EsuBft1063_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1063_9a-0001
Unique NameEsuBft1063_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:200888..203553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog5759.rna_EHI_022950-1
ProteomeIdEsuBft1063_9
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl554915|Amoebozoa
Length147
Hectar predicted targeting categoryother localisation
Evalue0.000192
EggNOG OGsCOG0484@1|root,KOG0712@2759|Eukaryota,3XBUA@554915|Amoebozoa
Ec32 ortholog descriptionHSP40/DnaJ peptide-binding
Ec32 orthologEc-05_005820.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K03686
DescriptionDnaJ central domain
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_9aEsuBft1063_9aEctocarpus subulatus male Bft15bgeneScaffold_523 200888..203553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_9a-0001EsuBft1063_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 200888..203553 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_9a-0001-exonagat-exon-11524Ectocarpus subulatus male Bft15bexonScaffold_523 200888..200915 -
EsuBft1063_9a-0001-exonagat-exon-11522Ectocarpus subulatus male Bft15bexonScaffold_523 200983..201418 -
EsuBft1063_9a-0001-exonEsuBft1063_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 201887..202556 -
EsuBft1063_9a-0001-exonagat-exon-11525Ectocarpus subulatus male Bft15bexonScaffold_523 202855..202990 -
EsuBft1063_9a-0001-exonagat-exon-11523Ectocarpus subulatus male Bft15bexonScaffold_523 203354..203553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_9a-0001-cdsEsuBft1063_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 200888..200915 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1063_9a-0001 ID=EsuBft1063_9a-0001|Name=EsuBft1063_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1470bp|location=Sequence derived from alignment at Scaffold_523:200888..203553- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGTTCCGCCCTCCGTTCAACAAACATCGTCCAACTCGGGTTCTGC
TGATATCCCTGCAACTGCTAGCTCTAACAAGGAGGAGGTTGCCGGACATG
GGTATCGGTGGGAGGTGCTGGCGTGCGTTGGCTTTCCACTTCCAAAGGCC
TTTGACGTGGTGTCTTCCCTTGGTGGTCTCGGGCATTTCGAGCTGTCTAG
GGGAGCTCTCGGAAGGGGCCTGACAGGTCTCCAAGAGGCGACCGTGAAGC
AGAGCACGGACATAGAAGGGTTGGTCTCCATCACCCTGGAAGAGGCATTC
GTGGGGAAGGATGTCGCTGTCGACATCCGGCGACGATCCGCGAAACCCCA
AACGCTCATATCCCCCATATGCTCGCTGTTTTTCAAGGTCCCATGTCCAG
AATGCCACGGCTATGGAGCGGCCTCATTTGTTCCTTGTGACCGGTGCGGT
GGGTCAGGCAGACGCATCCACGATATTAGCCTCAGCAGCGAGGACACCTC
TCCAAGAAGCATTCCAGTCATGGAACACGGTGCCAGAGGTTGCGGCAGCA
GCGGCGAAAGCGGAGAAGGCGACCCCAATACGAACTCAACCGGCAGCGCT
TGTGTCGCCCACGAGTGTGGCCATCGTGATGGGCTCGGAGGAGGTGTCTA
TCGTGGTAGTGGGTGCTACGCAGGGCATGTCAGTTGCAACGGAGAATCAG
ACCCTCCGTGTCGCCGCCCTGAGGGAGAAGACGTGTGTGTGGAGCGGGCT
GCCACGGACGACAACAATGACGAAGGGGGAGCCGCTGAAAGACTCAGGCT
GACGCGCACCGCTGACTGCGCGAGGTGTGGGGGCTCCGGCATGGTGCCCA
CCCCGTCTGCAGACGGGGGGCCTCCGCTATTCTGCTCGCGATGTACGGGG
GCGAGGTTCGTGGAGGAGACGGTGAACTTGGTTCTGACAATCCCTGCCGG
GGTAAAAAACGGCCACACAGAGGTTTACCGAGGCGAGGGCCACGTTGACT
TCGGCGATCTGCTTGATACGCAAAAGCCGAGGGCATCGAGTGAGGAGGCC
AATATGAGTGATGCGGACGCCGGCAAGGCCTCAGGTTCATCACCCGCTCC
TCCTCCTTGTTCTTCCCGTCCTTACGAAGGCGCCTCGTCCATTAAATCTC
AGTGGGCTTCACCCACCTTCTCTCCTTCTTCCTCCTCTTCACCCTTTTCC
CCTACCACTTCACCCGGGTCTTCAGAATCGACACCTGGTGGTTTCTACGC
TTCACCTCCAAAAACAAAATTGAAAACTGGTAACTTTCGGCTGACAGTTG
ATGTCTTGCCCCACCCAGTTTTTTCACCCGCGGAGGAAGGAGGGGCAGAC
CTGCACGCAACGGTTTCCATTTCCGTGGCGGAGGCATTGACGGGCTTTAC
CCGGGAAATCACCGGCTTGGACGGCTCCATTGTGACGGTCAGGCTGCAGT
GGTACCGATGGCGATGGTGA
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protein sequence of EsuBft1063_9a-0001

>EsuBft1063_9 ID=EsuBft1063_9|Name=EsuBft1063_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=489bp
MTVPPSVQQTSSNSGSADIPATASSNKEEVAGHGYRWEVLACVGFPLPKA
FDVVSSLGGLGHFELSRGALGRGLTGLQEATVKQSTDIEGLVSITLEEAF
VGKDVAVDIRRRSAKPQTLISPICSLFFKVPCPECHGYGAASFVPCDRCG
GSGRRIHDISLSSEDTSPRSIPVMEHGARGCGSSGESGEGDPNTNSTGSA
CVAHECGHRDGLGGGVYRGSGCYAGHVSCNGESDPPCRRPEGEDVCVERA
ATDDNNDEGGAAERLRLTRTADCARCGGSGMVPTPSADGGPPLFCSRCTG
ARFVEETVNLVLTIPAGVKNGHTEVYRGEGHVDFGDLLDTQKPRASSEEA
NMSDADAGKASGSSPAPPPCSSRPYEGASSIKSQWASPTFSPSSSSSPFS
PTTSPGSSESTPGGFYASPPKTKLKTGNFRLTVDVLPHPVFSPAEEGGAD
LHATVSISVAEALTGFTREITGLDGSIVTVRLQWYRWRW
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mRNA from alignment at Scaffold_523:200888..203553-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1063_9a-0001 ID=EsuBft1063_9a-0001|Name=EsuBft1063_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2666bp|location=Sequence derived from alignment at Scaffold_523:200888..203553- (Ectocarpus subulatus male Bft15b)
ATGACAGTTCCGCCCTCCGTTCAACAAACATCGTCCAACTCGGGTTCTGC
TGATATCCCTGCAACTGCTAGCTCTAACAAGGAGGAGGTTGCCGGACATG
GGTATCGGTGGGAGGTGCTGGCGTGCGTTGGCTTTCCACTTCCAAAGGCC
TTTGACGTGGTGTCTTCCCTTGGTGGTCTCGGGCATTTCGAGCTGTCTAG
GTATGAGAATCGTGAAGTCTATCTGTCTAGTTAGGTAGCTCATTTTGATT
GTTTCTTCGTGAAGAAAAAAGAATCGTACTTGCGTTATCTGGAAAGGGAA
GTACGAATATGAACAATTCGTTCAAGGACGAGTAGTCCCCCGTTTCGCTC
GAACCGCCGGTTGCCGCGCCTTGTGTGCTCGACAGTCGGATCGGCGTCAT
GTAGCAGCCTCTCCCCCGCATCGGCACTCCACCCTTCCTCTATTGTCGTA
ACCACCTCATTTAGGACTCGACAGCCACGTGTGTGGCCGTAGTGTATCGC
ACGTCTGACTCTGGAAACGTGCCATTTTGCTGGCCCGCGCGGCGCTCCCA
CTGGCACATGAAGGGGAGCTCTCGGAAGGGGCCTGACAGGTCTCCAAGAG
GCGACCGTGAAGCAGAGCACGGACATAGAAGGGTTGGTCTCCATCACCCT
GGAAGAGGCATTCGTGGGGAAGGATGTCGCTGTCGACATCCGGCGACGAG
TGAGTGATAAAGGGGGAGGATTATCGGTTAAGATTCTTTCTGCGTTGTCG
AAATAGGGCGATTACGGTTCGAATTTATGTCGTCGCATGAGAGCTGCGTC
GTACAAAACGAGCAGTTGACAGAGATTGCTCTTGTCATTGGAGGCGCTTG
TGGCTCGAGCGAACTGCGAGTCTTGCTGGTCAGAGCTACCGTGAAGCGCG
CCGTCGTCCACTAGTGGGTGCGTCGGTCTAAGAAGCCGGAAATAATTGAA
AGTTTCGTTTTGCGTGGCATCCAGGGGTTCATTCTCTCGATCAATAGTCC
GCGAAACCCCAAACGCTCATATCCCCCATATGCTCGCTGTTTTTCAAGGT
CCCATGTCCAGAATGCCACGGCTATGGAGCGGCCTCATTTGTTCCTTGTG
ACCGGTGCGGTGGGTCAGGCAGACGCATCCACGATATTAGCCTCAGCAGC
GAGGACACCTCTCCAAGAAGCATTCCAGTCATGGAACACGGTGCCAGAGG
TTGCGGCAGCAGCGGCGAAAGCGGAGAAGGCGACCCCAATACGAACTCAA
CCGGCAGCGCTTGTGTCGCCCACGAGTGTGGCCATCGTGATGGGCTCGGA
GGAGGTGTCTATCGTGGTAGTGGGTGCTACGCAGGGCATGTCAGTTGCAA
CGGAGAATCAGACCCTCCGTGTCGCCGCCCTGAGGGAGAAGACGTGTGTG
TGGAGCGGGCTGCCACGGACGACAACAATGACGAAGGGGGAGCCGCTGAA
AGACTCAGGCTGACGCGCACCGCTGACTGCGCGAGGTGTGGGGGCTCCGG
CATGGTGCCCACCCCGTCTGCAGACGGGGGGCCTCCGCTATTCTGCTCGC
GATGTACGGGGGCGAGGTTCGTGGAGGAGACGGTGAACTTGGTTCTGACA
ATCCCTGCCGGGGTAAAAAACGGCCACACAGAGGTTTACCGAGGCGAGGG
CCACGTTGACTTCGGCGGTAAGTCTCATCACCCGTCTGTGCCCTCCAACC
GACCCATATTATGAGGAAATTGCGAGATAGACACGGGAACACGGTTACTG
GTCTCGAGCGTACATGGGCGCACGAGCATTGCTGGTCACAAGAGGTGATG
TCGAAGGGTTGTGCTGGGGAGCTCCACTTCGGTTTACTCAGTCGTTCAAT
GTTGGCCTTCCAACCTGAACCATGTTCCCACCGGTTTCACTTCACATCCC
AGCAACACAGGCTCACGCGCGCGTCGACTTGCTCCACTATGCGCGTTTTG
GGTTCCAAGAGGGGACGAGGGAAGGCAGCCACCCTTGCTCAGACGTTCTT
GTGCCCTCGCACATCGAGTATCCCCGTATTTTTCGCCCATGTTTCCTGCC
GCATGAGCATTGCTCCTTGCTAGTGGCGCTGACCCATGCTTCCTTCCCCG
GCGTACCATCGTGCCATTTCCACGACCTTCCTCAGATCTGCTTGATACGC
AAAAGCCGAGGGCATCGAGTGAGGAGGCCAATATGAGTGATGCGGACGCC
GGCAAGGCCTCAGGTTCATCACCCGCTCCTCCTCCTTGTTCTTCCCGTCC
TTACGAAGGCGCCTCGTCCATTAAATCTCAGTGGGCTTCACCCACCTTCT
CTCCTTCTTCCTCCTCTTCACCCTTTTCCCCTACCACTTCACCCGGGTCT
TCAGAATCGACACCTGGTGGTTTCTACGCTTCACCTCCAAAAACAAAATT
GAAAACTGGTAACTTTCGGCTGACAGTTGATGTCTTGCCCCACCCAGTTT
TTTCACCCGCGGAGGAAGGAGGGGCAGACCTGCACGCAACGGTTTCCATT
TCCGTGGCGGAGGCATTGACGGGCTTTACCCGGGAAATCACCGGCTTGGA
CGGCTCCATTGTGACGGTCAGGTACGACTGCACATGCTTAATGGTGACCT
TGGAATGCTGTTCCACACTGTAAAACATTGTGGGTCAGGCTGCAGTGGTA
CCGATGGCGATGGTGA
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Coding sequence (CDS) from alignment at Scaffold_523:200888..203553-

>EsuBft1063_9a-0001 ID=EsuBft1063_9a-0001|Name=EsuBft1063_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1470bp|location=Sequence derived from alignment at Scaffold_523:200888..203553- (Ectocarpus subulatus male Bft15b)
ATGACAGTTCCGCCCTCCGTTCAACAAACATCGTCCAACTCGGGTTCTGC
TGATATCCCTGCAACTGCTAGCTCTAACAAGGAGGAGGTTGCCGGACATG
GGTATCGGTGGGAGGTGCTGGCGTGCGTTGGCTTTCCACTTCCAAAGGCC
TTTGACGTGGTGTCTTCCCTTGGTGGTCTCGGGCATTTCGAGCTGTCTAG
GGGAGCTCTCGGAAGGGGCCTGACAGGTCTCCAAGAGGCGACCGTGAAGC
AGAGCACGGACATAGAAGGGTTGGTCTCCATCACCCTGGAAGAGGCATTC
GTGGGGAAGGATGTCGCTGTCGACATCCGGCGACGATCCGCGAAACCCCA
AACGCTCATATCCCCCATATGCTCGCTGTTTTTCAAGGTCCCATGTCCAG
AATGCCACGGCTATGGAGCGGCCTCATTTGTTCCTTGTGACCGGTGCGGT
GGGTCAGGCAGACGCATCCACGATATTAGCCTCAGCAGCGAGGACACCTC
TCCAAGAAGCATTCCAGTCATGGAACACGGTGCCAGAGGTTGCGGCAGCA
GCGGCGAAAGCGGAGAAGGCGACCCCAATACGAACTCAACCGGCAGCGCT
TGTGTCGCCCACGAGTGTGGCCATCGTGATGGGCTCGGAGGAGGTGTCTA
TCGTGGTAGTGGGTGCTACGCAGGGCATGTCAGTTGCAACGGAGAATCAG
ACCCTCCGTGTCGCCGCCCTGAGGGAGAAGACGTGTGTGTGGAGCGGGCT
GCCACGGACGACAACAATGACGAAGGGGGAGCCGCTGAAAGACTCAGGCT
GACGCGCACCGCTGACTGCGCGAGGTGTGGGGGCTCCGGCATGGTGCCCA
CCCCGTCTGCAGACGGGGGGCCTCCGCTATTCTGCTCGCGATGTACGGGG
GCGAGGTTCGTGGAGGAGACGGTGAACTTGGTTCTGACAATCCCTGCCGG
GGTAAAAAACGGCCACACAGAGGTTTACCGAGGCGAGGGCCACGTTGACT
TCGGCGATCTGCTTGATACGCAAAAGCCGAGGGCATCGAGTGAGGAGGCC
AATATGAGTGATGCGGACGCCGGCAAGGCCTCAGGTTCATCACCCGCTCC
TCCTCCTTGTTCTTCCCGTCCTTACGAAGGCGCCTCGTCCATTAAATCTC
AGTGGGCTTCACCCACCTTCTCTCCTTCTTCCTCCTCTTCACCCTTTTCC
CCTACCACTTCACCCGGGTCTTCAGAATCGACACCTGGTGGTTTCTACGC
TTCACCTCCAAAAACAAAATTGAAAACTGGTAACTTTCGGCTGACAGTTG
ATGTCTTGCCCCACCCAGTTTTTTCACCCGCGGAGGAAGGAGGGGCAGAC
CTGCACGCAACGGTTTCCATTTCCGTGGCGGAGGCATTGACGGGCTTTAC
CCGGGAAATCACCGGCTTGGACGGCTCCATTGTGACGGTCAGGCTGCAGT
GGTACCGATGGCGATGGTGA
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