EsuBft1064_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1064_12a-0001
Unique NameEsuBft1064_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:8868..10917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1064_12
Protein domainsIPR016159
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length76
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_12aEsuBft1064_12aEctocarpus subulatus male Bft15bgeneScaffold_339 8868..10917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_12a-0001EsuBft1064_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 8868..9559 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_12a-0001-exonagat-exon-78592Ectocarpus subulatus male Bft15bexonScaffold_339 8868..8888 +
EsuBft1064_12a-0001-exonagat-exon-78591Ectocarpus subulatus male Bft15bexonScaffold_339 9317..9502 +
EsuBft1064_12a-0001-exonEsuBft1064_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 9554..9883 +
EsuBft1064_12a-0001-exonagat-exon-78593Ectocarpus subulatus male Bft15bexonScaffold_339 10694..10917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_12a-0001-cdsEsuBft1064_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 8868..8888 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1064_12a-0001-exonagat-three_prime_utr-623Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 9560..9883 +
EsuBft1064_12a-0001-exonagat-three_prime_utr-624Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 10694..10917 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1064_12a-0001 ID=EsuBft1064_12a-0001|Name=EsuBft1064_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=761bp|location=Sequence derived from alignment at Scaffold_339:8868..10917+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTCGTCGTTCTGACGGTGTGGGGGTTCCGTGAGCACAAGAGCAA
CTTCGCCCTCCTCATCTCCCTGGGCGAGAGCGAGAAGGCTGCCATCTTCT
TTGTCGGGGAGAGAAGCGCCATGATCAGGCGTTCCCTCAGGCTGGTGGAG
GTTACCGCGGACCCCCTCTCTTACGTGGGAGTCCTATCGGAAACGTTCTT
CGGACAGGAATAAGAAAGGTTCTTCGGACGTTTGCTTGAAATAGCCTTCT
CGTGCCAGGTATGAAAAACGTTCTTTGGAAAGGCAAAAGAACAGAACGTC
ATTCGGGTTGGTACGAGAAGCGTTGATCCGATAGGAATAAGCAAGGTTCT
TCGGACGTTTGCTTGAAAGAACTTAACCATCACAGGTATGAGGAACGTTC
TTCGGATAGGTACTGTAAGTGAAACAAAGGATAGGCATGAGAAACGCGCC
ATGGTCAGGCGCTCCCTTAGGCTGGTGGAGGTTACCGCGGACCTCCTTTC
TTACGTGGGGGTCCCATCGCATACGTTCTTCGGACAGGGATGCGAGGTCA
ATGGTCTAACGACTACGGCAAGGACGACGATGAGTACACCCCCACGCCAC
CGCTTGTTATCGGAGAGACTTTGGACGCGGTGTCGGCATTCCTGAAACTT
CTCTGCGAACCCGCCAGGATCCACTAGCAGATTTCAATCAGGCCGGCTTC
CCAACGAACATAAGCCATCTCGTATTTGCTGGAATATCAAGCACGAATAC
ACGTTTTACTG
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protein sequence of EsuBft1064_12a-0001

>EsuBft1064_12 ID=EsuBft1064_12|Name=EsuBft1064_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MMFVVLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVE
VTADPLSYVGVLSETFFGQE
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mRNA from alignment at Scaffold_339:8868..10917+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1064_12a-0001 ID=EsuBft1064_12a-0001|Name=EsuBft1064_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2050bp|location=Sequence derived from alignment at Scaffold_339:8868..10917+ (Ectocarpus subulatus male Bft15b)
ATGATGTTCGTCGTTCTGACGGTGAGACTGGAGGTCTCGGGAAGGGTTGA
TGTTTTCGTTGTGTTTGTTGCTGTTGCTGTTGCCGTGGTGTAGCCTAGTC
GTTCATACATGCGCACAGTTCTAGATGTGGGGGTTCCGCGCCCACAGGAG
CCGATTCGCTTTTGTTTCATTATTGCCAAATTGATCCCTGAAAGAACAAC
CGCCCCGCTTCAATATATTAGGGCTACAGTCGCCAACCCAACAAATGCAT
CATCCCTGGTAAAACAATGTCCCCGCTTCCATCAACTAGTTGCGGTTACA
TTCGCCAACCCAACCTGAAAAAGCAATTGCTCCGCGCCCATGAATTGCTT
ACGGTTTCAGTCGCCAACCCAACAAATGCATCCCTGGCAAAATAGATTGC
CCCACTTCGATGAAATGATAACGGTTACATTGTCAAACCTAAAACACAGG
TGTGGGGGTTCCGTGAGCACAAGAGCAACTTCGCCCTCCTCATCTCCCTG
GGCGAGAGCGAGAAGGCTGCCATCTTCTTTGTCGGGGAGAGAAGCGCCAT
GATCAGGCGTTCCCTCAGGCTGGTGGAGGTTACCGCGGACCCCCTCTCTT
ACGTGGGAGTCCTATCGGAAACGTTCTTCGGACAGGTATCAGAAAGAACG
CTGTTCGGATTGGTATAAGAAGCGTTGATCGGACAGGAATAAGAAAGGTT
CTTCGGACGTTTGCTTGAAATAGCCTTCTCGTGCCAGGTATGAAAAACGT
TCTTTGGAAAGGCAAAAGAACAGAACGTCATTCGGGTTGGTACGAGAAGC
GTTGATCCGATAGGAATAAGCAAGGTTCTTCGGACGTTTGCTTGAAAGAA
CTTAACCATCACAGGTATGAGGAACGTTCTTCGGATAGGTACTGTAAGTG
AAACAAAGGATAGGCATGAGAAACGCGCCATGGTCAGGCGCTCCCTTAGG
CTGGTGGAGGTTACCGCGGACCTCCTTTCTTACGTGGGGGTCCCATCGCA
TACGTTCTTCGGACAGGTACAACTTGTGCGGCCTACGGTATGCGTGGCAT
GTTCCTGAGGCATCTCGCTAGCGTTGAGGCGAGGCGGTATTGCGGCGTGT
TACGACACGGGCTTAGCTGTAGCTTCTTGAGGGTGTGTGGGTGTGTCTTC
AATTGTTGGCATCGACCCCGCCAGATGGCTGACTACATGAAAATTCGCCA
GTCTTAGTAGTTGCTGGGATAAGGAGGCACGAACATGCTGTGGAGTCATC
GAGCTCCGAGAGTGTGCGTGTCTTTGATATTCGCATCGACCGTGCTAAGC
GACTGACCAATGACAGACGTTAGTCTCAGTGCGGTGGCAAGCACAACAAT
GCCTTCTAAAGGCCACTATCTGGGACCCTGTGATCGAGTGTCCTGGGGGA
GTCTACGCTACTCTTCGCATTAGCGACAGATGGCGTAGCAATAACAGAAG
AAACATTTGTCTGTGTGTGTATGTGTGTGTTTTATTGGCATCGACCGCGC
TAACCGGCTGACCAATAAAGATATGTCAGTCGCTAGCCTGTTGTTTTCGT
TTCAAACACTACTTTGCCCCGACACCGTGATGTCCTTGTGTTCGTGCTTG
TGTGTGTGTCCCTGTCGAACATAATTGTTGCCCCCCCATGCCACCGCTCC
TCCCCTCGGTGTTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGAC
GTTGTAAAAGAAGCCATTTCACTTCGTGAACTCGGCAACTCGCCGAAAAC
CTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACC
CGGCCTTCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACG
ACTACGGCAAGGACGACGATGAGTACACCCCCACGCCACCGCTTGTTATC
GGAGAGACTTTGGACGCGGTGTCGGCATTCCTGAAACTTCTCTGCGAACC
CGCCAGGATCCACTAGCAGATTTCAATCAGGCCGGCTTCCCAACGAACAT
AAGCCATCTCGTATTTGCTGGAATATCAAGCACGAATACACGTTTTACTG
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Coding sequence (CDS) from alignment at Scaffold_339:8868..10917+

>EsuBft1064_12a-0001 ID=EsuBft1064_12a-0001|Name=EsuBft1064_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_339:8868..10917+ (Ectocarpus subulatus male Bft15b)
ATGATGTTCGTCGTTCTGACGGTGTGGGGGTTCCGTGAGCACAAGAGCAA
CTTCGCCCTCCTCATCTCCCTGGGCGAGAGCGAGAAGGCTGCCATCTTCT
TTGTCGGGGAGAGAAGCGCCATGATCAGGCGTTCCCTCAGGCTGGTGGAG
GTTACCGCGGACCCCCTCTCTTACGTGGGAGTCCTATCGGAAACGTTCTT
CGGACAGGAATAA
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