EsuBft1060_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1060_5a-0001
Unique NameEsuBft1060_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_623contigScaffold_623:83868..89989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1060_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length141
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000130.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1060_5aEsuBft1060_5aEctocarpus subulatus male Bft15bgeneScaffold_623 83868..89989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1060_5a-0001EsuBft1060_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_623 84495..89893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1060_5a-0001-exonagat-exon-11155Ectocarpus subulatus male Bft15bexonScaffold_623 83868..84944 -
EsuBft1060_5a-0001-exonEsuBft1060_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_623 86062..86133 -
EsuBft1060_5a-0001-exonagat-exon-11156Ectocarpus subulatus male Bft15bexonScaffold_623 88464..88607 -
EsuBft1060_5a-0001-exonagat-exon-11157Ectocarpus subulatus male Bft15bexonScaffold_623 89864..89989 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1060_5a-0001-exonagat-three_prime_utr-603Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_623 83868..84494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1060_5a-0001-cdsEsuBft1060_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_623 84495..84944 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1060_5a-0001-exonagat-five_prime_utr-375Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_623 89894..89989 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1060_5a-0001 ID=EsuBft1060_5a-0001|Name=EsuBft1060_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1419bp|location=Sequence derived from alignment at Scaffold_623:83868..89989- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCACCAAATCTACCCTGACATACACGCACGCCTTTTTTCTGGCAGCAGT
GCAAGCTTCACCCTTACCCCGCGTCGGCATCCTTTCTGCAACAAGTATGG
CGGTCGGGAATGTAGCATATATTGCGGTGGTTGTCGAGGCGATCATCGCG
GTCACAGAGACGGGAAATCGCGCTTCTCTCCTACCGTCGCTGAAGAAGCA
GCTGCCAAGGATGAAGAGCAAGCTGCGGTCGGCGATACAGACCGGAGTCG
AGGACGGCTCGCTAGCGAAGGCGATCAGGGGCAGCAGGGACTCTCGACGA
CATGGTCCCCTTGGGAGCTTCCTCCGGACTATCTTGCTTATTGCCTACAA
GCTCGGCTCCGCAGGAGGAAAGACGTCAACATCATCTGTCGCCAAGAGGA
AGATGAGGACCGTCGTCACCAGGAGAAAGGCCGTCGTCACCAGGAGAAAG
GCAGTAGTCGTGAGAGCGAGCAAATCCGCCACCGCCGCTAGGAGAAACAA
CGCCTCGAAGAAGAAGACTAGGGTTTCCACGTCGGCGAAGGCGCCCTCCA
CCGCCGTCTCGAACGCTGGCAAGATCGCTGCTGTACTTTGGCCCGGGTGG
CGGACCGCTAACCCCGCCAAAAAGACCGCTTCCGTCAAGAGAGCCGGGAA
GCCGGCAACGGTAGTGTCGAGACGGACAGCGTTAGCAGCCGGGAAAAAGA
GGGCTGCGGTAGCGAGGAGGAAGACCGTAACCAAGGGGGGGACCGTCGCA
AAGATCAAGGCAACAACGAGCAAGAAGGTTGCCAAGGGATGAGGCGGTGT
GTGGGGAGCCGGGAGTGTGCTGTGTGGCTGGACTGGCCATTGGCGGTGAT
CTTGCTGGGGCAGGAGAATAGCGATGTTTGTAGAGTAGTTTCTGGTCTCT
CGAAGAGGGCATACGCACGTTTGGAGAAGCGATCAGATGGATGCTATGTG
ATGAGCGCATAATGGTCAAGATGCGACCTTTTGTCGACAGCTATCACGGG
TAGAGAGAGATCTCGTGGACGGCGTTGTTGATCCCGGAGAGCTATCTCTT
GCGTCTTCGTGAGAGCCAGAGATTCTGGAGATCTCTTGCGTCTTCGTGAG
TGGTGGGCATGAGCAACCACGTTTCATGTATAGTCTAGACTAAGAAATCC
GGAGTATGTGCATTCATCATGGTGGTAATGAGTGGTACAACGGTCCCTCG
TCACTTTAAAGCAGACAACAAGCAGAGTATGCCGAGGATCTGCCCCTACT
TGTTGTGGCATGTCGTTCTTAGGGATAAGAGGATATTGTTGGTGGACATC
CTTGACTACATAGCACTGAACTGTGACTCAGGCTCCTAAATAGTGAAGCA
GTGGGATCTGCTTCCGTGTTGTTGTTGTACGTCAACGTTTTTTTCGCCCT
GCCGTTCGTTGTTGTTGTT
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protein sequence of EsuBft1060_5a-0001

>EsuBft1060_5 ID=EsuBft1060_5|Name=EsuBft1060_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MAVGNVAYIAVVVEAIIAVTETGNRASLLPSLKKQLPRMKSKLRSAIQTG
VEDGSLAKAIRGSRDSRRHGPLGSFLRTILLIAYKLGSAGGKTSTSSVAK
RKMRTVVTRRKAVVTRRKAVVVRASKSATAARRNNASKKKTRVSTSAKAP
STAVSNAGKIAAVLWPGWRTANPAKKTASVKRAGKPATVVSRRTALAAGK
KRAAVARRKTVTKGGTVAKIKATTSKKVAKG
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mRNA from alignment at Scaffold_623:83868..89989-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1060_5a-0001 ID=EsuBft1060_5a-0001|Name=EsuBft1060_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6122bp|location=Sequence derived from alignment at Scaffold_623:83868..89989- (Ectocarpus subulatus male Bft15b)
CTCACCAAATCTACCCTGACATACACGCACGCCTTTTTTCTGGCAGCAGT
GCAAGCTTCACCCTTACCCCGCGTCGGCATCCTTTCTGCAACAAGTATGG
CGGTCGGGAATGTAGCATATATTGCGGTGAGCAACAACAACGCCCGTTCC
CCGTTCCCCGTGGTTGTTGCTGCGGTGGTGCGCCGCGTTTTCGCTGTGCT
GCAACCGTCTTGTCCTGGCCGCTTGTGCTCATGTTGTTGGGCTGTTGTAG
GGACACGCGTTGTTGAAGAGGAAGAAGGTTGTTCCGTGCAGTGGCCGTCG
AGGAAGTGTTCCCTCGTGATCGCGGCGATGCCTGCTGCTGTATCATTATT
TTATTTTTTCAAGGATGGTGGGCAGGCACCCCATTTTTTTTCCTGTCATC
ACCCGTTTATTCTGGACTCGCACACCTCGCGGTTGCGGTACAATTATGGA
CACAACAGCGGGGGTCACAAAGGAAGAAGGCCACGCAGATAGGAGTCGGA
TTCTCCGCCTTCGTTCCTGCGATGCTTGCCTTGATTTTGCAAGTACTTCA
GAAACAGAAAAAACAGGGCTTTCTTGCCATGTTGGCGCAGACAAAACACC
CTATTCCAGTGGCTGAGGGTATAGACTAGAAGCACGCTCTTTCCACACCG
TAATTTGCGTCGTTCTAACCTGACGATTACTTGGGCTGAACGGTGCCGAA
ATCGACCACTCTGTTACATTCCGCCTCTGCTTCCATTCAGAGTCGCCTCA
TTCCCCCGGTGCGTGCGCGTGATCGGTGTGGTGCTGGGGTCGACAGTTGG
TTGCGGATGTTGTGACCTATCATAGCAGTGTTGTAGTGCTTGACTTGAGT
TGCGATGTACAGCAGAATGTATGTAATGAAACTATAGAGAAGAAGATGGG
GTGGAGTATAGTAGCACACCCACCGCCCAACCATGCCCGACAAAGCAACA
CTAGAATATAACCACAACGGATTATTTACACACAACACATGATACACATT
ATGTGCGTAGTCCAGTTTACGTACGACGGTTTTTTCTGGTTGGGTTGATG
GGATGGCTTGCGGCAGGGGGGGGGGCAACTACAGCAACAGCAGCAGTAGC
AGCAGCAGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAGCGGCGGCGGCAG
TATCATAACTTGCCCAGCTCTCTGCTCTGAATAGATGTACCCTCTTTTCA
CGGAAAGAAAAATATATATCTATGCATACAATAGCCAGGAGTACTGCTAT
CTGTAGTACTCTACCAAAAACTATCACTCCGTATTCTACAATAGGCTTGG
CGTGATATCCGGTGTTCGTTACACCGTACCAACTCGACCCACATCAACAC
GGTACGATCCCTCTGCCTTTGGTTTGTGGCAGGTGGTTGTCGAGGCGATC
ATCGCGGTCACAGAGACGGGAAATCGCGCTTCTCTCCTACCGTCGCTGAA
GAAGCAGCTGCCAAGGATGAAGAGCAAGCTGCGGTCGGCGATACAGACCG
GAGTCGAGGACGGCTCGCTAGCGAAGGTACTAGATAGGGCGGGGTAATGA
GCCGCTGGGTAGCGACTCAATACCTTGCAGTAGTCTCAACTGCGATGCTG
ATGGTGCACGAATCCCGACACACAGCAGCGTGAATCGTTTGTGCTACAGC
TACGCGTGTGCACCACACACAGCAGGCGTGCGACGGGCGCGACGAGGTTG
CATGTGCGGCCCCGTTCAAAAGGTCGCACTTTCCATGCGGTTGTTTCTTT
TCCGTTAATGCACATGCAACACACCCCACGAAGATACGAAGAAAAAAAAT
GTTAAGCCTTCCCGCTGTGCGGACGCAAAAACACGCACATCATCAGGGCA
TCTGGAAGAGAGGCACGCATGCGGCATGTACCTGGCAGCGAGCGTATCAC
ACATCATGCCGTCGAGGAGCACGACCAGCAGCGTAGACTTAGGATTGCGA
CAAGACAGATGGCAAAATTTGCGTCAGGCTCGCAACTCGCCCGCCACATT
CGTCTCAAGCCTTCCGAGTTTCCAGCTAAGCGAAAGCAAGCAGTCTAGAC
TACACTGATTGCGAAGACAGTCAGTAGCGCGGCGCAAGTACGTATCCTGA
ACCGACCCCGCGAGGAACCATCCCGATGACGCACAGCAGCAGAAGCCCCT
CACGCCCTCGACGGACTCTCTGGATGGTAGGTGCGATCTCTGGACTTGGA
AGGTGTGCTATGCTGTGTGTTGTTTGTTTGTGATACAATAATCGGTCTGT
TGTTCGTTGTTTTGTGAGCACTCGGTTGGACCCCTCAACACCAACAAGCA
CCATCCAGGTTACACACGGCGCATGACCATACCCACAACGCACAGGTCGT
AAAGGCCCGCCCCCTCCTGGTTATCATAGATAGCTGGTCTCGGATCAGCT
TCTTGTTGTTCTCCTTCTGCTGATGTGGTGTAGCCCTCCCGGGGTTTGAA
CTCGAAACTCGACCACGTGTCTGTGTGTGTGCAGTGTGCAATCTCCGATA
GCCATTTCACCTCTCCACAACTCCTGGGCTGCCGGGGACGCGATCTCCTA
CGAATTTGGGTCACATATACCTGTGAAGCGCGGCCATCTGTTGCCGAAGC
ACGACTGAATCGGTGTGACGGACAGCGCGTATTTCTTCTTCCTCAGAAGT
GAACAGATCGTCAAACGATGCCCTATAGGTCTCGTTCTGGTCCGAAAGGT
GCGATGAATGTGCGTCACGGAAATCAAACTTTGGGCCCCTGCAACACGCG
GCGGAACTCAGGCCGATATTTGGAGCCTTTTTCTCCCTCCTGGGAGATGA
AGGGAAAAAAGGTCGCGCTTCGCGCTCCGCGGCTCATTCTTAATTTGTCT
AAGCGTGTTTGTGCCTATGTAACCCGTTTTTCTTCAATCCGCGTCGATCG
CGCGAACCGCTTGATGATGGCAGTACTATCGCGGGGTGATAAACACAACT
TGGCGCTCTCCTCAAGGGCAAACGAGGGGGAGTCAACGAAAAAACGAGAG
CCGTGGCGAGAAAAAAACGGCATGGTCCAATGTCCAATGCCCGGCTTCGA
AGTGTAATCAAACAAGGAGAAGATACAACAACACCACATCGAAACATTCT
CTGCAATACCTGCTCTTCTCCTGTCATCGTTATCTTGCAGCTGGTCTTTC
TTTGCGCGACACTTGTCTTGGTTCAATGGGACTCCTCTCTGTCTTCACCA
GTGGATTCAGAATAGTCTGGAATCGGAACCTGAATATCCTCCCTATTGTT
TGTTCCTGGACCCCTTTCCACTATCAACTCTGGAGGTCCATATTCACCAG
TCGGCGTTGTTGACGGTTGTACAGAAAAAAATATGGATCGAAGCCCTTGT
GTATCTTTACACCAACGTCCATCGCCCCGTTTGTGCCTGCATGAGAAAGA
GCGAAAGAGTGAAAGAGCGAGAGAGCGAAAGAGAGGGAGAGAGAGAGAAA
TAGAGAGAGAGACAGACGGACGGACAGAGAGTCGACTCGCCACCCCCTAA
GTGGGCAATGATACAAGGTTGTTGTTGAAACGTTTGTGTGACACTGTTCT
TACCAAGATGCCACTCACCTAACGAGTTTGTGCCCTCCTGCCATTATTCT
CCTTTCAAGTTCACGAGCATGGCTATTTTGTGTATGTGAGAGCGTATTCC
TCTCTTAACAAGCGCTAGAAGCAACATAGAAGTTACCCTGAGCCATCAGC
ATGGACGTAAAGCTGACCAACCCTTTGCATCCCGTGCGTTTGTTGCCGCC
GTCGTGATTTTTCTCGGATTTTTCCTGCTTTGGGCATCAACCTGTGTCCT
CGGTACGACAAAAAAATACACGAACACTGTGTGGTGGACACCACCCACAA
ACGAAGGCGATCAGGGGCAGCAGGGACTCTCGACGACATGGTCCCCTTGG
GAGCTTCCTCCGGACTATCTTGCTTATTGTAAGTGGTTGACCTCTGTCAA
AGCGGCCACCACGTCCTCATGTCTGACGTCTTCATGTCTGACAGAGCCGA
AGAGCACATGTTCCACCGCGAAGTTTACCATGATAGTAATTCAAGCGTTG
TAGGAAAGGGGAGCGCAGTGCATCACAGTATAGATATCGTCAAACGTTGC
AGAGAGTCAGGCAAGTCGATGTGGGAAACTGTTGGATGGGCTGTTCATCT
ATTCATGTACCGGTTGCCTCTTCAAGCAGCGTGTTGAACGTTTGGTTGAC
GAATATGGTCGTACAAGCGTGAAACCCTCTGAACATAACACGGTACATGT
AGACTATGCGCTTGCTTTCTGCCATTTATTATGCTGCGTGATCGTCCTTA
ATTTTAGGAGTGTACTCTCAAGTAAACGCATGCCGTAGTCGTTAGACCAT
TAGCCTCGCATCCCTACAATGCCGGCACGGGGCGATATTCCGAATCAATG
CCGGCCCAGGCTACGTCTCATGACGACGAACCAGAACAGCTGGTCATCGC
CCTTGCGTTTGCTGTGCCTATCCAGATATGCCATGAGTTGATTGGGCATT
TGGGGGGGGGGGGGGNNNNNNTTCGGCATCTTGTGCTTACTTCCTTGCGT
ACGGATGACAGCTGCGTATGACTTAATTTGTTTTCTGGTGCTTTCACTTC
CTGAGACAGTTGTAAGCACTGTCTAACTGCCTCGAGGGCGCTTGACCAAC
TCTAACACAACGTGGTGCGATTATCCCCTTTGCGCGGAGTGAGGGTTCTC
GACCCCGCACAACATGATCTACTCGACCACTTTTCATGGTACCGCAAAAA
AAAAAAGCGAAACAGAAAGCTGTAACCTGGTCGCCGAGCTCACGAAGTGA
TCGGCTTGTTTTACAACGTTGCTGCCAAGCGACGAAAACCCAACCCTGAT
GGCAAACACCGGGGGGGGCGGGGGGGTAATTCTACCGCGTGCGTGTCCAT
TCCGAATCGTGTCAACTCAATAGCCGCCGTGATTCGGGGCTCCTCCTCAA
AACAGCTTTAAGAGCGAGCACCCTCCGCTCCACTTCTGGTGCGTAGATTA
GTCTAGTGTCATTGATTCTGGACGGCCCGAAAAATATTTCCACAGGCCTA
CAAGCTCGGCTCCGCAGGAGGAAAGACGTCAACATCATCTGTCGCCAAGA
GGAAGATGAGGACCGTCGTCACCAGGAGAAAGGCCGTCGTCACCAGGAGA
AAGGCAGTAGTCGTGAGAGCGAGCAAATCCGCCACCGCCGCTAGGAGAAA
CAACGCCTCGAAGAAGAAGACTAGGGTTTCCACGTCGGCGAAGGCGCCCT
CCACCGCCGTCTCGAACGCTGGCAAGATCGCTGCTGTACTTTGGCCCGGG
TGGCGGACCGCTAACCCCGCCAAAAAGACCGCTTCCGTCAAGAGAGCCGG
GAAGCCGGCAACGGTAGTGTCGAGACGGACAGCGTTAGCAGCCGGGAAAA
AGAGGGCTGCGGTAGCGAGGAGGAAGACCGTAACCAAGGGGGGGACCGTC
GCAAAGATCAAGGCAACAACGAGCAAGAAGGTTGCCAAGGGATGAGGCGG
TGTGTGGGGAGCCGGGAGTGTGCTGTGTGGCTGGACTGGCCATTGGCGGT
GATCTTGCTGGGGCAGGAGAATAGCGATGTTTGTAGAGTAGTTTCTGGTC
TCTCGAAGAGGGCATACGCACGTTTGGAGAAGCGATCAGATGGATGCTAT
GTGATGAGCGCATAATGGTCAAGATGCGACCTTTTGTCGACAGCTATCAC
GGGTAGAGAGAGATCTCGTGGACGGCGTTGTTGATCCCGGAGAGCTATCT
CTTGCGTCTTCGTGAGAGCCAGAGATTCTGGAGATCTCTTGCGTCTTCGT
GAGTGGTGGGCATGAGCAACCACGTTTCATGTATAGTCTAGACTAAGAAA
TCCGGAGTATGTGCATTCATCATGGTGGTAATGAGTGGTACAACGGTCCC
TCGTCACTTTAAAGCAGACAACAAGCAGAGTATGCCGAGGATCTGCCCCT
ACTTGTTGTGGCATGTCGTTCTTAGGGATAAGAGGATATTGTTGGTGGAC
ATCCTTGACTACATAGCACTGAACTGTGACTCAGGCTCCTAAATAGTGAA
GCAGTGGGATCTGCTTCCGTGTTGTTGTTGTACGTCAACGTTTTTTTCGC
CCTGCCGTTCGTTGTTGTTGTT
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Coding sequence (CDS) from alignment at Scaffold_623:83868..89989-

>EsuBft1060_5a-0001 ID=EsuBft1060_5a-0001|Name=EsuBft1060_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_623:83868..89989- (Ectocarpus subulatus male Bft15b)
ATGGCGGTCGGGAATGTAGCATATATTGCGGTGGTTGTCGAGGCGATCAT
CGCGGTCACAGAGACGGGAAATCGCGCTTCTCTCCTACCGTCGCTGAAGA
AGCAGCTGCCAAGGATGAAGAGCAAGCTGCGGTCGGCGATACAGACCGGA
GTCGAGGACGGCTCGCTAGCGAAGGCGATCAGGGGCAGCAGGGACTCTCG
ACGACATGGTCCCCTTGGGAGCTTCCTCCGGACTATCTTGCTTATTGCCT
ACAAGCTCGGCTCCGCAGGAGGAAAGACGTCAACATCATCTGTCGCCAAG
AGGAAGATGAGGACCGTCGTCACCAGGAGAAAGGCCGTCGTCACCAGGAG
AAAGGCAGTAGTCGTGAGAGCGAGCAAATCCGCCACCGCCGCTAGGAGAA
ACAACGCCTCGAAGAAGAAGACTAGGGTTTCCACGTCGGCGAAGGCGCCC
TCCACCGCCGTCTCGAACGCTGGCAAGATCGCTGCTGTACTTTGGCCCGG
GTGGCGGACCGCTAACCCCGCCAAAAAGACCGCTTCCGTCAAGAGAGCCG
GGAAGCCGGCAACGGTAGTGTCGAGACGGACAGCGTTAGCAGCCGGGAAA
AAGAGGGCTGCGGTAGCGAGGAGGAAGACCGTAACCAAGGGGGGGACCGT
CGCAAAGATCAAGGCAACAACGAGCAAGAAGGTTGCCAAGGGATGA
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