EsuBft1061_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1061_3a-0001
Unique Name	EsuBft1061_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_172	contig	Scaffold_172:34647..36916 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	654926.Q8QNF1_ESV1K
ProteomeId	EsuBft1061_3
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR23409
Protein domains	IPR012337
Protein domains	IPR012348
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR009078
Protein domains	IPR012336
Protein domains	TRANSMEMBRANE
Protein domains	IPR002109
Protein domains	IPR000358
Owner	apollo_admin@sb-roscoff.fr
Note	ribonucleoside-diphosphate reductase small chain b os:arabidopsis thaliana gn:rnr2b pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	10239\|Viruses
Length	1881
Hectar predicted targeting category	other localisation
Evalue	2.69e-276
EggNOG OGs	4QC2G@10239\|Viruses,4QV3V@35237\|dsDNA viruses no RNA stage
Ec32 ortholog description	EsV-1-128 ribonucleotide reductase
Ec32 ortholog	Ec-06_005570.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonucleotide reductase, small chain
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0012501
GO	0003676
GO	0051726
GO	0045454
GO	0007275
GO	0009186
GO	0009055
GO	0055114
GO	0006260
GO	0006281
GO	0015035

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1061_3a	EsuBft1061_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_172 34647..36916 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1061_3a-0001-exon	agat-exon-53688	Ectocarpus subulatus male Bft15b	exon	Scaffold_172 34647..35279 -
EsuBft1061_3a-0001-exon	EsuBft1061_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_172 35338..35363 -
EsuBft1061_3a-0001-exon	agat-exon-53689	Ectocarpus subulatus male Bft15b	exon	Scaffold_172 35695..36916 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1061_3a-0001-cds	EsuBft1061_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_172 34647..35279 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1061_3a-0001	EsuBft1061_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_172 34647..36916 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_172:34647..36916-
coding sequence from alignment at Scaffold_172:34647..36916-

spliced messenger RNA

>EsuBft1061_3a-0001 ID=EsuBft1061_3a-0001|Name=EsuBft1061_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1881bp|location=Sequence derived from alignment at Scaffold_172:34647..36916- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACCGAGAAAAAAATCCCGCTGTACAAAGTCCTGGGGTGTTCCGC
GTGCGACCAGGATTTCGAGTATCTGCGGAAGAGGGACGTGTCACCCGTGG
TCTACCTTGTCTGTGATGACACGCCCGACATGAAAGAGTTGGTGGAGACG
ACGAGGTGTTCGACCTTTCCCCAGATCTTCGTCGACTCGGTTTTCATTGG
TGGTTTCAGCGATCTGAAGAGGACGGCCATCCACCGCCCCACAGAACTCA
GGAGGAAGGAGATGGACGGCGAAATCGTCGAGCCAATGTGTGTCGAGGAG
GAGGACTTCGACAGGTTCATTCTCTTTAACGGCAAGACCAAGCACGAATA
CGCCGACATTTTTCAACTGTACAAGAAGCAGACCGCTCTGTTCTGGGTCG
TCGAGGAGATCGATCTGTCCGGAGACTCGAAAGACTGGGAAGATGCTTCG
AGCGACGAGAAGCACTTTTTGAAACTTGTGTTGGCGTTTTTCGCGTCGCT
CGACCAGATCGTCATGGAGAACATCGGTCTCAACTTTAAAAACGAGATCG
TGATTCCGCAGATCAGACAGCATTTTGCAATCCAGGAGGCCACGGAAGCA
GCCCACGGCGAGTCGTACTCTCTACTTATTATTCAGACTTACTTCAGGAA
CACTGAAGAGCAGAGACATGTCATGCGATCTATCCAGACGATGCCAATCA
TCGAGAAGGCGCTCTGGGCCGAGAAGTGGATGAACCCCGAAACCGCTTCA
CTCGCGAAGTGGCTGGTCGGCTTCACCTGCCTGGAGGGCGTTCAGTTCAG
TGGTTCGTTCTGCGCCATCTACTGGCTGAAGAAGAGGCAGAAGTTCAAGG
CTCTGTCGTTTGCAAACTCTCTCATCGCCAGAGACGAAGGCCTTCACGCC
ACAGCTTCCGTTTTCATCTACAAGCACCTCGAGAACAAGCTGCTACAAGA
AAGAGTTCATGAAATTTTCAAGCACGCTGTCAGCGTTGAGTGCGAGTTCA
TCTCGTCGGCGCTTCCCGTTGCGCTCATCGGTATCAGCGAGAAGAGCATG
AAAGAGTACATCAACTTTGTGGCGGACTACTGGCTGAACCAGCTGGGGTA
CGACAAGGTGTACGGCTGCGTCAACCCATTCGAGTGGATGGACATGATTT
CTCTCCAGGGAAAGACCAACTTCTTTGAGAATAGGGTGACCGAGTACAGC
AAGCCCAGCATTTTGCTCGACCGAGAGCGATGCAAGGGTAAAGCCATGAG
AGCCTACATTAGACAAGATGCCGGAGTTGTTTTTCAATGTCAGACAACCG
GCCTTCCACCCCGGAAAGCAACCCCGGAGACCTTTGAACAGTACGACTCG
TGCCGGGTGGTGTCCATAGCATGGGTCCTGCGCGACAAGAAAACTGTCTA
CGCCCAGAGGTATTCGGTGGCTGACCCCGGCATTGCGGACGAAAATATCG
GAGCCGAGTTTGTACACGGAATATCGAGAGAAGTCATGGACAAGTATGGC
AACGCAATCAACGTCGTTCTCTCTGACTTTATGGCGGACGTCAACAGGTC
GGACAAGATTGTTGCGCATAATCTCGACTTCGACAGGAGTGTGGTTTCGG
CCGAGTTGTTTAGGATGGGGTCGTCCGACGACGCTCGAAGACTGCTGAGC
TTTAAAAGCTTGTGTACCATGAAGAGCACCACCAACCTCGTGCGAATCCC
GAACTCGTGTGAATCGTACAAGTGGCTGAAGCTAGAGGAACTACATGAAT
TCCTGTTCGGCAATGCATTTGAGAACGCTCACCACGCCATGTGCGACGTC
GACGCGATGGTGAAGTGCTACTTCACACTCTTGGAGAAGCACACCGCAAA
CAAAAAGAAAAAAACAAATCTAGGCGTTTGA

protein sequence of EsuBft1061_3a-0001

>EsuBft1061_3 ID=EsuBft1061_3|Name=EsuBft1061_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=626bp
MFTEKKIPLYKVLGCSACDQDFEYLRKRDVSPVVYLVCDDTPDMKELVET
TRCSTFPQIFVDSVFIGGFSDLKRTAIHRPTELRRKEMDGEIVEPMCVEE
EDFDRFILFNGKTKHEYADIFQLYKKQTALFWVVEEIDLSGDSKDWEDAS
SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEA
AHGESYSLLIIQTYFRNTEEQRHVMRSIQTMPIIEKALWAEKWMNPETAS
LAKWLVGFTCLEGVQFSGSFCAIYWLKKRQKFKALSFANSLIARDEGLHA
TASVFIYKHLENKLLQERVHEIFKHAVSVECEFISSALPVALIGISEKSM
KEYINFVADYWLNQLGYDKVYGCVNPFEWMDMISLQGKTNFFENRVTEYS
KPSILLDRERCKGKAMRAYIRQDAGVVFQCQTTGLPPRKATPETFEQYDS
CRVVSIAWVLRDKKTVYAQRYSVADPGIADENIGAEFVHGISREVMDKYG
NAINVVLSDFMADVNRSDKIVAHNLDFDRSVVSAELFRMGSSDDARRLLS
FKSLCTMKSTTNLVRIPNSCESYKWLKLEELHEFLFGNAFENAHHAMCDV
DAMVKCYFTLLEKHTANKKKKTNLGV

mRNA from alignment at Scaffold_172:34647..36916-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1061_3a-0001 ID=EsuBft1061_3a-0001|Name=EsuBft1061_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2270bp|location=Sequence derived from alignment at Scaffold_172:34647..36916- (Ectocarpus subulatus male Bft15b)
ATGTTCACCGAGAAAAAAATCCCGCTGTACAAAGTCCTGGGGTGTTCCGC
GTGCGACCAGGATTTCGAGTATCTGCGGAAGAGGGACGTGTCACCCGTGG
TCTACCTTGTCTGTGATGACACGCCCGACATGAAAGAGTTGGTGGAGACG
ACGAGGTGTTCGACCTTTCCCCAGATCTTCGTCGACTCGGTTTTCATTGG
TGGTTTCAGCGATCTGAAGAGGACGGCCATCCACCGCCCCACAGAACTCA
GGAGGAAGGAGATGGACGGCGAAATCGTCGAGCCAATGTGTGTCGAGGAG
GAGGACTTCGACAGGTTCATTCTCTTTAACGGCAAGACCAAGCACGAATA
CGCCGACATTTTTCAACTGTACAAGAAGCAGACCGCTCTGTTCTGGGTCG
TCGAGGAGATCGATCTGTCCGGAGACTCGAAAGACTGGGAAGATGCTTCG
AGCGACGAGAAGCACTTTTTGAAACTTGTGTTGGCGTTTTTCGCGTCGCT
CGACCAGATCGTCATGGAGAACATCGGTCTCAACTTTAAAAACGAGATCG
TGATTCCGCAGATCAGACAGCATTTTGCAATCCAGGAGGCCACGGAAGCA
GCCCACGGCGAGTCGTACTCTCTACTTATTATTCAGACTTACTTCAGGAA
CACTGAAGAGCAGAGACATGTCATGCGATCTATCCAGACGATGCCAATCA
TCGAGAAGGCGCTCTGGGCCGAGAAGTGGATGAACCCCGAAACCGCTTCA
CTCGCGAAGTGGCTGGTCGGCTTCACCTGCCTGGAGGGCGTTCAGTTCAG
TGGTTCGTTCTGCGCCATCTACTGGCTGAAGAAGAGGCAGAAGTTCAAGG
CTCTGTCGTTTGCAAACTCTCTCATCGCCAGAGACGAAGGCCTTCACGCC
ACAGCTTCCGTTTTCATCTACAAGCACCTCGAGAACAAGCTGCTACAAGA
AAGAGTTCATGAAATTTTCAAGCACGCTGTCAGCGTTGAGTGCGAGTTCA
TCTCGTCGGCGCTTCCCGTTGCGCTCATCGGTATCAGCGAGAAGAGCATG
AAAGAGTACATCAACTTTGTGGCGGACTACTGGCTGAACCAGCTGGGGTA
CGACAAGGTGTACGGCTGCGTCAACCCATTCGAGTGGATGGACATGATTT
CTCTCCAGGGAAAGACCAACTTCTTTGAGAATAGGGTGACCGAGTACAGC
AAGCCCAGCATTTTGCTCGACCGTGAGAAGCAGCAGTTTTGTACGGATGC
GGGCTTTTGAAATGTAAAGGTATTGTTTTCCGGGTAGACATGGCAACGGC
GAAGAAATAAGTGTTGACGTATTGATGTAAAGAAGATACACGGGTAAAAG
TGAGATTTAACAAAAAAACACCACTTCGTGACATTGTGGAAAACCTGAAG
ACTCAGCAGACACAGCTCGTCCAGTCTTTCGAAGGAGACCAGGACACGTC
TTGCCAGCGCATTTCCGATGCCCTTTCGGACCTAGAACTCTACGCGGCGA
AACTGCAGACAATTGTCCGGAGACTCGACAACATCACGGAAACTCTCGTG
CAGGAGAGCGATGCAAGGGTAAAGCCATGGTACGTTAGAATATTTTGCCC
CTAAGTTCGTCGCAACGCTCTCAAAAATAATGTGTAGAGAGCCTACATTA
GACAAGATGCCGGAGTTGTTTTTCAATGTCAGACAACCGGCCTTCCACCC
CGGAAAGCAACCCCGGAGACCTTTGAACAGTACGACTCGTGCCGGGTGGT
GTCCATAGCATGGGTCCTGCGCGACAAGAAAACTGTCTACGCCCAGAGGT
ATTCGGTGGCTGACCCCGGCATTGCGGACGAAAATATCGGAGCCGAGTTT
GTACACGGAATATCGAGAGAAGTCATGGACAAGTATGGCAACGCAATCAA
CGTCGTTCTCTCTGACTTTATGGCGGACGTCAACAGGTCGGACAAGATTG
TTGCGCATAATCTCGACTTCGACAGGAGTGTGGTTTCGGCCGAGTTGTTT
AGGATGGGGTCGTCCGACGACGCTCGAAGACTGCTGAGCTTTAAAAGCTT
GTGTACCATGAAGAGCACCACCAACCTCGTGCGAATCCCGAACTCGTGTG
AATCGTACAAGTGGCTGAAGCTAGAGGAACTACATGAATTCCTGTTCGGC
AATGCATTTGAGAACGCTCACCACGCCATGTGCGACGTCGACGCGATGGT
GAAGTGCTACTTCACACTCTTGGAGAAGCACACCGCAAACAAAAAGAAAA
AAACAAATCTAGGCGTTTGA

Coding sequence (CDS) from alignment at Scaffold_172:34647..36916-

>EsuBft1061_3a-0001 ID=EsuBft1061_3a-0001|Name=EsuBft1061_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1881bp|location=Sequence derived from alignment at Scaffold_172:34647..36916- (Ectocarpus subulatus male Bft15b)
ATGTTCACCGAGAAAAAAATCCCGCTGTACAAAGTCCTGGGGTGTTCCGC
GTGCGACCAGGATTTCGAGTATCTGCGGAAGAGGGACGTGTCACCCGTGG
TCTACCTTGTCTGTGATGACACGCCCGACATGAAAGAGTTGGTGGAGACG
ACGAGGTGTTCGACCTTTCCCCAGATCTTCGTCGACTCGGTTTTCATTGG
TGGTTTCAGCGATCTGAAGAGGACGGCCATCCACCGCCCCACAGAACTCA
GGAGGAAGGAGATGGACGGCGAAATCGTCGAGCCAATGTGTGTCGAGGAG
GAGGACTTCGACAGGTTCATTCTCTTTAACGGCAAGACCAAGCACGAATA
CGCCGACATTTTTCAACTGTACAAGAAGCAGACCGCTCTGTTCTGGGTCG
TCGAGGAGATCGATCTGTCCGGAGACTCGAAAGACTGGGAAGATGCTTCG
AGCGACGAGAAGCACTTTTTGAAACTTGTGTTGGCGTTTTTCGCGTCGCT
CGACCAGATCGTCATGGAGAACATCGGTCTCAACTTTAAAAACGAGATCG
TGATTCCGCAGATCAGACAGCATTTTGCAATCCAGGAGGCCACGGAAGCA
GCCCACGGCGAGTCGTACTCTCTACTTATTATTCAGACTTACTTCAGGAA
CACTGAAGAGCAGAGACATGTCATGCGATCTATCCAGACGATGCCAATCA
TCGAGAAGGCGCTCTGGGCCGAGAAGTGGATGAACCCCGAAACCGCTTCA
CTCGCGAAGTGGCTGGTCGGCTTCACCTGCCTGGAGGGCGTTCAGTTCAG
TGGTTCGTTCTGCGCCATCTACTGGCTGAAGAAGAGGCAGAAGTTCAAGG
CTCTGTCGTTTGCAAACTCTCTCATCGCCAGAGACGAAGGCCTTCACGCC
ACAGCTTCCGTTTTCATCTACAAGCACCTCGAGAACAAGCTGCTACAAGA
AAGAGTTCATGAAATTTTCAAGCACGCTGTCAGCGTTGAGTGCGAGTTCA
TCTCGTCGGCGCTTCCCGTTGCGCTCATCGGTATCAGCGAGAAGAGCATG
AAAGAGTACATCAACTTTGTGGCGGACTACTGGCTGAACCAGCTGGGGTA
CGACAAGGTGTACGGCTGCGTCAACCCATTCGAGTGGATGGACATGATTT
CTCTCCAGGGAAAGACCAACTTCTTTGAGAATAGGGTGACCGAGTACAGC
AAGCCCAGCATTTTGCTCGACCGAGAGCGATGCAAGGGTAAAGCCATGAG
AGCCTACATTAGACAAGATGCCGGAGTTGTTTTTCAATGTCAGACAACCG
GCCTTCCACCCCGGAAAGCAACCCCGGAGACCTTTGAACAGTACGACTCG
TGCCGGGTGGTGTCCATAGCATGGGTCCTGCGCGACAAGAAAACTGTCTA
CGCCCAGAGGTATTCGGTGGCTGACCCCGGCATTGCGGACGAAAATATCG
GAGCCGAGTTTGTACACGGAATATCGAGAGAAGTCATGGACAAGTATGGC
AACGCAATCAACGTCGTTCTCTCTGACTTTATGGCGGACGTCAACAGGTC
GGACAAGATTGTTGCGCATAATCTCGACTTCGACAGGAGTGTGGTTTCGG
CCGAGTTGTTTAGGATGGGGTCGTCCGACGACGCTCGAAGACTGCTGAGC
TTTAAAAGCTTGTGTACCATGAAGAGCACCACCAACCTCGTGCGAATCCC
GAACTCGTGTGAATCGTACAAGTGGCTGAAGCTAGAGGAACTACATGAAT
TCCTGTTCGGCAATGCATTTGAGAACGCTCACCACGCCATGTGCGACGTC
GACGCGATGGTGAAGTGCTACTTCACACTCTTGGAGAAGCACACCGCAAA
CAAAAAGAAAAAAACAAATCTAGGCGTTTGA