EsuBft1059_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1059_7a-0001
Unique NameEsuBft1059_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_565contigScaffold_565:645907..646566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1059_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length66
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_7aEsuBft1059_7aEctocarpus subulatus male Bft15bgeneScaffold_565 645907..646566 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_7a-0001-exonEsuBft1059_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_565 645907..646566 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_7a-0001-exonagat-three_prime_utr-569Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_565 645907..646227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_7a-0001-cdsEsuBft1059_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_565 646228..646566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_7a-0001EsuBft1059_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_565 646228..646566 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1059_7a-0001 ID=EsuBft1059_7a-0001|Name=EsuBft1059_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=660bp|location=Sequence derived from alignment at Scaffold_565:645907..646566- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGCGCGTGGAATTCAGATACAAGTGTCCATTTGCATTTCGCGG
GATTTACCATCGATGTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCG
ATGAACTTGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCT
CTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTAC
ACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCG
GGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCA
ACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTC
GTTTGAAGTTGGCGTCTTGTTTGAGAGTAGATGTGACAGATTTGCGTAGA
ATAGGGTAAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACG
GAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACAAGCG
GACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATATAGGATAC
CATCAGGATTGTCATTGGTAAGTTGAAGAGGAGATACTTTTACGATGTAA
ATGACAGTAGAAATAAGTCCTACATATGTTGTTGTACTTCGTATTGGTTT
AATATTCATG
back to top

protein sequence of EsuBft1059_7a-0001

>EsuBft1059_7 ID=EsuBft1059_7|Name=EsuBft1059_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MVVRVEFRYKCPFAFRGIYHRCGRLGEEGYEFIDELATHAVGGRDGGTMA
LKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQS
TPMIWGWSVDAS
back to top

mRNA from alignment at Scaffold_565:645907..646566-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1059_7a-0001 ID=EsuBft1059_7a-0001|Name=EsuBft1059_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=660bp|location=Sequence derived from alignment at Scaffold_565:645907..646566- (Ectocarpus subulatus male Bft15b)
ATGGTTGTGCGCGTGGAATTCAGATACAAGTGTCCATTTGCATTTCGCGG
GATTTACCATCGATGTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCG
ATGAACTTGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCT
CTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTAC
ACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCG
GGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCA
ACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTC
GTTTGAAGTTGGCGTCTTGTTTGAGAGTAGATGTGACAGATTTGCGTAGA
ATAGGGTAAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACG
GAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACAAGCG
GACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATATAGGATAC
CATCAGGATTGTCATTGGTAAGTTGAAGAGGAGATACTTTTACGATGTAA
ATGACAGTAGAAATAAGTCCTACATATGTTGTTGTACTTCGTATTGGTTT
AATATTCATG
back to top

Coding sequence (CDS) from alignment at Scaffold_565:645907..646566-

>EsuBft1059_7a-0001 ID=EsuBft1059_7a-0001|Name=EsuBft1059_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_565:645907..646566- (Ectocarpus subulatus male Bft15b)
ATGGTTGTGCGCGTGGAATTCAGATACAAGTGTCCATTTGCATTTCGCGG
GATTTACCATCGATGTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCG
ATGAACTTGCGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCT
CTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTAC
ACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCG
GGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCA
ACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAG
back to top