EsuBft1058_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1058_6a-0001
Unique NameEsuBft1058_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_273contigScaffold_273:334475..336740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV58439
ProteomeIdEsuBft1058_6
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR11439
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-noTM
Protein domainsIPR013103
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length1599
Hectar predicted targeting categoryother localisation
Evalue3.61e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_6aEsuBft1058_6aEctocarpus subulatus male Bft15bgeneScaffold_273 334475..336740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_6a-0001EsuBft1058_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_273 334520..336740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_6a-0001-exonagat-exon-91766Ectocarpus subulatus male Bft15bexonScaffold_273 334475..335147 +
EsuBft1058_6a-0001-exonagat-exon-91763Ectocarpus subulatus male Bft15bexonScaffold_273 335439..335883 +
EsuBft1058_6a-0001-exonagat-exon-91764Ectocarpus subulatus male Bft15bexonScaffold_273 335988..336006 +
EsuBft1058_6a-0001-exonEsuBft1058_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_273 336228..336410 +
EsuBft1058_6a-0001-exonagat-exon-91765Ectocarpus subulatus male Bft15bexonScaffold_273 336462..336740 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_6a-0001-exonagat-five_prime_utr-349Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_273 334475..334519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_6a-0001-cdsEsuBft1058_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_273 334520..335147 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1058_6a-0001 ID=EsuBft1058_6a-0001|Name=EsuBft1058_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1599bp|location=Sequence derived from alignment at Scaffold_273:334475..336740+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGGGCTTTCGAGGAAATAGGCGTTCTTGGGGGTCGGCAGAGGGGATGGC
CGGAGGCCCCGCAGCGGCAGCCGGAGCGGCGGCATCGGCGGCAGCTCCAA
CAGCGACCGCGGCGACCTCCGGTGGCAGTGTTCCCCCGCGGCGGCGGCGG
GGGGGATGGCCGGAGGCCCCGCGGTGGCGGCCGGAGCGGCGGCATCGGCG
GCAGCTCCAGCGGCGACGGAGCAGACCTCCGGTGGCAGTGTTCCTCCCGC
GGCGGCGGCGGGGGGGGGGATGGCCGGGGTTCCCCGCAGTGGCGGCAGGA
GCGGTAGCATCGGCGGAAACTCCGGCGGCGACGGAGCAGCGGCAGCGTGA
GCATATGACGGAGCCGGAGAGCATGGTGGAGAGCGGAGCAGCGCCCAGCG
CGGTGTTGGCGGAACTTGCGCGGATGGTGGGGGGGCCTTCGCGGGTGAGC
ACACCTGCGGCACCTGTTGCCACACCTGCCCCCGCGCACTCGGCGGCGAT
GGCATCGGACGGACTGTGGACGGAGATGGTGCATGAGGGCGGTACAGGCG
GACGTCGTCGGCAGGGGCAGCGGGAGTTTGTAGCGACCCCCGCAGTGACG
AGGTCGCAGGCGAAGCGAGATGGGTCGGGGCCGGGGACATTTGCTCTTCT
AGCCACGGAGGACGAGATCAAAGCCCGTGGGGTTGCGCAGCGTGAGGGTG
TTAACTTCTGTGAGACTTTCTCCCCGTGTCCTTCCATCACGAGCATTCGA
ATGCTAGACGCCATTGCCTGTGTGTTAGATTGGGACTTGTGCCATATCGA
TGCCGAGCAAGCCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATTC
GTCTTCCCCCTGGATGCGGTGCGCTTTCCTGTAAGGTCGTACGGTTGAGA
CAGAGTCTTTACGGTCTAAAGCAGGCGTCCCGCACATGGCATTATCACTT
GATGCGTGGCATGAAGAGTCTTGGTTTCGAGGCTTTTGCCGCCGATGCTT
TCGTGGTGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATC
CACGTAGACGACATATTCTCTGTCGGGCTCAAGAGCAGGTGCGATCAGTT
TGTTGTTGACCTCAACCGCGGAGAAGATCGTTGCCAAGCTGTAGCGGAGA
AGATCGTTGCCAAGTTCGGTGTGACGACGGACAAAGAGACACCTATGGTC
GTTGGGTTGAAGCTTGAGCAGTACGACGCCGACGAGCCCGATGTCGACGA
GCCTTTCCGGTCGCTAGTGGGACACTTGATGTGGCTGGCGAATCAGACTC
GCCCGAATGTTCTCAACGCGGCGGCTTTGCATGTGTTGATGTATGTTAGA
TTCACGAGCAAGTACGGGATTACTTTTCAAAGGGGCACGGTGGGAGGAGA
CCACATGGAACTTTTTGCCAACAAGGCAACCGAACGGCGGTTTGTTTCTG
GGGCACTAGTGATGTTCGCTGGTGCGTATGTGATGTATCTGTGTAGGACG
CAGAAGTGCGTCACCCTGTCTTCGACGGAAGCGGAGTACGTGGCGATGTC
TGATGGGATGAAGGAGGCACATCGACATCCGCCACCATTTCATCCGTGA
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protein sequence of EsuBft1058_6a-0001

>EsuBft1058_6 ID=EsuBft1058_6|Name=EsuBft1058_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=517bp
MAGGPAAAAGAAASAAAPTATAATSGGSVPPRRRRGGWPEAPRWRPERRH
RRQLQRRRSRPPVAVFLPRRRRGGGWPGFPAVAAGAVASAETPAATEQRQ
REHMTEPESMVESGAAPSAVLAELARMVGGPSRVSTPAAPVATPAPAHSA
AMASDGLWTEMVHEGGTGGRRRQGQREFVATPAVTRSQAKRDGSGPGTFA
LLATEDEIKARGVAQREGVNFCETFSPCPSITSIRMLDAIACVLDWDLCH
IDAEQAFVQSELDEVVFIRLPPGCGALSCKVVRLRQSLYGLKQASRTWHY
HLMRGMKSLGFEAFAADAFVVRLIESGVVTMVVVIHVDDIFSVGLKSRCD
QFVVDLNRGEDRCQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDV
DEPFRSLVGHLMWLANQTRPNVLNAAALHVLMYVRFTSKYGITFQRGTVG
GDHMELFANKATERRFVSGALVMFAGAYVMYLCRTQKCVTLSSTEAEYVA
MSDGMKEAHRHPPPFHP
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mRNA from alignment at Scaffold_273:334475..336740+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1058_6a-0001 ID=EsuBft1058_6a-0001|Name=EsuBft1058_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2266bp|location=Sequence derived from alignment at Scaffold_273:334475..336740+ (Ectocarpus subulatus male Bft15b)
CAGGGCTTTCGAGGAAATAGGCGTTCTTGGGGGTCGGCAGAGGGGATGGC
CGGAGGCCCCGCAGCGGCAGCCGGAGCGGCGGCATCGGCGGCAGCTCCAA
CAGCGACCGCGGCGACCTCCGGTGGCAGTGTTCCCCCGCGGCGGCGGCGG
GGGGGATGGCCGGAGGCCCCGCGGTGGCGGCCGGAGCGGCGGCATCGGCG
GCAGCTCCAGCGGCGACGGAGCAGACCTCCGGTGGCAGTGTTCCTCCCGC
GGCGGCGGCGGGGGGGGGGATGGCCGGGGTTCCCCGCAGTGGCGGCAGGA
GCGGTAGCATCGGCGGAAACTCCGGCGGCGACGGAGCAGCGGCAGCGTGA
GCATATGACGGAGCCGGAGAGCATGGTGGAGAGCGGAGCAGCGCCCAGCG
CGGTGTTGGCGGAACTTGCGCGGATGGTGGGGGGGCCTTCGCGGGTGAGC
ACACCTGCGGCACCTGTTGCCACACCTGCCCCCGCGCACTCGGCGGCGAT
GGCATCGGACGGACTGTGGACGGAGATGGTGCATGAGGGCGGTACAGGCG
GACGTCGTCGGCAGGGGCAGCGGGAGTTTGTAGCGACCCCCGCAGTGACG
AGGTCGCAGGCGAAGCGAGATGGGTCGGGGCCGGGGACATTTGCTCTTCT
AGCCACGGAGGACGAGATCAAAGGTCCATCGCCGAGCTTCCTGCACAGGG
CGTGGCTGACCCAGCCCTGCCGACGGGGCTGGTGTGCGACCTGGAGACGT
CTGAGACATACGGGGAGGCGCACGCGGGGCCACACCACCACATCTGGACC
AACGCCGAACGCAAGGAGTTTTTCGGGCTGAATGCAGTGGGCACCTTCGA
GGAGGTCGGGGCGGAATAGCAACGAGGGACGAACGTCATCTCCGCCAAGT
GGGTGTATTCATGGAAGGGAGACGAGTTTGGGAATACTGTGCGTTGCTAT
GGCTAGGTTGGTAGCCCGTGGGGTTGCGCAGCGTGAGGGTGTTAACTTCT
GTGAGACTTTCTCCCCGTGTCCTTCCATCACGAGCATTCGAATGCTAGAC
GCCATTGCCTGTGTGTTAGATTGGGACTTGTGCCATATCGATGCCGAGCA
AGCCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATTCGTCTTCCCC
CTGGATGCGGTGCGCTTTCCTGTAAGGTCGTACGGTTGAGACAGAGTCTT
TACGGTCTAAAGCAGGCGTCCCGCACATGGCATTATCACTTGATGCGTGG
CATGAAGAGTCTTGGTTTCGAGGCTTTTGCCGCCGATGCTTTCGTGGTGC
GTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACGTAGAC
GACATATTCTCTGTCGGGCTCAAGAGCAGGTGCGATCAGTTTGTTGTTGA
CCTCAACCGGTAAGTGCCCATTTCCAACCTTGGGGAACTGCGCTGGTATG
CGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGTGACTATTTCG
CAACAGGCTGTAGCGGAGAAGATCGTTGCCAAGTTCGGTGTGACGACGGA
CAAAGAGACACCTATGGTCGTTGGGTTGAAGCTTGAGCAGTACGACGCCG
ACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACTTGANT
GCGTCACCCTGTCTTTGACGGAAGCGGAGTACGTGGCGATGTCTGATGGG
ATGAAGGAGGCNTTCGTGACACGGTGTCGGGGACGGTGACTATTTCGCAG
CAGGCTGTAGCGGAGAAGATCGTTGCCAAGTTCGGTGTGACGACGGACAA
AGAGACACCTATGGTCGTTGGGTTGAAGCTTGAGCAGTACGACGCCGACG
AGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACTTGATGTGG
CTGGCGAATCAGACTCGCCCGAATGTTCTCAACGCGGTACGTGCCGTTGC
GAGGTATTCACACGCGCCGAAGCGACTGCACTGGCAGGCGGCTTTGCATG
TGTTGATGTATGTTAGATTCACGAGCAAGTACGGGATTACTTTTCAAAGG
GGCACGGTGGGAGGAGACCACATGGAACTTTTTGCCAACAAGGCAACCGA
ACGGCGGTTTGTTTCTGGGGCACTAGTGATGTTCGCTGGTGCGTATGTGA
TGTATCTGTGTAGGACGCAGAAGTGCGTCACCCTGTCTTCGACGGAAGCG
GAGTACGTGGCGATGTCTGATGGGATGAAGGAGGCACATCGACATCCGCC
ACCATTTCATCCGTGA
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Coding sequence (CDS) from alignment at Scaffold_273:334475..336740+

>EsuBft1058_6a-0001 ID=EsuBft1058_6a-0001|Name=EsuBft1058_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1554bp|location=Sequence derived from alignment at Scaffold_273:334475..336740+ (Ectocarpus subulatus male Bft15b)
ATGGCCGGAGGCCCCGCAGCGGCAGCCGGAGCGGCGGCATCGGCGGCAGC
TCCAACAGCGACCGCGGCGACCTCCGGTGGCAGTGTTCCCCCGCGGCGGC
GGCGGGGGGGATGGCCGGAGGCCCCGCGGTGGCGGCCGGAGCGGCGGCAT
CGGCGGCAGCTCCAGCGGCGACGGAGCAGACCTCCGGTGGCAGTGTTCCT
CCCGCGGCGGCGGCGGGGGGGGGGATGGCCGGGGTTCCCCGCAGTGGCGG
CAGGAGCGGTAGCATCGGCGGAAACTCCGGCGGCGACGGAGCAGCGGCAG
CGTGAGCATATGACGGAGCCGGAGAGCATGGTGGAGAGCGGAGCAGCGCC
CAGCGCGGTGTTGGCGGAACTTGCGCGGATGGTGGGGGGGCCTTCGCGGG
TGAGCACACCTGCGGCACCTGTTGCCACACCTGCCCCCGCGCACTCGGCG
GCGATGGCATCGGACGGACTGTGGACGGAGATGGTGCATGAGGGCGGTAC
AGGCGGACGTCGTCGGCAGGGGCAGCGGGAGTTTGTAGCGACCCCCGCAG
TGACGAGGTCGCAGGCGAAGCGAGATGGGTCGGGGCCGGGGACATTTGCT
CTTCTAGCCACGGAGGACGAGATCAAAGCCCGTGGGGTTGCGCAGCGTGA
GGGTGTTAACTTCTGTGAGACTTTCTCCCCGTGTCCTTCCATCACGAGCA
TTCGAATGCTAGACGCCATTGCCTGTGTGTTAGATTGGGACTTGTGCCAT
ATCGATGCCGAGCAAGCCTTTGTCCAATCAGAACTGGATGAGGTTGTGTT
CATTCGTCTTCCCCCTGGATGCGGTGCGCTTTCCTGTAAGGTCGTACGGT
TGAGACAGAGTCTTTACGGTCTAAAGCAGGCGTCCCGCACATGGCATTAT
CACTTGATGCGTGGCATGAAGAGTCTTGGTTTCGAGGCTTTTGCCGCCGA
TGCTTTCGTGGTGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTG
TGATCCACGTAGACGACATATTCTCTGTCGGGCTCAAGAGCAGGTGCGAT
CAGTTTGTTGTTGACCTCAACCGCGGAGAAGATCGTTGCCAAGCTGTAGC
GGAGAAGATCGTTGCCAAGTTCGGTGTGACGACGGACAAAGAGACACCTA
TGGTCGTTGGGTTGAAGCTTGAGCAGTACGACGCCGACGAGCCCGATGTC
GACGAGCCTTTCCGGTCGCTAGTGGGACACTTGATGTGGCTGGCGAATCA
GACTCGCCCGAATGTTCTCAACGCGGCGGCTTTGCATGTGTTGATGTATG
TTAGATTCACGAGCAAGTACGGGATTACTTTTCAAAGGGGCACGGTGGGA
GGAGACCACATGGAACTTTTTGCCAACAAGGCAACCGAACGGCGGTTTGT
TTCTGGGGCACTAGTGATGTTCGCTGGTGCGTATGTGATGTATCTGTGTA
GGACGCAGAAGTGCGTCACCCTGTCTTCGACGGAAGCGGAGTACGTGGCG
ATGTCTGATGGGATGAAGGAGGCACATCGACATCCGCCACCATTTCATCC
GTGA
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