACGATAATGGCGGCAGACCCGGAAAGGGGG AATACGTAGAAGAACGGCAGGGTGGGGTATGGGCGCCGCGTGGGGTTGTT CACGACTGTGGCAAGCCAGGCGCTCCCAGGCGACAAATTTTATTCTGCTC GGACTGCCGTGGAAGCGAGATAGACTGTGCAGGTGTAGAGCAGAGATAGT TGAAACCCAAGACGTTTTTCTTTGCTTTTGACTGCCGTGAAGATGTCTGA TGGGTGACTGCTGTCCTTCGCTTGGCTATGTACGAGCTATTGCCTGCGTC CCTTCCTCGTCAAAAGTTTGGGCGGTCAGTCCCGAACAGCGTGACGCGAA AGCCTTCCGACAACGTACCATTTGATTCTGGCATGCTCTTCGTCGTTCAG AGAAAAATGAGGTCAAGGGGTGTGTGGATCCTTTGCCACCTAGTGACGGT TGTATATTGCTGCAGTACGCGCTACGCGCCACAGCAATTGTTCGATTGTT CGTCTAGCGTGGGGCGAGACTGGGGCTTGATGACTGCCAGGGCGAGAGCG CCATCGGAGTTGAGAGGGCGAGGCCCACGGGCGGGATCAGGACTATCGCG GCGCGGCAGGTTTCCTTGAGGCTGCCGGTGTGCACGATAGTTAATAGTGG TGTTGGAGTTCAGCGCTCCTCTTTTTGTTGCGGGAGAGATGTCATAGGCT AGCTGTCGGCCGAGACAAAGCGGCTTGTGTTGACGAAAAAGGAGAGAGCC TCACAAACAAGGCGGATTGAAGTTGGACATACATTCACAGCCCCTCTACA AGGCAGGTATGCGCCAGACCGGTTAGCCCGCCCTCTACAGGGCACCCGCC TCCTTCGATGCGTAGGACAACTTGATGGTTCAGTCTGTCCCAGCCAATTG TACCCGCCTTATAAATGACACCTACCATGTATAACCCGCGTTGTAGAGGG CCAAGGACTGTAGGAGAATCCTGAAGTGAGATATGATAGCTGTCGACGGA GGAGGGGTTCCCCCGTGGATGGCAGTTGGGGGGTTAGAGACCTCAGAAAC GAGGCAGGTTCAAATTGGACGCGGGAGAATCCACAAGTCTCGTGTGGAAA AGATACATAGATGTCGCAGACTGGCTGCCGGGTTGCGTGGGTGAAAAGGG GGGTTTGAGGGCCTCAGAGCCCGCAGCACGTTGAAGTTGAAGGTTGGGAC ATCCAGTCGTCTCGTGTGGAGAAGATACGGAGGCAATTGTCTTGCGCATG CCGGAGATCAGAGTTGTTTGGTGGTAACGAGTTTTCTTTGACATCTCTCA GTGGGAAAGGGTAAGTGAGGCTGTTGGATCACTCCAAGCCTTCACTCCGA AACCTAAAACGGAGACATATTTTTCACCGCTTCCTTCACCCCTGCTGCTC back to topprotein sequence of EsuBft1064_3a-0001 >EsuBft1064_3 ID=EsuBft1064_3|Name=EsuBft1064_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MVSTSFAKFPSIALLGKKGRSAASLADGTKSKSLWEVVVALDSDVGSADD TFTVLTHLSADSAGLHPLEAGDMLLGYDLRGKNFNEALLSGLSGDVPDIV LVKRAPPPKTAQSKKKRYKLRSLDVSGGGGGGGADHGKEGKRGGSGGGGK ASHAGGSDEREMAALIEELSMDEELRAELGVVPEPDEDPSGAVAADPVGE YEER back to topmRNA from alignment at Scaffold_339:137237..143907- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1064_3a-0001 ID=EsuBft1064_3a-0001|Name=EsuBft1064_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6671bp|location=Sequence derived from alignment at Scaffold_339:137237..143907- (Ectocarpus subulatus male Bft15b) ATGGTGTCAACGAGCTTCGCCAAGTTCCCTTCCATCGCTCTCCTCGGTAT
GCACGACAAGGCAGATGTGGTCGTCAAATCCCCTCTCACGAATCGATTCT
GGCTATTTTCCACGTGCGGTTCTTCCTCTTTGCCGCTGACAGCGCCGACA
TGCCCGCAGACCGGTACTGGCGCTCCCCCCCCGAGCCCCTCCTGTCCGCG
TCCTCCCTCACGGAGTTCGTCGTTCTTGACTGCGAGCCNGGGGGGGGGGG
GGGGGGGGGGGGGGGGGCGGGAGGGAAGAAGGGGAGATCCGCCGCGTCCT
TGGCAGATGGGACGAAGAGCAAGAGTCTGTGGGAAGTAGTGGTGAGCCGG
CTCCCCGCTAACACGGCTTGTCTCGTGTGCCGTGTACGTGCGTGTGTCGC
TTGTTTGCGTCGACCGCGCTAAGAGGCTCACCAATGTAAAGACGTCAGTC
TCAGTGCGGTGTGCGTCTGTTTTTGTTTATATGGACGTTGCGGTGAGCCA
GACCTCCGCTGCGCACGAGCAGCTGCAGCTTTGGTTGTGTTTTCATTCTT
ATTGTTGCTGTTGTGATGGACGCCAGGGCGAAGAACATGGGTCTCTAGGA
GGTTGTCGTGAGCCAGACACCCCCCGTTGAGCAAGAGGAACGAAACACTA
ACTTCGTTTTTTTTTGTCGATTCGAGTTCCTTCACGGCAGCAATGCTGTG
TTTGTGAGCGTTGATTGAACGTGACGAACAATGAGAAAAATAATGCAATG
TGTTCTCCTTAAAGGGGAGGCCATTCATTTTCCGTTTGTTGCACCGGCTC
GTGTGGAGTCATCTTCTAGGAATGATTTCGTGTAAGAAAATGGCATCGAA
TTTTCACGAATGGTAGGAAGACAAGGGTTAACAAACACGACTCAGTGGCG
AAATTCTAGACTAATCTCATGAAGGTGCGTACTTCAATCCAAACATGCAT
GCTTGCTGCTTCTGCTCTCAAAACGCGTTGCCAAAAAAAAAGGTGGCCCT
CGATAGCGACGTCGGTAGCGCTGACGACACCTTCACGGTGCTGACCCACC
TCAGCGCGGACTCGGCGGGGCTGCATCCCCTGGAGGCGGGCGACATGCTG
CTGGGCTACGACCTCAGGTGTGCATACGATACAGTCGTAATTGCTACGGT
CTACGGTCCATGCACAACAATTTTCCCATTCACGTTTTGTGCGATATCTT
TCGAAAGGATAAGATATGAAGAACGAAGCAACGATATTCGTGATCGCCTC
ATCGAGCTGTGTCGATCGCTGTAGAGTTTGCTTTTTTTTTCGTTTTGGGA
GAATGCAACACTTTGGGGCAAAATGATCCACTGAACCCCCCTATACCACC
ATGGTGTAAGAAATAATCATTTTCGTTCGCTGCTGCAGTGGTCAATGATT
TTTTTTTTTGTTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGAG
GTCAGTCTCACTGCGATTGGAAATACAAAGTACTTCTCAAGGCCACCATG
ATTTGGGACCCTGTGACGGGGCGTCATGGGGGAGTCTATGCTACTCTCCG
GATTAAGACAGAAACCAATGTAGTAATAACTGCTAGCGTCTATCAAGGCT
GTTAAAATGATGTGGGACCCCGTGAAGGGGGCGTCATGGGGGAGTCTAAG
GCACTCTCCGGATTTAAGACAGATACCTTGGAAGCAATATCAGAAGGACA
CTGCACGTGTTGACCATGGCTGCTACTGCTGTGGAAGCGCGTTTGTTTCG
GATTGTGTTGGCGATTGTGTGTGTCATTTTCGTGATGATAGTGTGGGAAA
ACAGCAATTGGCGAATTGTATACCTCGACAAGAGTTAACGATCGCCGTGA
AGTCTTTACACCATCTACACCATTTTTTTTTTTTTCGATTGTTGTTGGGC
TTCGACCTCAGGCTTGCTTACGATGAGTAATTTGTTTATTTTTTGCTTGT
TTTCATAGCTGGTGATGTGGGAAAAAAAATAGTATCCTTTGCGATGGCGA
TGGCTTTGTTCGTCCCATGAGTGCCGAGACTCCATTTTGCCTTCTGTTTT
CGGAGCTCGACCATGGACATTTCTCGTGATCTTGTGTTTGTCGTTACAAA
CTCCGAGGTGAGGTCTCTTGCCAGCCTGAGATGCTCGCAACACCTTCCTT
GCCGATCCCAAAAAATGCCCCCGAGAGGTTGGAGCATGATGAGCATGTTT
GCCCACAGGAGAGGGGACGTGACACGATGATTGTATCCTGCTATCATCTT
CAAAAACGTAACACGCACTAACGCTGCTTCGGCGGTTCTTGTCGTTGTTC
GCAGGGGGAAGAATTTCAACGAGGCTCTCCTGAGCGGGCTATCCGGCGAC
GTTCCGGACATCGTTCTCGTGAAGAGGGCTCCTCCACCAAAGACAGCGCA
ATCCAAGGTACTGTACCTTCTTGTTTTTTTAGTTATACATGGAATTGATA
GAGGGACTATCCGTTCGAGGTTTTTGTCGTTTTGTGCACAGCAAAATGCC
AGATATTCCTCCATTTGCACACCACCACACAAGGTGATGTTCCGGACGTC
GTTCTCGTGAAGAGGACGCCTCCACCGGAGACAGCGCAACCCACGGTGCT
GTACCGCTTCTTAAGGAACTATACATAGTGTCAAAGGAGTACTACCCGTT
CGAGATACAGTCTAATGTTTTCGTGCGCAGCACAATGCCAGATCTAGCCT
GTTTTGCCCAACACAATCCAAGGTACTATCTTTTTTTTTGGGAGCTATGT
ATACATAAAATCAAAGGAGTTCTACGCGTTCGAGATTTAATCTTTTTCGT
GCGCAGCACAATGCCAGGTGTACCCTGTTTCAACACAATCCAAGGTACTA
CTGTTTTTTTTTGGGAACTATGTATACATCAAATCAATGGAAGACTACAC
GTTCAAGATATGCCGTTTTTCGTGCACAGCACAATGCCAGGTGCACCCCT
ACTTTTCAGTTTGATGGCACAATGCAAGGTACTTTCGTGCACAGCACCCT
GCAGGGTACCATTTTTTGGGCACAGCCCAACGCAAGATGTACTTTTCGTT
CGTCCTCTTTTTTGCCCGAAAACTTCCACATCTGAACATGCCCCAAATTT
CCTGCGTGACCTTCCTCCTGTTCGTGAAATCCGGCTCACGCGCACAGAAA
GTATTGCCGGAACGTCGATGGGGAGACACAATGCCCGAATGCTTTGCTAC
GCCCACCCATTGTTCGCACACTCTTGGTGCATGGTCAAGGAAAATGTGAA
TGATAGCACCCGGAGACGGCGGATGATAAGAAAACCGCCTTCGCATGTCC
ATCAACAAGAAGATCAACCTTTTTCCAGGGAAAATATTTACATGTTCTAG
AGAAGAAGATTCACAGATTCCGGAGACGTTTGGCTGACTGATGTTGTTAA
TAGGCGAAACGTTATGCCGTCCAAGCTGAACAAGGGCTACACCCTTATAC
GGTCGATAGGCAGTTCATGAACAACAAAATTTGCAACACCCCGAGATTTG
ACTGGTACTAGCAAAAATCGCGATGCTACCTTTCCAGACCAACAGAAAGG
CTGCAAGCCACGATCGCTAGAAGAGAAACGAGTTCGAAGTTTCATTCACT
ATCCAGACATCTCGATGACAAGAGAAGGCGATTCTGGTGTCACCCGGTGC
CAAGCAGAAAAAGCGCTACAAGCTGCGGTCGTTGGACGTGTCGGGCGGCG
GCGGAGGAGGAGGGGCGGATCACGGCAAGGAGGGCAAGCGGGGGGGCAGC
GGCGGCGGCGGGAAGGCTTCACACGCGGGGGGCAGCGATGAGAGAGAGGT
GTGCTCATAGTTTGTGCCCGCGCTTCAGAACCTTAGTCCTTGACTGGTTC
GCTATTTTATTTTGCAACAGGGATGCGTCATGCCGCATGGTAACCATGTA
CTCCTCCCATGCATTTGTTTTTTTGTAGAGATGCATTATTCCCTCCCTGA
CTGATAAGCTGTTAAATTCATGGCAACATTGATAACGCATTCCGCACGAT
AACCTTACTCCTGACCGGTTCGCTATTATTTTTGGTAGGAACAGAGATGC
CATATTCCGCTCAAGAAGCTTGCTCGCTGCCTGGTTGGCAATTTTTTTAG
CGAGAGAGATGCCCCGTGCCGCATGATAACCACGAGCTCCCTTCCTGACT
GGTTTGCAATTTTTATAACTATCAGAGATGACTCGCTCCGTACGATACCC
GCGCACTCCCTCGCTGACTTATTTTACTCGAGAACAGAGATGCCTCATTT
CCTCCCTGACTTGTTAGCTATTTTATTTTTTAGGAAAGATGCCAGATTTC
GCACGATACCCGAAGTCTCTGACTAGTTCGCTATTTTTTTCGTAGACAGA
GAAGCCTCCTGTCCGCACGATGGCCACGAAGCAGTTCGGAATTCGTTCGA
TACAGATAGCGCCCGCGATGGTTCGGTCGTAGCGCTCCGTCAATGGGTTC
GCGTCGATATGGGTGGGCGGGTCAGTGGATCCCAACGTTCCGTCGAAGCG
TTCCGTCGAGATGTTCTGTCAAGGCGTTCCGTCGTCAAAGCGAACCGCCG
AAGCGTTCCGCCATGGTGTTCCGTCGTATGTTGCGTTCCGTCAAAACCTC
GGCGTCATATGTAGTGAATGGGCGGGTCGGTGGGACATATAAACGTACGT
ACCCATATGTTTTTTCGTGCTCCGATGTTTTGGGTTGCCATCGGGTTGCC
GTTGGGGAAATTGACCACCGTTAGCACTACGGTACATAACATACCAGGTA
TCGGTGCGAAACGGTACAGTTAGCGCCGACGATAAAGAAACAAATCTTCA
AGAAACAGAGGCTAAGATTTGGCGATAAATATGCATGGTCGACAAAAATA
GCACACCTCAGTCGTGGATCCTACACCAAAATCCACATAATGAAATACCT
ATGCTCGACGGTGGTGTCCGAAACAAGAAATTGAAGCCTCGACCCCGTGT
GGACGTTTCTTAAACGCGGACGCAAACTGTACTGATGTGGCGGATGATGA
TTAGATGGCGGCACTCATCGAAGAGCTCTCCATGGACGAAGAGCTGAGGG
CGGAGCTAGGGGTCGTGCCAGAGCCGGACGAAGACCCCAGCGGAGCGGTG
GCGGCAGATCCCGTAGGGGAATATGAAGAAAGGTAGGGTCATGCCTGAGC
CAGATTAAGACGCCAGCTGAGCGATGGGGGCAGACCCTGAAAGAGAGGAC
GCGCAGAAGAAGGCTAGAAGGGGTAGGGGCACCGCGACTGGATGCTAGCC
TGCGTGGGGTCATCCCTGGGCCACGTGAAAACGTCCGCAGAACGATAATG
GCGGCAGACCCGGAAAGGGGGAATACGTAGAAGAACGGCAGGGTGGGGTA
TGGGCGCCGCGTGGGGTTGTTCACGACTGTGGCAAGCCAGGCGCTCCCAG
GCGACAAATTTTATTCTGCTCGGACTGCCGTGGAAGCGAGATAGACTGTG
CAGGTGTAGAGCAGAGATAGTTGAAACCCAAGACGTTTTTCTTTGCTTTT
GACTGCCGTGAAGATGTCTGATGGGTGACTGCTGTCCTTCGCTTGGCTAT
GTACGAGCTATTGCCTGCGTCCCTTCCTCGTCAAAAGTTTGGGCGGTCAG
TCCCGAACAGCGTGACGCGAAAGCCTTCCGACAACGTACCATTTGATTCT
GGCATGCTCTTCGTCGTTCAGAGAAAAATGAGGTCAAGGGGTGTGTGGAT
CCTTTGCCACCTAGTGACGGTTGTATATTGCTGCAGTACGCGCTACGCGC
CACAGCAATTGTTCGATTGTTCGTCTAGCGTGGGGCGAGACTGGGGCTTG
ATGACTGCCAGGGCGAGAGCGCCATCGGAGTTGAGAGGGCGAGGCCCACG
GGCGGGATCAGGACTATCGCGGCGCGGCAGGTTTCCTTGAGGCTGCCGGT
GTGCACGATAGTTAATAGTGGTGTTGGAGTTCAGCGCTCCTCTTTTTGTT
GCGGGAGAGATGTCATAGGCTAGCTGTCGGCCGAGACAAAGCGGCTTGTG
TTGACGAAAAAGGAGAGAGCCTCACAAACAAGGCGGATTGAAGTTGGACA
TACATTCACAGCCCCTCTACAAGGCAGGTATGCGCCAGACCGGTTAGCCC
GCCCTCTACAGGGCACCCGCCTCCTTCGATGCGTAGGACAACTTGATGGT
TCAGTCTGTCCCAGCCAATTGTACCCGCCTTATAAATGACACCTACCATG
TATAACCCGCGTTGTAGAGGGCCAAGGACTGTAGGAGAATCCTGAAGTGA
GATATGATAGCTGTCGACGGAGGAGGGGTTCCCCCGTGGATGGCAGTTGG
GGGGTTAGAGACCTCAGAAACGAGGCAGGTTCAAATTGGACGCGGGAGAA
TCCACAAGTCTCGTGTGGAAAAGATACATAGATGTCGCAGACTGGCTGCC
GGGTTGCGTGGGTGAAAAGGGGGGTTTGAGGGCCTCAGAGCCCGCAGCAC
GTTGAAGTTGAAGGTTGGGACATCCAGTCGTCTCGTGTGGAGAAGATACG
GAGGCAATTGTCTTGCGCATGCCGGAGATCAGAGTTGTTTGGTGGTAACG
AGTTTTCTTTGACATCTCTCAGTGGGAAAGGGTAAGTGAGGCTGTTGGAT
CACTCCAAGCCTTCACTCCGAAACCTAAAACGGAGACATATTTTTCACCG
CTTCCTTCACCCCTGCTGCTC back to topCoding sequence (CDS) from alignment at Scaffold_339:137237..143907- >EsuBft1064_3a-0001 ID=EsuBft1064_3a-0001|Name=EsuBft1064_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_339:137237..143907- (Ectocarpus subulatus male Bft15b) ATGGTGTCAACGAGCTTCGCCAAGTTCCCTTCCATCGCTCTCCTCGGGAA GAAGGGGAGATCCGCCGCGTCCTTGGCAGATGGGACGAAGAGCAAGAGTC TGTGGGAAGTAGTGGTGGCCCTCGATAGCGACGTCGGTAGCGCTGACGAC ACCTTCACGGTGCTGACCCACCTCAGCGCGGACTCGGCGGGGCTGCATCC CCTGGAGGCGGGCGACATGCTGCTGGGCTACGACCTCAGGGGGAAGAATT TCAACGAGGCTCTCCTGAGCGGGCTATCCGGCGACGTTCCGGACATCGTT CTCGTGAAGAGGGCTCCTCCACCAAAGACAGCGCAATCCAAGAAAAAGCG CTACAAGCTGCGGTCGTTGGACGTGTCGGGCGGCGGCGGAGGAGGAGGGG CGGATCACGGCAAGGAGGGCAAGCGGGGGGGCAGCGGCGGCGGCGGGAAG GCTTCACACGCGGGGGGCAGCGATGAGAGAGAGATGGCGGCACTCATCGA AGAGCTCTCCATGGACGAAGAGCTGAGGGCGGAGCTAGGGGTCGTGCCAG AGCCGGACGAAGACCCCAGCGGAGCGGTGGCGGCAGATCCCGTAGGGGAA TATGAAGAAAGGTAG back to top
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