EsuBft1061_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1061_2a-0001
Unique NameEsuBft1061_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_172contigScaffold_172:30621..31982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1061_2
Protein domainsG3DSA
Protein domainsSSF52047
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-118 ribonuclease inhibitor
Ec32 orthologEc-06_005630.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1061_2aEsuBft1061_2aEctocarpus subulatus male Bft15bgeneScaffold_172 30621..31982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1061_2a-0001-exonagat-exon-53687Ectocarpus subulatus male Bft15bexonScaffold_172 30621..31331 -
EsuBft1061_2a-0001-exonEsuBft1061_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_172 31383..31982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1061_2a-0001-cdsEsuBft1061_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_172 30621..31331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1061_2a-0001EsuBft1061_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_172 30621..31982 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1061_2a-0001 ID=EsuBft1061_2a-0001|Name=EsuBft1061_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1311bp|location=Sequence derived from alignment at Scaffold_172:30621..31982- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGTTCTCTTTTGAAAACGGCGTGTACTCTACGCCACCGGAGAC
CTTCCTGGTTAGCGCGTACGGCAACTTTTGCAACTTCTACCGGAGCCTGA
TCACGCACGTCGGCGCCAATGAAGACAGGGACTACTACGCGGCATGGCTA
GAGCAACAACAGCTGAAGCTGGCGAAAGGGTCGGCGCGGAGCCGGAGACG
TTCCATCGACCTTTACACCAGTGGTCGGCCGGCGAGAGACGAAACGTTTA
TCGTGGAACGACTCCTCGAGTCGGTCGACACTCGACTGAGTGACCATCAC
ATTCTCGTGTACACGGACGACATCATGGACGCGATCGAGAGCAACACGTC
GATTGTGGAGGTTTCGGCGTACAGCCAGACAAGCTCGTGTCGGTGCAGAC
TCTTCAACTGCTTCTCGAAAAGGTCTGTGTCCATTACATCGTTGGACCTG
ACTGGGCGGGCTTGTATCGATTCCACTCAAACCATCGCCGACTCCTGCGT
GCACGACCTGAAGAGGTTGTCGCTTTCGACAGGATGTTCTGATCAGGAGA
TGGACGGGCTCACCATAGCCCTGGTGTGCGATGCGGTGGCCGAAGCCGGG
GCCGACGGCCTGATACGTGCGCTCGAGACGTGTCCCATTTCCTCCCTGCG
CATCGACGGCACGATCTTCGACATACCTTGCGTGCCGGGAATGGTGCGCG
TTTTGCCCGAGCTGCAAGCGACCGACGTCAAGCTCACGCAGTGTGACTTT
GATAATTGGGGGAAACCCGTGTTCGATGCATTGTTTTCAAACGAGAACAT
ACGGTGGCTCGGCGTCTCCTCCACCAAGATCGGCGATGGGAGCGTCGGCG
CGCTGGTGGACATGGTGACGCGCGGAACGCTGACTCGGCTGGCTATTGGC
AACTATGGCATGGGGAGAGGGGGCATCCGTCGCGTTTTGGAGGCGACGAC
GCACGCTGGCAGCAACGTGGTGTTCATCAGCATCTTCGACAACGACATTG
ACGTTCCATCCATCTTCGAGGGATTGGGCAAAACTTCGCTGACGGGAATG
CACGTCGGCGAACTGAGTAACTGCAACACAGCGATCGCTAACTTCGTGGC
CGACACGCAGTGTGACATTGACACCAGTGACGCCGACGACTGCTACAACG
GCGGGGGTGGTGTGTTTCCCTGGCGCACGGAGTCACGCGTAGTTTATGTC
ACAGGAGGAGTATTTGGAGAGTTGATAATTAAATACTTTCTACGACACAC
TTCTTGTCATCGGAAACAAAACTACTCCCTTATTGATACTCTACGCCGCC
AATGGAAATAG
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protein sequence of EsuBft1061_2a-0001

>EsuBft1061_2 ID=EsuBft1061_2|Name=EsuBft1061_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=436bp
MSAFSFENGVYSTPPETFLVSAYGNFCNFYRSLITHVGANEDRDYYAAWL
EQQQLKLAKGSARSRRRSIDLYTSGRPARDETFIVERLLESVDTRLSDHH
ILVYTDDIMDAIESNTSIVEVSAYSQTSSCRCRLFNCFSKRSVSITSLDL
TGRACIDSTQTIADSCVHDLKRLSLSTGCSDQEMDGLTIALVCDAVAEAG
ADGLIRALETCPISSLRIDGTIFDIPCVPGMVRVLPELQATDVKLTQCDF
DNWGKPVFDALFSNENIRWLGVSSTKIGDGSVGALVDMVTRGTLTRLAIG
NYGMGRGGIRRVLEATTHAGSNVVFISIFDNDIDVPSIFEGLGKTSLTGM
HVGELSNCNTAIANFVADTQCDIDTSDADDCYNGGGGVFPWRTESRVVYV
TGGVFGELIIKYFLRHTSCHRKQNYSLIDTLRRQWK
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mRNA from alignment at Scaffold_172:30621..31982-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1061_2a-0001 ID=EsuBft1061_2a-0001|Name=EsuBft1061_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1362bp|location=Sequence derived from alignment at Scaffold_172:30621..31982- (Ectocarpus subulatus male Bft15b)
ATGTCGGCGTTCTCTTTTGAAAACGGCGTGTACTCTACGCCACCGGAGAC
CTTCCTGGTTAGCGCGTACGGCAACTTTTGCAACTTCTACCGGAGCCTGA
TCACGCACGTCGGCGCCAATGAAGACAGGGACTACTACGCGGCATGGCTA
GAGCAACAACAGCTGAAGCTGGCGAAAGGGTCGGCGCGGAGCCGGAGACG
TTCCATCGACCTTTACACCAGTGGTCGGCCGGCGAGAGACGAAACGTTTA
TCGTGGAACGACTCCTCGAGTCGGTCGACACTCGACTGAGTGACCATCAC
ATTCTCGTGTACACGGACGACATCATGGACGCGATCGAGAGCAACACGTC
GATTGTGGAGGTTTCGGCGTACAGCCAGACAAGCTCGTGTCGGTGCAGAC
TCTTCAACTGCTTCTCGAAAAGGTCTGTGTCCATTACATCGTTGGACCTG
ACTGGGCGGGCTTGTATCGATTCCACTCAAACCATCGCCGACTCCTGCGT
GCACGACCTGAAGAGGTTGTCGCTTTCGACAGGATGTTCTGATCAGGAGA
TGGACGGGCTCACCATAGCCCTGGTGTGCGATGCGGTGGCCGAAGCCGGG
GTACTCGAAGTTCTCGGGGTTGGCAACGTGGTCGGAGACTACGAAGAGTA
GGCCGACGGCCTGATACGTGCGCTCGAGACGTGTCCCATTTCCTCCCTGC
GCATCGACGGCACGATCTTCGACATACCTTGCGTGCCGGGAATGGTGCGC
GTTTTGCCCGAGCTGCAAGCGACCGACGTCAAGCTCACGCAGTGTGACTT
TGATAATTGGGGGAAACCCGTGTTCGATGCATTGTTTTCAAACGAGAACA
TACGGTGGCTCGGCGTCTCCTCCACCAAGATCGGCGATGGGAGCGTCGGC
GCGCTGGTGGACATGGTGACGCGCGGAACGCTGACTCGGCTGGCTATTGG
CAACTATGGCATGGGGAGAGGGGGCATCCGTCGCGTTTTGGAGGCGACGA
CGCACGCTGGCAGCAACGTGGTGTTCATCAGCATCTTCGACAACGACATT
GACGTTCCATCCATCTTCGAGGGATTGGGCAAAACTTCGCTGACGGGAAT
GCACGTCGGCGAACTGAGTAACTGCAACACAGCGATCGCTAACTTCGTGG
CCGACACGCAGTGTGACATTGACACCAGTGACGCCGACGACTGCTACAAC
GGCGGGGGTGGTGTGTTTCCCTGGCGCACGGAGTCACGCGTAGTTTATGT
CACAGGAGGAGTATTTGGAGAGTTGATAATTAAATACTTTCTACGACACA
CTTCTTGTCATCGGAAACAAAACTACTCCCTTATTGATACTCTACGCCGC
CAATGGAAATAG
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Coding sequence (CDS) from alignment at Scaffold_172:30621..31982-

>EsuBft1061_2a-0001 ID=EsuBft1061_2a-0001|Name=EsuBft1061_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1311bp|location=Sequence derived from alignment at Scaffold_172:30621..31982- (Ectocarpus subulatus male Bft15b)
ATGTCGGCGTTCTCTTTTGAAAACGGCGTGTACTCTACGCCACCGGAGAC
CTTCCTGGTTAGCGCGTACGGCAACTTTTGCAACTTCTACCGGAGCCTGA
TCACGCACGTCGGCGCCAATGAAGACAGGGACTACTACGCGGCATGGCTA
GAGCAACAACAGCTGAAGCTGGCGAAAGGGTCGGCGCGGAGCCGGAGACG
TTCCATCGACCTTTACACCAGTGGTCGGCCGGCGAGAGACGAAACGTTTA
TCGTGGAACGACTCCTCGAGTCGGTCGACACTCGACTGAGTGACCATCAC
ATTCTCGTGTACACGGACGACATCATGGACGCGATCGAGAGCAACACGTC
GATTGTGGAGGTTTCGGCGTACAGCCAGACAAGCTCGTGTCGGTGCAGAC
TCTTCAACTGCTTCTCGAAAAGGTCTGTGTCCATTACATCGTTGGACCTG
ACTGGGCGGGCTTGTATCGATTCCACTCAAACCATCGCCGACTCCTGCGT
GCACGACCTGAAGAGGTTGTCGCTTTCGACAGGATGTTCTGATCAGGAGA
TGGACGGGCTCACCATAGCCCTGGTGTGCGATGCGGTGGCCGAAGCCGGG
GCCGACGGCCTGATACGTGCGCTCGAGACGTGTCCCATTTCCTCCCTGCG
CATCGACGGCACGATCTTCGACATACCTTGCGTGCCGGGAATGGTGCGCG
TTTTGCCCGAGCTGCAAGCGACCGACGTCAAGCTCACGCAGTGTGACTTT
GATAATTGGGGGAAACCCGTGTTCGATGCATTGTTTTCAAACGAGAACAT
ACGGTGGCTCGGCGTCTCCTCCACCAAGATCGGCGATGGGAGCGTCGGCG
CGCTGGTGGACATGGTGACGCGCGGAACGCTGACTCGGCTGGCTATTGGC
AACTATGGCATGGGGAGAGGGGGCATCCGTCGCGTTTTGGAGGCGACGAC
GCACGCTGGCAGCAACGTGGTGTTCATCAGCATCTTCGACAACGACATTG
ACGTTCCATCCATCTTCGAGGGATTGGGCAAAACTTCGCTGACGGGAATG
CACGTCGGCGAACTGAGTAACTGCAACACAGCGATCGCTAACTTCGTGGC
CGACACGCAGTGTGACATTGACACCAGTGACGCCGACGACTGCTACAACG
GCGGGGGTGGTGTGTTTCCCTGGCGCACGGAGTCACGCGTAGTTTATGTC
ACAGGAGGAGTATTTGGAGAGTTGATAATTAAATACTTTCTACGACACAC
TTCTTGTCATCGGAAACAAAACTACTCCCTTATTGATACTCTACGCCGCC
AATGGAAATAG
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