EsuBft1058_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1058_5a-0001
Unique NameEsuBft1058_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_273contigScaffold_273:331567..334473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV12489-PA
ProteomeIdEsuBft1058_5
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR11439
Protein domainsSignalP-noTM
Protein domainsIPR001584
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR012337
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR001878
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl33208|Metazoa
Length245
Hectar predicted targeting categoryother localisation
Evalue2.09e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0015074
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_5aEsuBft1058_5aEctocarpus subulatus male Bft15bgeneScaffold_273 331567..334473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_5a-0001EsuBft1058_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_273 331618..334450 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_5a-0001-exonagat-exon-91761Ectocarpus subulatus male Bft15bexonScaffold_273 331567..332803 +
EsuBft1058_5a-0001-exonagat-exon-91762Ectocarpus subulatus male Bft15bexonScaffold_273 332851..333404 +
EsuBft1058_5a-0001-exonagat-exon-91760Ectocarpus subulatus male Bft15bexonScaffold_273 333640..334065 +
EsuBft1058_5a-0001-exonEsuBft1058_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_273 334232..334473 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_5a-0001-exonagat-five_prime_utr-348Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_273 331567..331617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_5a-0001-cdsEsuBft1058_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_273 331618..332803 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1058_5a-0001-exonagat-three_prime_utr-560Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_273 334451..334473 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1058_5a-0001 ID=EsuBft1058_5a-0001|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2459bp|location=Sequence derived from alignment at Scaffold_273:331567..334473+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGCAAACCCC
CATGCTCTTGTTGTGGGCCGTGGTTTCGGACACGGCGGCAACGGGGGGAG
CGGGGGGGGCCGGAGGCCAGCGGCCGAATGGCAACAACGGCGACGGCCGC
GGGCAACACTGGTCCTCTGGGGGCGGTGCTGTCCAACCGCAACAGCCGCA
GTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAGATGC
AACAGCCGTACCAACAGCCGCGGCAGGAGGTGCATATGCAACAGTCGTAC
CAACAGCCGCAACAGCAGATGCGACACCAACAGACGTACCAACCGCAGTC
GCAGATGCAGTCGCACCGGCAGCCGCAGCAGCAGCGGCAGCAGCAACAGC
CCGCTATGGACGGTGTTGGTGGCATCTACGATTGCGGTTGTAATGCCGTG
TATCATCAGCCGGAATCACCACCTCCACCTGGCGCGCCGATGGGCACAGT
GCACAGATGCGGCCGCTGTGGAAGGCACGGTCACCACGCCATAGATTGCG
CCGCCCCCCGCAGATTCGAGGGCACGTCCGGTGCGTGCGACCAGTACGGT
CACATGTGGCGCAACTGTGCCAAAAGCAACCGGCACCCCCACCTCAACGT
CGTCACTTCTGCTGGTGCCCTCGGTCCGGAGTACGCGTACACCACCGCGG
ATACATCGGCCGTCCAATTTCGTGATGTCCCGGCGGCCGATGGCGTATAC
TACAGTGACACCATGCTGGCCGGCGCTGGTGGCGGCGGCAACGGTGGTGG
TGGTGCTGGCGGTGGCGGCAGCGGCGGTGGCGATGGCGGTGGTGGCGGTG
GGGTGATCGTACAGCAGCAGGTCGTGACACCGGGCGAACCCTATTTGATT
TTGCCGACATTTTTCACGGCGGCGGCGGCGTGGAAGGTGAAAATGGCGGC
GGCAGCGGCGGTGGTGTGGCGGCGGGAGCGGGCCCTGAGGCGCTTCGCGA
CGGCGAGGGTACCTTCGGTGGCGGTCTCTTCGCGATGCACTTTGTCTGTT
CCGTTACCTCATCCCCCCCCGTGCGCAAAACATCCGACGTTTCCCACATC
GCCCGGGTTCGACGGTCTGCCTTGGAGACACCGGCGCCGTAGCCCACGTG
GTCCCTTCTGGGGAAAACGTGTACAACAGGCGCCCGCCGCTCCCGGAGGA
GCGACATCTCATGCTTGGCGACGGCAAGCACATCCCGAGGTTTTCGGTGA
CTTGGATGTGATCTTCCACTGCCCTGAGGACGTGCGCGTCACCCCGCACA
ATGTTGGTGTGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAG
ATCCAGGGTCGCCATGAGATAAAGCTTAACCGCCATGGAGCGTCGATCTT
GGGGGGGCGGGTGCGCATGACAAAATTCCCTTACGGGGATTACATCCAGG
GGACTCGCGTTGATCCACTGCCTCAAGGCGATTCACCTCCTCAGCCCCCC
GCGATGGTTGCGGTGATGCTACGGCCTGGCACGCAATCCAGCATCGACTA
CAACGCTCTTCACTGCTCCCTCGGTCATGCCAATTCCAAGACGCTGTACG
AGACCGCCAGGCAGATGGGTATCAAGGTGACCGGCACTCCGGAGTACTGC
GATGGATGTGCGGAGTCGAAGGCGATTCAGCGCTCGGTCCCCAAGGTCAT
CTCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCGATGGACC
TAGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACTACGTGATG
CAGATCCTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGCGGGA
GAAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGTATGCCTCCA
TCAAATCGCTCGTGGCTACTCACGGGGGGCTGGGCTGCGTTCTGATCGAC
AACGGCACCGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCTGGCGGAGCT
GAACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGAGCAACGGTC
GTGTGGAGCGGAGGATTGCACTAGTGATGGAGGGGGGCAAGGCTGCGTTT
CTGGAGTTCCCGAAGCTTTTCCCCGGAGTTATGTTCCCGACCAAGGCGCT
GTCCTTCCGGGCCATCTGGCCCGAGGCCTTCGCGTGGATGAACGACTCTC
TGAACATCGCAGCGGAGGTGAGCAAGGAAGACAAGCGGTGCCCGGAAGTT
AAGCTGTACGGCAGGAGGAGGATCCGAGTGCTTCTGCCGTTCATGATGCC
CGGCTTCCGTCACCGTCACCGCCCGTCCACGATGCACAGCAAGGGGGAGC
GGTGCTTCTATCTTAACTCAGGCCAGGATCATTCGTCGACGACGTACAAG
ATCAGCACGCCGACTGGGGTGCCCACCTACTCCTAACACTGCACCTTCGG
CTTCAGCAG
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protein sequence of EsuBft1058_5a-0001

>EsuBft1058_5 ID=EsuBft1058_5|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=794bp
MLLLWAVVSDTAATGGAGGAGGQRPNGNNGDGRGQHWSSGGGAVQPQQPQ
LQVQQYRQPQQPQRQMQQPYQQPRQEVHMQQSYQQPQQQMRHQQTYQPQS
QMQSHRQPQQQRQQQQPAMDGVGGIYDCGCNAVYHQPESPPPPGAPMGTV
HRCGRCGRHGHHAIDCAAPRRFEGTSGACDQYGHMWRNCAKSNRHPHLNV
VTSAGALGPEYAYTTADTSAVQFRDVPAADGVYYSDTMLAGAGGGGNGGG
GAGGGGSGGGDGGGGGGVIVQQQVVTPGEPYLILPTFFTAAAAWKVKMAA
AAAVVWRRERALRRFATARVPSVAVSSRCTLSVPLPHPPPCAKHPTFPTS
PGFDGLPWRHRRRSPRGPFWGKRVQQAPAAPGGATSHAWRRQAHPEVFGD
LDVIFHCPEDVRVTPHNVGVVPGLALDILSLNKIQGRHEIKLNRHGASIL
GGRVRMTKFPYGDYIQGTRVDPLPQGDSPPQPPAMVAVMLRPGTQSSIDY
NALHCSLGHANSKTLYETARQMGIKVTGTPEYCDGCAESKAIQRSVPKVI
SPSRRTTRPLERVAMDLAGPFGQSSGGAKYYVMQILDHHTNYGWICFLRE
KSSTNVVAAFRAWYASIKSLVATHGGLGCVLIDNGTEWVNAEFRGLLAEL
NITRELTAVDGPKSNGRVERRIALVMEGGKAAFLEFPKLFPGVMFPTKAL
SFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMP
GFRHRHRPSTMHSKGERCFYLNSGQDHSSTTYKISTPTGVPTYS
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mRNA from alignment at Scaffold_273:331567..334473+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1058_5a-0001 ID=EsuBft1058_5a-0001|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2907bp|location=Sequence derived from alignment at Scaffold_273:331567..334473+ (Ectocarpus subulatus male Bft15b)
TGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGCAAACCCC CATGCTCTTGTTGTGGGCCGTGGTTTCGGACACGGCGGCAACGGGGGGAG CGGGGGGGGCCGGAGGCCAGCGGCCGAATGGCAACAACGGCGACGGCCGC GGGCAACACTGGTCCTCTGGGGGCGGTGCTGTCCAACCGCAACAGCCGCA GTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAGATGC AACAGCCGTACCAACAGCCGCGGCAGGAGGTGCATATGCAACAGTCGTAC CAACAGCCGCAACAGCAGATGCGACACCAACAGACGTACCAACCGCAGTC GCAGATGCAGTCGCACCGGCAGCCGCAGCAGCAGCGGCAGCAGCAACAGC CCGCTATGGACGGTGTTGGTGGCATCTACGATTGCGGTTGTAATGCCGTG TATCATCAGCCGGAATCACCACCTCCACCTGGCGCGCCGATGGGCACAGT GCACAGATGCGGCCGCTGTGGAAGGCACGGTCACCACGCCATAGATTGCG CCGCCCCCCGCAGATTCGAGGGCACGTCCGGTGCGTGCGACCAGTACGGT CACATGTGGCGCAACTGTGCCAAAAGCAACCGGCACCCCCACCTCAACGT CGTCACTTCTGCTGGTGCCCTCGGTCCGGAGTACGCGTACACCACCGCGG ATACATCGGCCGTCCAATTTCGTGATGTCCCGGCGGCCGATGGCGTATAC TACAGTGACACCATGCTGGCCGGCGCTGGTGGCGGCGGCAACGGTGGTGG TGGTGCTGGCGGTGGCGGCAGCGGCGGTGGCGATGGCGGTGGTGGCGGTG GGGTGATCGTACAGCAGCAGGTCGTGACACCGGGCGAACCCTATTTGATT TTGCCGACATTTTTCACGGCGGCGGCGGCGTGGAAGGTGAAAATGGCGGC GGCAGCGGCGGTGGTGTGGCGGCGGGAGCGGGCCCTGAGGCGCTTCGCGA CGGCGAGGGTACCTTCGGTGGCGGTCTCTTCGCGATGCACTTTGTCTGTT CCGTTACCTCATCCCCCCCCGTGCGCAAAACATCCGACGTTTCCCACATC GCCCGGGTTCGACGGTCTGCCTTGGAGACACCGGCGCCGTAGCCCACGTG GTCCCTTCTGGGGAAAACGTGTACAACAGGCGCCCGCCGCTCCCGGAGGA GCGACATCTCATGCTTGGCGACGGCAAGCACATCCCGGTAGAGGTTTTCG GTGACGCTTGGCGACGGCAAGCACATCCCGGTAGAGGTTTTCGGTGACTT GGATGTGATCTTCCACTGCCCTGAGGACGTGCGCGTCACCCCGCACAATG TTGGTGTGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAGATC CAGGGTCGCCATGAGATAAAGCTTAACCGCCATGGAGCGTCGATCTTGGG GGGGCGGGTGCGCATGACAAAATTCCCTTACGGGGATTACATCCAGGGGA CTCGCGTTGATCCACTGCCTCAAGGCGATTCACCTCCTCAGCCCCCCGCG ATGGTTGCGGTGATGCTACGGCCTGGCACGCAATCCAGCATCGACTACAA CGCTCTTCACTGCTCCCTCGGTCATGCCAATTCCAAGACGCTGTACGAGA CCGCCAGGCAGATGGGTATCAAGGTGACCGGCACTCCGGAGTACTGCGAT GGATGTGCGGAGTCGAAGGCGATTCAGCGCTCGGTCCCCAAGGTCATCTC CCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCGATGGACCTAG CCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACGTGATGCAGATC CTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGCGGGAGAAGAG CNTCAAGGTGACCGGCACTCCGGAGTACTGCGATGGATGTGCGGAGTCGA AGGCGATCCAGCGCTCGGTCCCCAAGATCATCTCCCCCTCTCGCCGGACG ACGCGGCCGACCTCTTGAACGTGTCGCCATGGACCTAGCCGACCCCTTCG GCCAATCCAGCGGCGGTGCCAAGTACGTGATGCAGATCCTGGACCACCAT ACCAACTACGGATGGATTTGCTTTCTGCGGGAGAAGAGCAGTACAAACGT GGTTGCGGCCTTTCGTGCGTGGTATGCCTCCATCAAATCGCTCGTGGCTA CTCACGGGGGGCTGGGCTGCGTTCTGATCGACAACGGCACCGAGTGGGTC AACGCGGAGTTTCGGGGGCTGCTGGCGGAGCTGAACATTACGCGGGAGCT CACGGCGGTCGACGGGCCCAAGAGCAACGGTCGTGTGGAGCGGAGGATTG CACTAGTGATGGAGGGGGGCAAGGCTGCGTTTCTGGAGTTCCCGAAGCTT TTCCCCGGAGTTATGTTCCCGACCAAGGCGCTGTCCTTCCGGGCCATCTG GCCCGAGGCCTTCGCGTGGATGAACGACTCTCTGAACATCGCAGCGGAGG TGAGCAAGGAAGACAAGCGGTGCCCGGAAGTTAAGCTGTANGGCGTTTCT GGAATTCCCGAAGCTTTCCCCCGGAGTTACGTTCCCGACAAAGGTGCTGT CCTTCCGGACCATCTGGCCCGATGCCTTCGCGTGGATGAACGACTCTCTG AACATCGCAGCGGAGGTGAGCAAGGAAGACAAGCGGTGCCCGGAAGTTAA GCTGTACGGCAGGAGGAGGATCCGAGTGCTTCTGCCGTTCATGATGCCCG GCTTCCGTCACCGTCACCGCCCGTCCACGATGCACAGCAAGGGGGAGCGG TGCTTCTATCTTAACTCAGGCCAGGATCATTCGTCGACGACGTACAAGAT CAGCACGCCGACTGGGGTGCCCACCTACTCCTAACACTGCACCTTCGGCT TCAGCAG
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Coding sequence (CDS) from alignment at Scaffold_273:331567..334473+

>EsuBft1058_5a-0001 ID=EsuBft1058_5a-0001|Name=EsuBft1058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2385bp|location=Sequence derived from alignment at Scaffold_273:331567..334473+ (Ectocarpus subulatus male Bft15b)
ATGCTCTTGTTGTGGGCCGTGGTTTCGGACACGGCGGCAACGGGGGGAGC
GGGGGGGGCCGGAGGCCAGCGGCCGAATGGCAACAACGGCGACGGCCGCG
GGCAACACTGGTCCTCTGGGGGCGGTGCTGTCCAACCGCAACAGCCGCAG
TTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAGATGCA
ACAGCCGTACCAACAGCCGCGGCAGGAGGTGCATATGCAACAGTCGTACC
AACAGCCGCAACAGCAGATGCGACACCAACAGACGTACCAACCGCAGTCG
CAGATGCAGTCGCACCGGCAGCCGCAGCAGCAGCGGCAGCAGCAACAGCC
CGCTATGGACGGTGTTGGTGGCATCTACGATTGCGGTTGTAATGCCGTGT
ATCATCAGCCGGAATCACCACCTCCACCTGGCGCGCCGATGGGCACAGTG
CACAGATGCGGCCGCTGTGGAAGGCACGGTCACCACGCCATAGATTGCGC
CGCCCCCCGCAGATTCGAGGGCACGTCCGGTGCGTGCGACCAGTACGGTC
ACATGTGGCGCAACTGTGCCAAAAGCAACCGGCACCCCCACCTCAACGTC
GTCACTTCTGCTGGTGCCCTCGGTCCGGAGTACGCGTACACCACCGCGGA
TACATCGGCCGTCCAATTTCGTGATGTCCCGGCGGCCGATGGCGTATACT
ACAGTGACACCATGCTGGCCGGCGCTGGTGGCGGCGGCAACGGTGGTGGT
GGTGCTGGCGGTGGCGGCAGCGGCGGTGGCGATGGCGGTGGTGGCGGTGG
GGTGATCGTACAGCAGCAGGTCGTGACACCGGGCGAACCCTATTTGATTT
TGCCGACATTTTTCACGGCGGCGGCGGCGTGGAAGGTGAAAATGGCGGCG
GCAGCGGCGGTGGTGTGGCGGCGGGAGCGGGCCCTGAGGCGCTTCGCGAC
GGCGAGGGTACCTTCGGTGGCGGTCTCTTCGCGATGCACTTTGTCTGTTC
CGTTACCTCATCCCCCCCCGTGCGCAAAACATCCGACGTTTCCCACATCG
CCCGGGTTCGACGGTCTGCCTTGGAGACACCGGCGCCGTAGCCCACGTGG
TCCCTTCTGGGGAAAACGTGTACAACAGGCGCCCGCCGCTCCCGGAGGAG
CGACATCTCATGCTTGGCGACGGCAAGCACATCCCGAGGTTTTCGGTGAC
TTGGATGTGATCTTCCACTGCCCTGAGGACGTGCGCGTCACCCCGCACAA
TGTTGGTGTGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAGA
TCCAGGGTCGCCATGAGATAAAGCTTAACCGCCATGGAGCGTCGATCTTG
GGGGGGCGGGTGCGCATGACAAAATTCCCTTACGGGGATTACATCCAGGG
GACTCGCGTTGATCCACTGCCTCAAGGCGATTCACCTCCTCAGCCCCCCG
CGATGGTTGCGGTGATGCTACGGCCTGGCACGCAATCCAGCATCGACTAC
AACGCTCTTCACTGCTCCCTCGGTCATGCCAATTCCAAGACGCTGTACGA
GACCGCCAGGCAGATGGGTATCAAGGTGACCGGCACTCCGGAGTACTGCG
ATGGATGTGCGGAGTCGAAGGCGATTCAGCGCTCGGTCCCCAAGGTCATC
TCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCGATGGACCT
AGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACTACGTGATGC
AGATCCTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGCGGGAG
AAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGTATGCCTCCAT
CAAATCGCTCGTGGCTACTCACGGGGGGCTGGGCTGCGTTCTGATCGACA
ACGGCACCGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCTGGCGGAGCTG
AACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGAGCAACGGTCG
TGTGGAGCGGAGGATTGCACTAGTGATGGAGGGGGGCAAGGCTGCGTTTC
TGGAGTTCCCGAAGCTTTTCCCCGGAGTTATGTTCCCGACCAAGGCGCTG
TCCTTCCGGGCCATCTGGCCCGAGGCCTTCGCGTGGATGAACGACTCTCT
GAACATCGCAGCGGAGGTGAGCAAGGAAGACAAGCGGTGCCCGGAAGTTA
AGCTGTACGGCAGGAGGAGGATCCGAGTGCTTCTGCCGTTCATGATGCCC
GGCTTCCGTCACCGTCACCGCCCGTCCACGATGCACAGCAAGGGGGAGCG
GTGCTTCTATCTTAACTCAGGCCAGGATCATTCGTCGACGACGTACAAGA
TCAGCACGCCGACTGGGGTGCCCACCTACTCCTAA
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