EsuBft1062_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1062_2a-0001
Unique Name	EsuBft1062_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_355	contig	Scaffold_355:298508..301163 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1062_2
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	133
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1062_2a	EsuBft1062_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_355 298508..301163 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1062_2a-0001-exon	agat-exon-46149	Ectocarpus subulatus male Bft15b	exon	Scaffold_355 298508..299442 -
EsuBft1062_2a-0001-exon	EsuBft1062_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_355 300721..300976 -
EsuBft1062_2a-0001-exon	agat-exon-46150	Ectocarpus subulatus male Bft15b	exon	Scaffold_355 301021..301163 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1062_2a-0001-exon	agat-three_prime_utr-614	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_355 298508..298653 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1062_2a-0001-cds	EsuBft1062_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_355 298654..299442 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1062_2a-0001	EsuBft1062_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_355 298654..301163 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_355:298508..301163-
coding sequence from alignment at Scaffold_355:298508..301163-

spliced messenger RNA

>EsuBft1062_2a-0001 ID=EsuBft1062_2a-0001|Name=EsuBft1062_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1334bp|location=Sequence derived from alignment at Scaffold_355:298508..301163- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCAGCCATAGCTGGGCCAGCGGCAGCTGGACTAGCGGCGGCTGT
GACCAACCAGGGGGATGTGAACGCACAGCAGTCCTTCTTGGAAAAGACAA
GCACGTCGTCAAGCTCAGTTGGAGGCTTGTCTCCGAACGCGGGGAACTCA
CAAACCTACAGTGGCTACGCGAAGAACACCGAAGCGGCGGTCAGCGAAAG
GGCCAAGGAGCTGACTGACAAGGTCCTCAAGAACAAGCGCGAGCAGTGGC
AAAAGGCGCAGCAGCGATCTGGTGGTGGCAGCAGCAGCGGAGGCGTTAGC
AGGACAGCAGATAGTGCCGTCGCCGACCCTGTTATCCTGGCTTTGAGGGG
TGTCGGGAGAACCCGATCCAGGGTGGTGACAATTCAGCCAGTTGAGCCGG
TTGCCATGATGGGATTGGCGGAGTGGCAGAACGCCATGAAGTGGAAGGAG
AGATTTGGCAAGAGAATCATGGGGACGGGCGGGGTGGTCAGCTTTCTGCG
AAGCTTCTTTCGGGAGAAGGCAGGTAGCGAGGGGGAGGAGGGTATGCGGA
AGTATTTCGCGAAGTGGGCTCCGTACCGCATGCGGAGGGTGCACGTCGAG
TTTTTCGGCATGAAGGAGATATATCGGACAAATTCGGTCCTGGCAGGCAT
AGAGGGTACACGAGACATGTGTCACTTCGCGGGAGCAAACACTCCCAAGT
GGGATGGGTCCACCACGACCGAGGGGCGCGAAGATGACTGCAAGCTGGTA
CGAAAGAGCGAGGGGCGGGTGAGCTTGTCGAGTCAAGAGAAGAGCAGGTT
GCGGGAAGTCAAGGTGTTGGGTGCAGTAGCGAGCAGATGGAAGGGTAAGG
GGGCTGGGTTGCAGGATCCGGTGTCGGGGGAGGAAGACGTGACTTGCAGA
AAGGTGAAACGGACGTACAGGCTCAGGACTCGGCTGGCGTCGTGCTTCTG
CTCGGCGTGCCAGCGTTGCGAGTATGAGCAGTGCTACGTCAGCAAGACGT
ACCCACGTCTCGTTCCCGCATTGCAACAGGGCGAAGTGAAGGAAACGGTG
ATCATGGACACTGGAGGAGCGCCCGTAGACGAAGATAACTCCCGGGGGAT
CCAGTTCGGGAGTAGGAGGAAGGAATGCAAGATGAAGATAATTACTGGGA
CACAATGGCAAGAATGCGAATCTGCTGCTGCGTCATAGATTTGGGAAGAG
CGTGGTAGGAAGGGAGAGCCCAATGTTGTTGCCCGTTTCGGGCTGTGGGC
TGGTTTTTAAGTGATGAGCTTCGTGTATTTGCTTGTGGAGCAGTAGGTGG
GGTTCAAAGCCCGTTTGAGGTACAACTTGGTGGT

protein sequence of EsuBft1062_2a-0001

>EsuBft1062_2 ID=EsuBft1062_2|Name=EsuBft1062_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MSSAIAGPAAAGLAAAVTNQGDVNAQQSFLEKTSTSSSSVGGLSPNAGNS
QTYSGYAKNTEAAVSERAKELTDKVLKNKREQWQKAQQRSGGGSSSGGVS
RTADSAVADPVILALRGVGRTRSRVVTIQPVEPVAMMGLAEWQNAMKWKE
RFGKRIMGTGGVVSFLRSFFREKAGSEGEEGMRKYFAKWAPYRMRRVHVE
FFGMKEIYRTNSVLAGIEGTRDMCHFAGANTPKWDGSTTTEGREDDCKLV
RKSEGRVSLSSQEKSRLREVKVLGAVASRWKGKGAGLQDPVSGEEDVTCR
KVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQQGEVKETV
IMDTGGAPVDEDNSRGIQFGSRRKECKMKIITGTQWQECESAAAS

mRNA from alignment at Scaffold_355:298508..301163-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1062_2a-0001 ID=EsuBft1062_2a-0001|Name=EsuBft1062_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2656bp|location=Sequence derived from alignment at Scaffold_355:298508..301163- (Ectocarpus subulatus male Bft15b)
ATGAGCTCAGCCATAGCTGGGCCAGCGGCAGCTGGACTAGCGGCGGCTGT
GACCAACCAGGGGGATGTGAACGCACAGCAGTCCTTCTTGGAAAAGACAA
GCACGTCGTCAAGCTCAGTTGGAGGCTTGTCTCCGAACGCGGGGTGCTGG
TGACCGCGACACTCGTTGACTCGAAGCACAAGAACAGGAACTCACAAACC
TACAGTGGCTACGCGAAGAACACCGAAGCGGCGGTCAGCGAAAGGGCCAA
GGAGCTGACTGACAAGGTCCTCAAGAACAAGCGCGAGCAGTGGCAAAAGG
CGCAGCAGCGATCTGGTGGTGGCAGCAGCAGCGGAGGCGTTAGCAGGACA
GCAGATAGTGCCGTCGCCGACCCTGTTATCCTGGCTTTGAGGGGTGTCGG
GAGAACCCGATCCAGGGTGGTGACAATTCAGCCAGTTGAGCCGGTGAGAT
GCTAATGTCGCTAGAGGTTTCAGTCAATCAACAGCACAGCAGATAAGTTG
TTGGGGTCTACTTACAGTAGTACACTCATCAATCAACGCATGCGGTAATT
TCGCCGACACACGAATAATTGCACCGAGGGGTTTTTAATTCCACCGAGAG
GATCGAGTTGCATGAAACGTCGCGTAGTTCTACAGCGAGAGCTCGTCTAT
GTCAGCTCCCACGGAAACTAGGCGCCCAATTTGTGTGTGCAAATGGTCTC
CCCATCAGTCGTGCCTTACGCTTATGTATTATTGCGTTGTGCAACGTCGT
ACCCCCCGCCTCCTCGTTCGTCATGTGTGCACACAGACGGCGCCGGTCGA
CTGGCGCCAGCAGTCTACGGAAACTTTTTTCGCGTCCATGGACAGCATGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTTCG
CGGCCACATCTCACTTCAAAGGTTGCCATGATGGGATTGGCGGAGTGGCA
GAACGCCATGAAGTGGAAGGAGAGATTTGGCAAGAGAATCATGGGGACGG
GCGGGGTGGTCAGCTTTCTGCGAAGCTTCTTTCGGGAGAAGGCAGGTAGC
GAGGGGGAGGAGGGTATGCGGAAGTATTTCGCGAAGTGGGCTCCGTACCG
CATGCGGAGGGTGCACGTCGAGTTTTTCGGCATGAAGGAGATATATCGGA
CAAATTCGGTCCTGGCAGGCATAGAGGGTACACGAGACATGTGTCACTTC
GCGGGAGCAAACACTCCCAAGTGGGATGGGTCCACCACGACCGAGGGGCG
CGAAGATGACTGCAAGCTGGTACGAAAGAGCGAGGGGCGGGTGAGCTTGT
CGAGTCAAGAGAAGAGCAGGTTGCGGGAAGTCAAGGTGTTGGGTGCAGTA
GCGAGCAGATGGAAGGGTAAGGGGGCTGGGTTGCAGGATCCGGTGTCGGG
GGAGGAAGACGTGACTTGCAGAAAGGTGAAACGGACGTACAGGCTCAGGA
CTCGGCTGGCGTCGTGCTTCTGCTCGGCGTGCCAGCGTTGCGAGTATGAG
CAGTGCTACGTCAGCAAGACGTACCCACGTCTCGTTCCCGCATTGCAACA
GGGCGAAGTGAAGGAAACGGTGATCATGGACACTGGAGGAGCGCCCGTAG
ACGAAGATAACTCCCGGGGGATCCAGTTCGGGAGTAGGAGGAAGGAATGC
AAGATGAAGATAATTACTGGGACACAATGGCAAGAATGCGAATCTGCTGC
TGCGTCATAGATTTGGGAAGAGCGTGGTAGGAAGGGAGAGCCCAATGTTG
TTGCCCGTTTCGGGCTGTGGGCTGGTTTTTAAGTGATGAGCTTCGTGTAT
TTGCTTGTGGAGCAGTAGGTGGGGTTCAAAGCCCGTTTGAGGTACAACTT
GGTGGT

Coding sequence (CDS) from alignment at Scaffold_355:298508..301163-

>EsuBft1062_2a-0001 ID=EsuBft1062_2a-0001|Name=EsuBft1062_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_355:298508..301163- (Ectocarpus subulatus male Bft15b)
ATGAGCTCAGCCATAGCTGGGCCAGCGGCAGCTGGACTAGCGGCGGCTGT
GACCAACCAGGGGGATGTGAACGCACAGCAGTCCTTCTTGGAAAAGACAA
GCACGTCGTCAAGCTCAGTTGGAGGCTTGTCTCCGAACGCGGGGAACTCA
CAAACCTACAGTGGCTACGCGAAGAACACCGAAGCGGCGGTCAGCGAAAG
GGCCAAGGAGCTGACTGACAAGGTCCTCAAGAACAAGCGCGAGCAGTGGC
AAAAGGCGCAGCAGCGATCTGGTGGTGGCAGCAGCAGCGGAGGCGTTAGC
AGGACAGCAGATAGTGCCGTCGCCGACCCTGTTATCCTGGCTTTGAGGGG
TGTCGGGAGAACCCGATCCAGGGTGGTGACAATTCAGCCAGTTGAGCCGG
TTGCCATGATGGGATTGGCGGAGTGGCAGAACGCCATGAAGTGGAAGGAG
AGATTTGGCAAGAGAATCATGGGGACGGGCGGGGTGGTCAGCTTTCTGCG
AAGCTTCTTTCGGGAGAAGGCAGGTAGCGAGGGGGAGGAGGGTATGCGGA
AGTATTTCGCGAAGTGGGCTCCGTACCGCATGCGGAGGGTGCACGTCGAG
TTTTTCGGCATGAAGGAGATATATCGGACAAATTCGGTCCTGGCAGGCAT
AGAGGGTACACGAGACATGTGTCACTTCGCGGGAGCAAACACTCCCAAGT
GGGATGGGTCCACCACGACCGAGGGGCGCGAAGATGACTGCAAGCTGGTA
CGAAAGAGCGAGGGGCGGGTGAGCTTGTCGAGTCAAGAGAAGAGCAGGTT
GCGGGAAGTCAAGGTGTTGGGTGCAGTAGCGAGCAGATGGAAGGGTAAGG
GGGCTGGGTTGCAGGATCCGGTGTCGGGGGAGGAAGACGTGACTTGCAGA
AAGGTGAAACGGACGTACAGGCTCAGGACTCGGCTGGCGTCGTGCTTCTG
CTCGGCGTGCCAGCGTTGCGAGTATGAGCAGTGCTACGTCAGCAAGACGT
ACCCACGTCTCGTTCCCGCATTGCAACAGGGCGAAGTGAAGGAAACGGTG
ATCATGGACACTGGAGGAGCGCCCGTAGACGAAGATAACTCCCGGGGGAT
CCAGTTCGGGAGTAGGAGGAAGGAATGCAAGATGAAGATAATTACTGGGA
CACAATGGCAAGAATGCGAATCTGCTGCTGCGTCATAG