EsuBft1064_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1064_11a-0001
Unique Name	EsuBft1064_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_339	contig	Scaffold_339:26246..27263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft1064_11
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	101
Hectar predicted targeting category	other localisation
Evalue	4.44e-14
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_11a	EsuBft1064_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_339 26246..27263 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_11a-0001-exon	EsuBft1064_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_339 26246..27263 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_11a-0001-exon	agat-five_prime_utr-385	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_339 26246..26271 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_11a-0001-cds	EsuBft1064_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_339 26272..26856 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_11a-0001-exon	agat-three_prime_utr-622	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_339 26857..27263 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1064_11a-0001	EsuBft1064_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_339 26272..26856 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_339:26246..27263+
coding sequence from alignment at Scaffold_339:26246..27263+

spliced messenger RNA

>EsuBft1064_11a-0001 ID=EsuBft1064_11a-0001|Name=EsuBft1064_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1018bp|location=Sequence derived from alignment at Scaffold_339:26246..27263+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGAGAGGAAGACGACGG
TGGTGACGGACGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCG
GCCATCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCAT
CGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGG
AGATCATATGTATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTC
AGCGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGG
ACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCA
GCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGAC
AGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGT
GGTGGAGACTCTCCTGTATAGGTGCGCCTCTTGGAGCCTGGCAGCGGAGT
ACTACACGTAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTACATT
GGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCAAGTT
CCATATCCAGGCCGGCTGCGAGGAACCATCGAGGCCACCGTGCGCAAACG
GAGACTGTGTTTCGCGGGCTTTGATATGCGCATGGAGGACAGCCGCCTCC
CCGAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGCG
GGCAGGAGATCGACTGGGTGTCTCGTCTAGGAGAGGCCCTCGTGGCCTTC
AACATGGGAGACGAAAAGGAAGGGGGGTAAATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTACAACACGGTCGAGGACGGGACGGCATGGTTCATG
ATGAAATGGCACAGGCAG

protein sequence of EsuBft1064_11a-0001

>EsuBft1064_11 ID=EsuBft1064_11|Name=EsuBft1064_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAERKTTVVTDAEALW
AMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIICMLPKG
IEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYR
RNSASMYDRRRANRQLKIRLLQAEVVETLLYRCASWSLAAEYYT

mRNA from alignment at Scaffold_339:26246..27263+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1064_11a-0001 ID=EsuBft1064_11a-0001|Name=EsuBft1064_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1018bp|location=Sequence derived from alignment at Scaffold_339:26246..27263+ (Ectocarpus subulatus male Bft15b)
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGAGAGGAAGACGACGG
TGGTGACGGACGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCG
GCCATCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCAT
CGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGG
AGATCATATGTATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTC
AGCGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGG
ACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCA
GCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGAC
AGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGT
GGTGGAGACTCTCCTGTATAGGTGCGCCTCTTGGAGCCTGGCAGCGGAGT
ACTACACGTAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTACATT
GGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCAAGTT
CCATATCCAGGCCGGCTGCGAGGAACCATCGAGGCCACCGTGCGCAAACG
GAGACTGTGTTTCGCGGGCTTTGATATGCGCATGGAGGACAGCCGCCTCC
CCGAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGCG
GGCAGGAGATCGACTGGGTGTCTCGTCTAGGAGAGGCCCTCGTGGCCTTC
AACATGGGAGACGAAAAGGAAGGGGGGTAAATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTACAACACGGTCGAGGACGGGACGGCATGGTTCATG
ATGAAATGGCACAGGCAG

Coding sequence (CDS) from alignment at Scaffold_339:26246..27263+

>EsuBft1064_11a-0001 ID=EsuBft1064_11a-0001|Name=EsuBft1064_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_339:26246..27263+ (Ectocarpus subulatus male Bft15b)
ATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGGCA
GGTCGGCGGAGAGGAAGACGACGGTGGTGACGGACGCGGAGGCCTTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTATCGGAGCCAAAGACGGAGATCATATGTATGCTGCCGAAAGGG
ATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCA
GACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGG
CCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGC
CGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAGCTCAA
GATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATAGGTGCG
CCTCTTGGAGCCTGGCAGCGGAGTACTACACGTAG