EsuBft1063_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1063_5a-0001
Unique NameEsuBft1063_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:176929..177434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog157072.XP_008861758.1
ProteomeIdEsuBft1063_5
Protein domainsIPR011990
Protein domainsSSF48452
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length36
Hectar predicted targeting categoryother localisation
Evalue6.08e-05
EggNOG OGs2CXZI@1|root,2S0X6@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_5aEsuBft1063_5aEctocarpus subulatus male Bft15bgeneScaffold_523 176929..177434 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_5a-0001-exonagat-exon-11500Ectocarpus subulatus male Bft15bexonScaffold_523 176929..177124 -
EsuBft1063_5a-0001-exonEsuBft1063_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 177265..177434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_5a-0001-cdsEsuBft1063_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 176929..177124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_5a-0001EsuBft1063_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 176929..177434 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1063_5a-0001 ID=EsuBft1063_5a-0001|Name=EsuBft1063_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=366bp|location=Sequence derived from alignment at Scaffold_523:176929..177434- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTATCTGACCAATTCGGCGAAACCGACCAACAGTGCTTCCGCTCG
CGATTCTCAGATTGAAGAGAGAACTTGGCAGGCACTGGTGGCGTACCGCT
CGAAGGTCCTAACGCGGGAGCTCGGGGGGAAAGGAAAGGAACTCGACACT
GCCGAAGACTATCTCGTGCGAGCCTGGGAAATTCTCGAGAGCCGGCAAGG
GAGAAACGACCCTGACGTGGGAGCAGCCTGCATTTCGCTTGGAAACCTTG
CGGTAATTCGCCGCAGGTTGAACGAGGCTATCGACTGGTTCCGAAGGGCT
CTGGAAACCTTCGAGGTGAAGAGGTTACGTCCGCAAAGCCCATTTGCGGA
ACCTGTAACCCATTGA
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protein sequence of EsuBft1063_5a-0001

>EsuBft1063_5 ID=EsuBft1063_5|Name=EsuBft1063_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=121bp
MMYLTNSAKPTNSASARDSQIEERTWQALVAYRSKVLTRELGGKGKELDT
AEDYLVRAWEILESRQGRNDPDVGAACISLGNLAVIRRRLNEAIDWFRRA
LETFEVKRLRPQSPFAEPVTH
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mRNA from alignment at Scaffold_523:176929..177434-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1063_5a-0001 ID=EsuBft1063_5a-0001|Name=EsuBft1063_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=506bp|location=Sequence derived from alignment at Scaffold_523:176929..177434- (Ectocarpus subulatus male Bft15b)
ATGATGTATCTGACCAATTCGGCGAAACCGACCAACAGTGCTTCCGCTCG
CGATTCTCAGATTGAAGAGAGAACTTGGCAGGCACTGGTGGCGTACCGCT
CGAAGGTCCTAACGCGGGAGCTCGGGGGGAAAGGAAAGGAACTCGACACT
GCCGAAGACTATCTCGTGCGGTAAGCCTGTTTTTAGCGAGAGGCGACCGC
TCTGCAGCCACACTTCACATTCAAACTTGGATCACGGTATCACTGAATCT
TGCTCCATACCTGTTGTTGCAACAGAACTCATGAGATTTGAAACGTTGTG
TGTATTCCAGAGCCTGGGAAATTCTCGAGAGCCGGCAAGGGAGAAACGAC
CCTGACGTGGGAGCAGCCTGCATTTCGCTTGGAAACCTTGCGGTAATTCG
CCGCAGGTTGAACGAGGCTATCGACTGGTTCCGAAGGGCTCTGGAAACCT
TCGAGGTGAAGAGGTTACGTCCGCAAAGCCCATTTGCGGAACCTGTAACC
CATTGA
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Coding sequence (CDS) from alignment at Scaffold_523:176929..177434-

>EsuBft1063_5a-0001 ID=EsuBft1063_5a-0001|Name=EsuBft1063_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=366bp|location=Sequence derived from alignment at Scaffold_523:176929..177434- (Ectocarpus subulatus male Bft15b)
ATGATGTATCTGACCAATTCGGCGAAACCGACCAACAGTGCTTCCGCTCG
CGATTCTCAGATTGAAGAGAGAACTTGGCAGGCACTGGTGGCGTACCGCT
CGAAGGTCCTAACGCGGGAGCTCGGGGGGAAAGGAAAGGAACTCGACACT
GCCGAAGACTATCTCGTGCGAGCCTGGGAAATTCTCGAGAGCCGGCAAGG
GAGAAACGACCCTGACGTGGGAGCAGCCTGCATTTCGCTTGGAAACCTTG
CGGTAATTCGCCGCAGGTTGAACGAGGCTATCGACTGGTTCCGAAGGGCT
CTGGAAACCTTCGAGGTGAAGAGGTTACGTCCGCAAAGCCCATTTGCGGA
ACCTGTAACCCATTGA
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