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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Symbol | SOD |
| Status | Manually annotated |
| Seed ortholog | 55529.EKX32032 |
| ProteomeId | EsuBft1059_5 |
| Protein domains | PTHR11404 |
| Protein domains | IPR001189 |
| Protein domains | IPR019832 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SignalP-TM |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | G3DSA |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | IPR019833 |
| Protein domains | IPR019831 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | superoxide dismutase [Automatic annotation] |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1712 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 7.01e-58 |
| EggNOG OGs | COG0605@1|root,KOG0876@2759|Eukaryota |
| Date last modified | 2016-08-24 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K04564 |
| KEGG Pathway | ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016 |
| EC | 1.15.1.1 |
| Description | superoxide dismutase |
| Description | oxidoreductase activity, acting on superoxide radicals as acceptor |
| COG category | P |
| BRITE | ko00000,ko00001,ko01000 |
Cross References
External references for this mRNA
| Database | Accession |
| Ec | 1.15.1.1 |
| GO | 0046872 |
| GO | 0055114 |
| GO | 0004784 |
| GO | 0006801 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1059_5a-0001 ID=EsuBft1059_5a-0001|Name=EsuBft1059_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1712bp|location=Sequence derived from alignment at Scaffold_565:617825..624273+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CACGATCCCACGACATCCCGCTCGGATTGTTCCATTTGCACGCGTCGTTC CCCGGATCAAAGAGCCAGCGCGCGATCCTCTGCTATCGTTGTCTTACAAC TTCTGCCTTCGTCAACCACACCCTCCTGGGAACAGCGCTTTCGACGACAG AGGAGATGGCCATGAGGAAGAAGAGCTCGACGCCGATGCTGGTAGGACGA TGCCTCGCCCTGTCTACGCTGGCCGCGGTTGGGACGAGCGCCCAGAACCT CCCCGTGCCTCCCCTCCCCTACTCGTACGGGTCCTTGGTGCCCTTCATCA GCGAACACGCGTTGAGGGTCCACCACCTTGGACACCACGCCGCCTACACC TCGCAGCTGAACGCCGTGCTGGAGAGAATGCGTTGGGATCCGGAGCTGAA GCATCTGGCCAAGATGGGAGTAGACGAGCTGTTGCACAACCTGGAGAGCG TGCCGGAGGACTATCGGGCGGCTGCTCGTCGGGCGGGGGGAGGCTTCGTG AACCACGACTTGTTCTGGAACGTGCTGTCGCCTTGGGGGGGACACCCTCC AGGGCAAGAGTCTGATACTATCCAGGAACGGCACCTGGCGGAGGCCATCG ACCGTTCGTTCGGATCCTTCGCGGAGATGCAGTACGCCTTTTCCAATGCG GCGTCCGCCTTCTCCGGCTCGGGGTGGGTGTTTCTGTACTTCAATCACGA GGAAAAGACCCTAGACGTGGTTGTCCTAGAGTACGAGGACACGCCGGCCA TGAACCCGAACACAACCCCCATCCTGCTCCTGGACCTGTGGGAGCACGCC TACTATCTGGATTACGAAAACCGCAAGGACGTGTACATCACCAACTTTTG GGCGTCGGTGGACTGGCCGAGAGTGGCGACCCGCTACGCGGAGGCCTCTG GCGAAGTGGTCCCGGAGGCTCTGCCCTCCCCTGAGAGGCGGGAGAAGGGA GCGGTTGGACTGACGCCGGCGTTGCAGGACGCGGACAAGGCGTTGTTGGC GGAGGACTGAGTAGAGAGACAGCGGGGTGCAGAGACGGNGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATACAGAGGAAA GCCCGGCTGACCTAGAACATGTGAAGCCATGCCTAATACGAGCGTGTTCC CCAAGACACGAAATTTTTCGTTCCTTGAGGTCATGGCAACAGCGGGTCTG GCGCCGATGACAGCAATGTGGAATAGGAGCACAGGGGGCGTGTTTGGGCA GGTTACTGGACAATGGGCGACTTATGGGTGCCAGAGGGGGAGGGGGAGTG AGGGCGGGTTTGTTTTTGATGCTCTTGTTGCCGCTTAGATAGTGCGGAAG AGGCTTTGCGCCCCTGATGCCGTTGTGCTTGTGCAGGCAACAAGTTGTTG TCGTGTCATACAACGCCCATTCGATTGTGTTGCAGGTGCGCGGCAAAGTG GGGAATGTAAAATATAATATGTTCTTTGAACCTGGAGAGAGAAGGGAGAG AGAGAGAAGAGATGTTCACCATCGCGTTTGCGCCTCTCCAGCAACCGCAG CGCACAAATAGTCTAGATTGGGTTAAGCTCCCTAGTTGGTGTGTTCGGAC ATCGGATACAACAGCGAGCCGATTTTGCCCCAATGCTGGAACGGGCGAGG CAAATGCAGCTGTAGTCAAGTGTTTTGTTCTACGAAGCACGTCGCATCAG AAAAACAGACCC back to topprotein sequence of EsuBft1059_5a-0001 >EsuBft1059_5 ID=EsuBft1059_5|Name=EsuBft1059_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=284bp
MAMRKKSSTPMLVGRCLALSTLAAVGTSAQNLPVPPLPYSYGSLVPFISE HALRVHHLGHHAAYTSQLNAVLERMRWDPELKHLAKMGVDELLHNLESVP EDYRAAARRAGGGFVNHDLFWNVLSPWGGHPPGQESDTIQERHLAEAIDR SFGSFAEMQYAFSNAASAFSGSGWVFLYFNHEEKTLDVVVLEYEDTPAMN PNTTPILLLDLWEHAYYLDYENRKDVYITNFWASVDWPRVATRYAEASGE VVPEALPSPERREKGAVGLTPALQDADKALLAED back to topmRNA from alignment at Scaffold_565:617825..624273+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1059_5a-0001 ID=EsuBft1059_5a-0001|Name=EsuBft1059_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6449bp|location=Sequence derived from alignment at Scaffold_565:617825..624273+ (Ectocarpus subulatus male Bft15b) CACGATCCCACGACATCCCGCTCGGATTGTTCCATTTGCACGCGTCGTTC
CCCGGATCAAGTGAGTCACGGTGGCGATATTGATTATGAGGAACACGCAG
GTCTTCGTGAGATGTAGGTTGGTCCGCGTGCACCGCGCCCGGGCCGCTGA
CCTCGGCTTTTCTGCTCCCTCTTGATGTGCTTCAGACCATGTGCGCATAT
ATGTGCGCTACATTCAAGACATGCGCTAACGCTTTTGGTGCTTCAGTTGT
GGTGTTGAACTTGCCGACATTGTGTAGGAGGGGTTGCACGTTTGTTTGAT
ACTTCTGGCGTGCCCTCCTACTGGATCACAGACCTTCACAGCTAGCCCAG
CAAAAATATTTTCGATTCCGTCAAGAGCCGCCTCGCCGCCCTGGTGATCG
AAGCTGACAAGAGTCTCGTTTTATTCCCTCGCCTCTCACGTTTGGGGCAT
GACGGCAGAGAGCCAGCGCGCGATCCTCTGCTATCGTTGTCTTACAACTT
CTGCCTTCGTCAACCACACCCTCCTGGGAACAGCGCTTTCGACGACAGAG
GAGATGGCCATGAGGAAGAAGAGCTCGACGCCGATGCTGGTAGGACGATG
CCTCGCCCTGTCTACGCTGGCCGCGGTTGGGACGAGCGCCCAGAACCTCC
CCGTGCCTCCCCTCCCCTACTCGTACGGGTCCTTGGTGCCCTTCATCAGC
GAACACGCGTTGAGGGTGAGAGAAGACCAGCATTCTTCTCTCTGCTGTAG
ACTAGGGGTGTTTGTGTGTTTGTGCTGTGCGTGTGTTTCTTCTGGTAGCA
TCGACCGCGCTGACCCGGCTGGCCAACGGAAGTACTTTTTTTGTTGTTGC
AGTTTATGCACATGTGTGGAGAGAGGCTGGCTCGGCTTGGCCAAGGCAGG
CCGAGTGGGTGTTGTAGTTTAGTGCAAGTCTTGTGCTGTGGACGGAAGAG
GTGGGTCCTGCTGAAAATCTGCCATGGAAAACGCACCAGAAAGATTACCT
GTTGAACTAAGCTTCAGACGTCAAGATCCACAGGTCTACCCAAGGAAGCA
AAGTTTTTTTTGGAATCTGCCACTCGACTGAACCTATTTACGGCTGCATC
TCGTATTCAATGGTACGCGCACTTTCGCGCCAGTATCCATCGTGATACTA
CCCGACGAGCACGTAATACTTCCAACAAATCGTGCGTGCACAAGGGACGC
ACATTTCACGTACTCGGATGCACGGTTTCAATAGCAGTACTCCGTAAAGA
TTTGTACTGCGGCAAGAAGTACAACACCGCCGTTCAGTATGCCTTTGCCG
TGGTCTACGGCTACCGGCCGTGGACACATCAGAAATGAAAGCCTCAAGCA
TGGTTGATTCGTGCTGTCCGTCCTTTTCGGCATCGACCTCTCACTCAAGT
TTGCCTCTACCAAGGGAACAAGACCGTGCGTGAGCCCGGTGAAGACATAT
ATACACATATCATTCTCTCATACAGCAGTCATGTGCATAGGCCCTCCATA
AGGCGGGTTAAATAAGGCTGGTGCCCTAAATATGGCGGGTAAAGCTGGCG
GCGCAAACGGAATAATCAAGTTAATCTACACATTGAATAGGGCGGGCGCT
CTGTATCGGTCGGGTGAATCGGTCTGGCGCGTTCCCGCCCTATAGAGGGC
CTGCGAGTGTATGTGTTTGTGTGCGGGTCCCCCCGGGCGGGGAGCCCCCC
CAGAGAAAGTATCGTTTTAGCGCCGACGAGGTCCGGGCACTTTCAGCAGT
AAACATCGGTACCCGCACACTCTACTACCTGTCCTCCTAGTTCTTTACGT
TGGTTGTGTTGAGGAGTAGTATTCCATCCGGTTCCTGTCTGGGTTTGGTG
TCGTTCCCAGCTCCGTGGTAGAACATCCGCCTCTCTGTGGTTTACTTCCT
ACTGCTGTAGGCTGAGGTTTGTCTCTACCCATACAGCAGTTCAAGCATGC
TGCTTCCGACCGTGGCCCGTGGTTCTGGGTGAAGGTCTGTGTGGTGACGC
ACTGTAATTTCGGCTGCATTTTGTGCCGCTTTCTGCGTCCATGTACATGG
CGGTTAACATGTGGGTGTGGGTTGCTGCCGGCCGTTCTTCTAGGAAAATG
AGTAGTCTATGCACAGCAGCCTTCCGTCCTTTCTGAGGATGATTTCCACG
CCCCTTGGTGAGCCCCACCGGCGTATTGGGCTATACTTTCCTTCACGTAT
CCATCATGCCAGGGCGTCCCTTCATGACGCTCTTGTTTCACGTTATTGTC
GTTTGTGCTGTTGCATTCTATGGACAGGTCCACCACCTTGGACACCACGC
CGCCTACACCTCGCAGCTGAACGCCGTGCTGGAGAGAATGCGTTGGGATC
CGGAGCTGAAGCATCTGGCCAAGATGGGAGTAGACGAGCTGTTGCACAAC
CTGGAGAGCGTGCCGGAGGGTGAGAGAGAGGGGGACTTGGGGGGGGGGTA
CACATAGCCGTGCATGCCGTATTCGTTAGACTGCTGACCTCGCATCGCTA
CAAAGCCGGGATGGAGCACGCCGGGTACTCACCGGACCGGGCTCTCACAT
CACCGAGCGCGAAGCACCGTGAGGTATTCGGGGAGTCGCATGAAGGGTGC
GCTTCATCCTGTGTAGGATGTTCTGCATCTCGCGCTTGCTTCCTTGCATG
CGGGTGACGGCAACGGGGGAGCGGGGGGGGTGAATGATCGAGGGTAGCAA
AATGCAGCAGCAGGGACGGAACGCGAGGGAGGCTTCTGCACGAAACACAT
AAGAGACAGAGCGGTGGCACATTGGTAGGTCTACGTCAGATCTTCATATT
ACGCTCACCCGAGAACAACGATTGGCATGAACGCATGCGGTGTAAAGGTG
CACTGCTGCCAGATGGTTTACCTGCAACCTGAACATGAACAGAGCGTGCA
TTCGGCAGCACGCCCACGGCTTAAACCAATAAAAAGTCTGGCATTTCCCT
GGCTCAGTTGCTTGTTGGCTTTTCTTTCGGCTGTGGTACGTCGATGGCTC
GTTGTGTTTGCCGAATTTCACCGACGCTGAACGTATAACACCGAACCACT
GCGTTTTTTTTTTGTGGTGGCCATGTCGCTACTGCTCCCGCTGCCGGGGA
TTACGGGTGGCGGTTATTATTTCTCGGGGGTTGGATGGATGGCGCTGTCA
GACTATCGGGCGGCTGCTCGTCGGGCGGGGGGAGGCTTCGTGAACCACGA
CTTGTTCTGGAACGTGCTGTCGCCTTGGGGGGGACACCCTCCAGGGCAAG
AGTCTGATACTATCCAGGTGGGTTCTCGAGAGAGCAAGAGAGCGAGAATC
GAGGAAGTGTTTTTTTTGGCCCCATGTTGTTTTATGGTACTGGACGCGTG
GTGTTTGAGTTCTTGCTCCTCCTCCTCTTCCTCCTCCCGGTCGTTTAGGA
GAGAGTACGTAAGCCGGGCATCTGGCGGCACAAGGCGGCAATATGTAGCT
CGCGTCTTTCCGAGGGAGTTTGCGGTGAACAATCCCAGCTGAATCTTGTC
CGTCGAAAAGCTCGTGCCACGCGATGAAAAAAAGAATCGTGCCAAAGTTA
TTGCTTCACTTCCTGTTCCCGCTTGTTCCTGGCCTTGTGTACTGCCGCTG
CCGGCGCCGCGATTGGCGTGTTTGCGTCTGGGATTTGTATCGACCGCGCA
CATAGGCCAGCACGAGCAATGTGTTGCTTGTTTCCAATGACACCATGTGT
GTGTCTCCGTGTGTGTGTGTGCAGGAACGGCACCTGGCGGAGGCCATCGA
CCGTTCGTTCGGATCCTTCGCGGAGATGCAGTACGCCTTTTCCAATGCGG
CGTCCGCCTTCTCCGGCTCGGGGTAAGCAACTTCCTTCCTTCCTTTCAAC
CCTCCCCCCCCGTTCATTTCGCTCTACCGCTTTGTTATCGGAAATTGGCC
ATGGGCTAGGTTCGGCTGCTGCTGCTGCTTCTGCTGCTCGGCAGCTGGTA
CTGCTTGCCAGCTGGTGCTGGTGCTTGTTTGCTGCTGACCATCTGCTGCT
GCTCATTAGTCGCTGCCTGTCTGCTGCTGCTTGTCTGCTGCTGCTTGTTT
GCTGTCGAGCGAAGGTCGCTGCCAGCTCTCCCATTCGGAGGGCTGTGCAC
ACAGTTATACCACTTGCTCCCATGCCCCGGTCCCACCTTCTCGTGCCACC
ACCGTGGCGTGCTCACGCGTGCATCCGTCAACCATACACGTCTGTTGATT
TTTTCCTTTGTTCCGTCTCTCGCTTTATCGTACTGCCGAAATGCAGGTGG
GTGTTTCTGTACTTCAATCACGAGGAAAAGACCCTAGACGTGGTTGTCCT
AGAGTACGAGGACACGCCGGCCATGAACCCGAACACAACCCCCATCCTGC
TCCTGGACCTGTGGGAGCACGCCTACTATCTGGATGTGAGAGGCCTCGAG
AAACCGAACATGTTGACAGGCAGAACGGATGTGGGGGCAGGGGGAACATG
GCATTCACTCAATTCGTCGTGCTCCGAATATTTTTTTTGGCAGCGCGGGA
GGCAACACGGATGTGGGGGCAGGGAGTGGGACTTCCGTCATTGGTTGTCT
TTGCTGTTGTTCCATCATTTGCCAGGTATTATCTTTTTTCGTTTGGATCC
GACAACCTTGAGGGAAGGGCGTGAAGGGTGAAGGAAGAACGGAGCGGGGG
GGGGACTCGTTGGTTGAAGTTGAAACGAAGTATTTCCCTGTAGACATGTG
CGCCCTATCGCTACATTGGCACATGCAGCGATATGCAGCGATTGGTGTTG
GAGATCCACTTCTTTCGACCTTCCCATTGCCTTCTCTCACTCCGTCTCCT
GCTTCGTTCACACTCCCGCGATCTGTCCTGCGCTCGCCCGCTCGCCCCGC
TCTCACTTCCATATCCAATGTATCGGCGGATCACATCGGGAACCGCTGCT
GTGTCCCCCCCCGCTGATCCCGCTCACGCCCCCGACCCTCAGTACGAAAA
CCGCAAGGACGTGTACATCACCAACTTTTGGGCGTCGGTGGACTGGCCGA
GAGTGGCGACCCGCTACGCGGAGGCCTCTGGCGAAGTGGTCCCGGAGGCT
CTGCCCTCCCCTGAGAGGTAAGCGTCCACCATTGAGCAACATGCTGCAGT
TGGGGTTATGTCGGTTGTCTGGCGACAGGAAAGACACAGCCGGCCGGGGT
GGAAATTTTTCAGCACGGCATTGCTGCTGCGGGAGGACAAGCATGAGCAA
CGGCATTGCCATCGGAGTTGTTTTTTTCGGTTGCGGTATGCCATCCACGA
TAGTATAGGAACGGTGGTGGTAGAGGTGTCGGGTGACCCTGGTGGTAGCT
TCCCAAGGCGGGTAGCGAATCTTCCTCATAGGCGCATGATGAACATCAGA
GCACGTCTCACATCAGCGTGTCGTCGCGGGGTGGCAAGTTTGATGTGAAC
CCCCCGCCCCCCGCTCACAATTCGTATGTTCTTAAACGATGAGGGGGGTC
CGTTGACGGTTGCATCCCGTCTAGCCATCCCTTTTGCGTCGCTTCAACTC
TCCTGTCCTGACCCGTATCGATAGTTTGATAGCGTTCCACGATTCTCACG
ACATAAATGCCTTATTACTGTAGCCCCATCCCATGACATGGTTTACGATC
CGCGTTGCAAACGTACCCGTCATGTTCGTTTCATGTCTGATGCTGTGTGT
GCGCGTGTTCATCCGGCACACCAGGCGGGAGAAGGGAGCGGTTGGACTGA
CGCCGGCGTTGCAGGACGCGGACAAGGCGTTGTTGGCGGAGGACTGAGTA
GAGAGACAGCGGGGTGCAGAGACGGNGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGATACAGAGGAAAGCCCGGCTGACCT
AGAACATGTGAAGCCATGCCTAATACGAGCGTGTTCCCCAAGACACGAAA
TTTTTCGTTCCTTGAGGTCATGGCAACAGCGGGTCTGGCGCCGATGACAG
CAATGTGGAATAGGAGCACAGGGGGCGTGTTTGGGCAGGTTACTGGACAA
TGGGCGACTTATGGGTGCCAGAGGGGGAGGGGGAGTGAGGGCGGGTTTGT
TTTTGATGCTCTTGTTGCCGCTTAGATAGTGCGGAAGAGGCTTTGCGCCC
CTGATGCCGTTGTGCTTGTGCAGGCAACAAGTTGTTGTCGTGTCATACAA
CGCCCATTCGATTGTGTTGCAGGTGCGCGGCAAAGTGGGGAATGTAAAAT
ATAATATGTTCTTTGAACCTGGAGAGAGAAGGGAGAGAGAGAGAAGAGAT
GTTCACCATCGCGTTTGCGCCTCTCCAGCAACCGCAGCGCACAAATAGTC
TAGATTGGGTTAAGCTCCCTAGTTGGTGTGTTCGGACATCGGATACAACA
GCGAGCCGATTTTGCCCCAATGCTGGAACGGGCGAGGCAAATGCAGCTGT
AGTCAAGTGTTTTGTTCTACGAAGCACGTCGCATCAGAAAAACAGACCC back to topCoding sequence (CDS) from alignment at Scaffold_565:617825..624273+ >EsuBft1059_5a-0001 ID=EsuBft1059_5a-0001|Name=EsuBft1059_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=855bp|location=Sequence derived from alignment at Scaffold_565:617825..624273+ (Ectocarpus subulatus male Bft15b) ATGGCCATGAGGAAGAAGAGCTCGACGCCGATGCTGGTAGGACGATGCCT CGCCCTGTCTACGCTGGCCGCGGTTGGGACGAGCGCCCAGAACCTCCCCG TGCCTCCCCTCCCCTACTCGTACGGGTCCTTGGTGCCCTTCATCAGCGAA CACGCGTTGAGGGTCCACCACCTTGGACACCACGCCGCCTACACCTCGCA GCTGAACGCCGTGCTGGAGAGAATGCGTTGGGATCCGGAGCTGAAGCATC TGGCCAAGATGGGAGTAGACGAGCTGTTGCACAACCTGGAGAGCGTGCCG GAGGACTATCGGGCGGCTGCTCGTCGGGCGGGGGGAGGCTTCGTGAACCA CGACTTGTTCTGGAACGTGCTGTCGCCTTGGGGGGGACACCCTCCAGGGC AAGAGTCTGATACTATCCAGGAACGGCACCTGGCGGAGGCCATCGACCGT TCGTTCGGATCCTTCGCGGAGATGCAGTACGCCTTTTCCAATGCGGCGTC CGCCTTCTCCGGCTCGGGGTGGGTGTTTCTGTACTTCAATCACGAGGAAA AGACCCTAGACGTGGTTGTCCTAGAGTACGAGGACACGCCGGCCATGAAC CCGAACACAACCCCCATCCTGCTCCTGGACCTGTGGGAGCACGCCTACTA TCTGGATTACGAAAACCGCAAGGACGTGTACATCACCAACTTTTGGGCGT CGGTGGACTGGCCGAGAGTGGCGACCCGCTACGCGGAGGCCTCTGGCGAA GTGGTCCCGGAGGCTCTGCCCTCCCCTGAGAGGCGGGAGAAGGGAGCGGT TGGACTGACGCCGGCGTTGCAGGACGCGGACAAGGCGTTGTTGGCGGAGG ACTGA back to top
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