EsuBft1060_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1060_2a-0001
Unique Name	EsuBft1060_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_623	contig	Scaffold_623:54323..55267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1060_2
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	94
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-22_000170.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1060_2a	EsuBft1060_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_623 54323..55267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1060_2a-0001-exon	EsuBft1060_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_623 54323..55267 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1060_2a-0001-cds	EsuBft1060_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_623 54323..55267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1060_2a-0001	EsuBft1060_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_623 54323..55267 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_623:54323..55267+
coding sequence from alignment at Scaffold_623:54323..55267+

spliced messenger RNA

>EsuBft1060_2a-0001 ID=EsuBft1060_2a-0001|Name=EsuBft1060_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=945bp|location=Sequence derived from alignment at Scaffold_623:54323..55267+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGAGGTCCAAAGCGAGCAGCTCGCCAACAGCACCGACGCCGCCAA
CAACACCGGCGCCGCCAACAACACCAACAACGCCGCCAACAACACCAACA
ACGCCGCCAACAGCACCGACGGCGACGCCGGCGTCAAGGACGGCGCTACT
GCTGTTGCCCCCGAGGAGTCTTTGTACCGCATGAAGCCCGTCGACGAGCA
GGCGAAGCAGGCGGTGGACAACATCTCGACCCTGACGTCGTTCAAGTCGA
CCATCATGGCCCGGACGGCCGTCTACGATACCCCCGAGGGCGTCCTCCAG
TCGCTGAGGTTCTACAGGAGGAGGTTCAAGTGGTTCGACTTCGACGAATC
GGACCTGGAGAAGACTACCACCTACTACTGCTGCGACGAGCAGGGCATGC
ACAACGTCCACCTCACCGGCCACCTCATCATTTGCCACAAGGTCCGCGGG
AAGTACATCTTCCGCTCCTGCGTCGCCGAGTTCTACGAACAGGTGACCTT
CGACCAGCTGGCGTACAAAGTTCTTGCCTCCAGCACCTCCATCGCCGGTG
GCATTGCCGCTAGCGCGATTACGGGGGCTGGATTGGCGTGGCCCACGGAC
GCCTTTACGTGGGGAACGGGCTCCATAGTCGGAGGGATAGCGGGAGCCAT
CGTGGGGGTAGTGGGCGCAGTGTTCGTCAACGTGGACGCGGACTCCAAGG
AGAAGCAGATCGAGAAGAAGCTCGGGTCTAGCCTGTACAACGCCAGCACG
AACAGGATAAACAGCCACGGGATCATGGAGATGCTTCTACTCCACTACCT
CCTGGCCGACCAGAAGTACAACATCGACGGGACCGACGTCCGCATCACGG
GCGTGCAAGAGCAAGACTTCCCCACGGCCGGGATGGGTGGGGGTACAACA
GGCGGCGGCGGCGGCGGGGGCGGGGGCGGTACAACCGCATTATAG

protein sequence of EsuBft1060_2a-0001

>EsuBft1060_2 ID=EsuBft1060_2|Name=EsuBft1060_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=314bp
MLEVQSEQLANSTDAANNTGAANNTNNAANNTNNAANSTDGDAGVKDGAT
AVAPEESLYRMKPVDEQAKQAVDNISTLTSFKSTIMARTAVYDTPEGVLQ
SLRFYRRRFKWFDFDESDLEKTTTYYCCDEQGMHNVHLTGHLIICHKVRG
KYIFRSCVAEFYEQVTFDQLAYKVLASSTSIAGGIAASAITGAGLAWPTD
AFTWGTGSIVGGIAGAIVGVVGAVFVNVDADSKEKQIEKKLGSSLYNAST
NRINSHGIMEMLLLHYLLADQKYNIDGTDVRITGVQEQDFPTAGMGGGTT
GGGGGGGGGGTTAL

mRNA from alignment at Scaffold_623:54323..55267+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1060_2a-0001 ID=EsuBft1060_2a-0001|Name=EsuBft1060_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=945bp|location=Sequence derived from alignment at Scaffold_623:54323..55267+ (Ectocarpus subulatus male Bft15b)
ATGCTCGAGGTCCAAAGCGAGCAGCTCGCCAACAGCACCGACGCCGCCAA
CAACACCGGCGCCGCCAACAACACCAACAACGCCGCCAACAACACCAACA
ACGCCGCCAACAGCACCGACGGCGACGCCGGCGTCAAGGACGGCGCTACT
GCTGTTGCCCCCGAGGAGTCTTTGTACCGCATGAAGCCCGTCGACGAGCA
GGCGAAGCAGGCGGTGGACAACATCTCGACCCTGACGTCGTTCAAGTCGA
CCATCATGGCCCGGACGGCCGTCTACGATACCCCCGAGGGCGTCCTCCAG
TCGCTGAGGTTCTACAGGAGGAGGTTCAAGTGGTTCGACTTCGACGAATC
GGACCTGGAGAAGACTACCACCTACTACTGCTGCGACGAGCAGGGCATGC
ACAACGTCCACCTCACCGGCCACCTCATCATTTGCCACAAGGTCCGCGGG
AAGTACATCTTCCGCTCCTGCGTCGCCGAGTTCTACGAACAGGTGACCTT
CGACCAGCTGGCGTACAAAGTTCTTGCCTCCAGCACCTCCATCGCCGGTG
GCATTGCCGCTAGCGCGATTACGGGGGCTGGATTGGCGTGGCCCACGGAC
GCCTTTACGTGGGGAACGGGCTCCATAGTCGGAGGGATAGCGGGAGCCAT
CGTGGGGGTAGTGGGCGCAGTGTTCGTCAACGTGGACGCGGACTCCAAGG
AGAAGCAGATCGAGAAGAAGCTCGGGTCTAGCCTGTACAACGCCAGCACG
AACAGGATAAACAGCCACGGGATCATGGAGATGCTTCTACTCCACTACCT
CCTGGCCGACCAGAAGTACAACATCGACGGGACCGACGTCCGCATCACGG
GCGTGCAAGAGCAAGACTTCCCCACGGCCGGGATGGGTGGGGGTACAACA
GGCGGCGGCGGCGGCGGGGGCGGGGGCGGTACAACCGCATTATAG

Coding sequence (CDS) from alignment at Scaffold_623:54323..55267+

>EsuBft1060_2a-0001 ID=EsuBft1060_2a-0001|Name=EsuBft1060_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=945bp|location=Sequence derived from alignment at Scaffold_623:54323..55267+ (Ectocarpus subulatus male Bft15b)
ATGCTCGAGGTCCAAAGCGAGCAGCTCGCCAACAGCACCGACGCCGCCAA
CAACACCGGCGCCGCCAACAACACCAACAACGCCGCCAACAACACCAACA
ACGCCGCCAACAGCACCGACGGCGACGCCGGCGTCAAGGACGGCGCTACT
GCTGTTGCCCCCGAGGAGTCTTTGTACCGCATGAAGCCCGTCGACGAGCA
GGCGAAGCAGGCGGTGGACAACATCTCGACCCTGACGTCGTTCAAGTCGA
CCATCATGGCCCGGACGGCCGTCTACGATACCCCCGAGGGCGTCCTCCAG
TCGCTGAGGTTCTACAGGAGGAGGTTCAAGTGGTTCGACTTCGACGAATC
GGACCTGGAGAAGACTACCACCTACTACTGCTGCGACGAGCAGGGCATGC
ACAACGTCCACCTCACCGGCCACCTCATCATTTGCCACAAGGTCCGCGGG
AAGTACATCTTCCGCTCCTGCGTCGCCGAGTTCTACGAACAGGTGACCTT
CGACCAGCTGGCGTACAAAGTTCTTGCCTCCAGCACCTCCATCGCCGGTG
GCATTGCCGCTAGCGCGATTACGGGGGCTGGATTGGCGTGGCCCACGGAC
GCCTTTACGTGGGGAACGGGCTCCATAGTCGGAGGGATAGCGGGAGCCAT
CGTGGGGGTAGTGGGCGCAGTGTTCGTCAACGTGGACGCGGACTCCAAGG
AGAAGCAGATCGAGAAGAAGCTCGGGTCTAGCCTGTACAACGCCAGCACG
AACAGGATAAACAGCCACGGGATCATGGAGATGCTTCTACTCCACTACCT
CCTGGCCGACCAGAAGTACAACATCGACGGGACCGACGTCCGCATCACGG
GCGTGCAAGAGCAAGACTTCCCCACGGCCGGGATGGGTGGGGGTACAACA
GGCGGCGGCGGCGGCGGGGGCGGGGGCGGTACAACCGCATTATAG