EsuBft1063_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1063_3a-0001
Unique NameEsuBft1063_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:165640..165873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FKD3
ProteomeIdEsuBft1063_3
Protein domainsPTHR21514
Protein domainsIPR013809
Protein domainsIPR008942
Ownerapollo_admin@sb-roscoff.fr
Noteap-4 complex accessory subunit tepsin os:xenopus laevis gn:enthd2 pe:2 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length234
Hectar predicted targeting categoryother localisation
Evalue4.51e-35
EggNOG OGs28NHQ@1|root,2QV38@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameENTHD2
KEGG koko:K00784
KEGG Pathwayko03013,map03013
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016604,GO:0016607,GO:0019898,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030659,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032588,GO:0034622,GO:0035459,GO:0035652,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051179,GO:0051234,GO:0065003,GO:0070013,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098805
EC3.1.26.11
DescriptionENTH domain
COG categoryS
BRITEko00000,ko00001,ko01000,ko03016
Cross References
External references for this mRNA
DatabaseAccession
GO0005737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_3aEsuBft1063_3aEctocarpus subulatus male Bft15bgeneScaffold_523 165640..165873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_3a-0001-exonEsuBft1063_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 165640..165873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_3a-0001-cdsEsuBft1063_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 165640..165834 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_3a-0001-exonagat-five_prime_utr-383Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 165835..165873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1063_3a-0001EsuBft1063_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 165640..165834 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1063_3a-0001 ID=EsuBft1063_3a-0001|Name=EsuBft1063_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=234bp|location=Sequence derived from alignment at Scaffold_523:165640..165873- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGGAACATTGCCGAGGGCAGAGAACAGCCAGGATACAATGGACCGACC
AGTGGTTGCGAGAGCCACTTCAAGTGATGACTCCCCGGTCCCGGGGTACT
TGTACGGAGAAATCGCGCAGATGACGCACGCGAACTTCGAAGGCTGCCGG
CAACTCACAGTCTACCTTCTGGAGCGGATCAAGAAGCCCAACCACAACAT
AAAGTTCAAATGCCTGCGGATCATAAAGGTGTGA
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protein sequence of EsuBft1063_3a-0001

>EsuBft1063_3 ID=EsuBft1063_3|Name=EsuBft1063_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MDRPVVARATSSDDSPVPGYLYGEIAQMTHANFEGCRQLTVYLLERIKKP
NHNIKFKCLRIIKV
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mRNA from alignment at Scaffold_523:165640..165873-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1063_3a-0001 ID=EsuBft1063_3a-0001|Name=EsuBft1063_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=234bp|location=Sequence derived from alignment at Scaffold_523:165640..165873- (Ectocarpus subulatus male Bft15b)
GCTGGAACATTGCCGAGGGCAGAGAACAGCCAGGATACAATGGACCGACC
AGTGGTTGCGAGAGCCACTTCAAGTGATGACTCCCCGGTCCCGGGGTACT
TGTACGGAGAAATCGCGCAGATGACGCACGCGAACTTCGAAGGCTGCCGG
CAACTCACAGTCTACCTTCTGGAGCGGATCAAGAAGCCCAACCACAACAT
AAAGTTCAAATGCCTGCGGATCATAAAGGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_523:165640..165873-

>EsuBft1063_3a-0001 ID=EsuBft1063_3a-0001|Name=EsuBft1063_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_523:165640..165873- (Ectocarpus subulatus male Bft15b)
ATGGACCGACCAGTGGTTGCGAGAGCCACTTCAAGTGATGACTCCCCGGT
CCCGGGGTACTTGTACGGAGAAATCGCGCAGATGACGCACGCGAACTTCG
AAGGCTGCCGGCAACTCACAGTCTACCTTCTGGAGCGGATCAAGAAGCCC
AACCACAACATAAAGTTCAAATGCCTGCGGATCATAAAGGTGTGA
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