EsuBft1058_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1058_4a-0001
Unique Name	EsuBft1058_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_273	contig	Scaffold_273:330439..331565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1058_4
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	112
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1058_4a	EsuBft1058_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_273 330439..331565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1058_4a-0001-exon	EsuBft1058_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_273 330439..331565 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1058_4a-0001-exon	agat-five_prime_utr-347	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_273 330439..330689 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1058_4a-0001-cds	EsuBft1058_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_273 330690..330980 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1058_4a-0001-exon	agat-three_prime_utr-559	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_273 330981..331565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1058_4a-0001	EsuBft1058_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_273 330690..330980 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_273:330439..331565+
coding sequence from alignment at Scaffold_273:330439..331565+

spliced messenger RNA

>EsuBft1058_4a-0001 ID=EsuBft1058_4a-0001|Name=EsuBft1058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1127bp|location=Sequence derived from alignment at Scaffold_273:330439..331565+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCTACCGCACCCAAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGG
GTACTGGCGTTTGAGCGGTGGGAGCTGGGCCATCGGGGCAGCGGACACCA
TTTTCATAGCTGGGATCGCGGCCGAAGGGGGCGAGGACAGCAGTGCATAG
CTGGTGCGGTGGCCATTGCGGGGACCGGGACGGCAGGGTTTATAGCTGGG
ACAGCGCTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGC
TATGTCTGGAACGGAGGAGGACGCAGCTCTGCGCGCTAGGTTGGATGAGG
CGCTACGAGCTCTAGATGTTGCCAAGGCTGAGACGAAGGAGGCCAAGGCT
GAGACGGAGGAACTAAGGGCAGCACAGCCGCGGTCGGCGGGTGCACCTGC
CGGCAGCAGCCCAGGAGGCAACGGTCTAGTTGCTCCTGGAGGGGCTTCAT
CTGCACCGATGAGGCCAATGTGGCCAGCCGGGTTAGTCATGACGGCGGTA
CTGGGGTGCCGGGTTTGCCTTTGGGAGGTACAATTTCCATAACTCCTGTG
CCTAGAATCCCGTCAAATTGCACCGCCGACACCTTTCTCAGTTGGCGGAA
ACGCTCTCTGGCCTACGTGGACAACCATAATCTCCAGCACACAATCTCCG
GCAGAGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGACT
CGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAATTT
ATCTTGGAGGCAGCGGTGGGGGCCCCAGTTGAGAACAACCTGTACTCTTG
CCATTCCGTGGCTGAAGCGTGGAGGATGATGGAGGGTTGGTTTCTGCCTA
ACCACCCAGCTGATCGTCAGCTTCTCGTGGCCGAGTTAGACAATGTAACC
ATGAATGAGGACCCCAAGCTGTTCTTCTCGAGCGTCGCACAACTGGAGAC
CCAGTTGCGGGCTGTGGGCATTGCTAAGGGTGAGCAGGAAGTTCTGCAGA
TCCTTGTGCGCCAACTCCCCGCACGCTACGATGTCGAGAAGCGCACCAGT
CTTTCCAAGCGTGACTCAACCCGCGCTGAGTTGCAGGACGTCGTGCGGGT
CGATACGCCATGCTCAAGGCCAGCGAG

protein sequence of EsuBft1058_4a-0001

>EsuBft1058_4 ID=EsuBft1058_4|Name=EsuBft1058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MSGTEEDAALRARLDEALRALDVAKAETKEAKAETEELRAAQPRSAGAPA
GSSPGGNGLVAPGGASSAPMRPMWPAGLVMTAVLGCRVCLWEVQFP

mRNA from alignment at Scaffold_273:330439..331565+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1058_4a-0001 ID=EsuBft1058_4a-0001|Name=EsuBft1058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1127bp|location=Sequence derived from alignment at Scaffold_273:330439..331565+ (Ectocarpus subulatus male Bft15b)
AGCTACCGCACCCAAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGG
GTACTGGCGTTTGAGCGGTGGGAGCTGGGCCATCGGGGCAGCGGACACCA
TTTTCATAGCTGGGATCGCGGCCGAAGGGGGCGAGGACAGCAGTGCATAG
CTGGTGCGGTGGCCATTGCGGGGACCGGGACGGCAGGGTTTATAGCTGGG
ACAGCGCTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGC
TATGTCTGGAACGGAGGAGGACGCAGCTCTGCGCGCTAGGTTGGATGAGG
CGCTACGAGCTCTAGATGTTGCCAAGGCTGAGACGAAGGAGGCCAAGGCT
GAGACGGAGGAACTAAGGGCAGCACAGCCGCGGTCGGCGGGTGCACCTGC
CGGCAGCAGCCCAGGAGGCAACGGTCTAGTTGCTCCTGGAGGGGCTTCAT
CTGCACCGATGAGGCCAATGTGGCCAGCCGGGTTAGTCATGACGGCGGTA
CTGGGGTGCCGGGTTTGCCTTTGGGAGGTACAATTTCCATAACTCCTGTG
CCTAGAATCCCGTCAAATTGCACCGCCGACACCTTTCTCAGTTGGCGGAA
ACGCTCTCTGGCCTACGTGGACAACCATAATCTCCAGCACACAATCTCCG
GCAGAGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGACT
CGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAATTT
ATCTTGGAGGCAGCGGTGGGGGCCCCAGTTGAGAACAACCTGTACTCTTG
CCATTCCGTGGCTGAAGCGTGGAGGATGATGGAGGGTTGGTTTCTGCCTA
ACCACCCAGCTGATCGTCAGCTTCTCGTGGCCGAGTTAGACAATGTAACC
ATGAATGAGGACCCCAAGCTGTTCTTCTCGAGCGTCGCACAACTGGAGAC
CCAGTTGCGGGCTGTGGGCATTGCTAAGGGTGAGCAGGAAGTTCTGCAGA
TCCTTGTGCGCCAACTCCCCGCACGCTACGATGTCGAGAAGCGCACCAGT
CTTTCCAAGCGTGACTCAACCCGCGCTGAGTTGCAGGACGTCGTGCGGGT
CGATACGCCATGCTCAAGGCCAGCGAG

Coding sequence (CDS) from alignment at Scaffold_273:330439..331565+

>EsuBft1058_4a-0001 ID=EsuBft1058_4a-0001|Name=EsuBft1058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_273:330439..331565+ (Ectocarpus subulatus male Bft15b)
ATGTCTGGAACGGAGGAGGACGCAGCTCTGCGCGCTAGGTTGGATGAGGC
GCTACGAGCTCTAGATGTTGCCAAGGCTGAGACGAAGGAGGCCAAGGCTG
AGACGGAGGAACTAAGGGCAGCACAGCCGCGGTCGGCGGGTGCACCTGCC
GGCAGCAGCCCAGGAGGCAACGGTCTAGTTGCTCCTGGAGGGGCTTCATC
TGCACCGATGAGGCCAATGTGGCCAGCCGGGTTAGTCATGACGGCGGTAC
TGGGGTGCCGGGTTTGCCTTTGGGAGGTACAATTTCCATAA