EsuBft1057_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1057_8a-0001
Unique NameEsuBft1057_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:651142..652135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1057_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length81
Hectar predicted targeting categoryother localisation
Evalue8.67e-119
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_8aEsuBft1057_8aEctocarpus subulatus male Bft15bgeneScaffold_246 651142..652135 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_8a-0001-exonEsuBft1057_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 651142..651604 +
EsuBft1057_8a-0001-exonagat-exon-50913Ectocarpus subulatus male Bft15bexonScaffold_246 651780..652135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_8a-0001-cdsEsuBft1057_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 651142..651604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_8a-0001EsuBft1057_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 651142..652135 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1057_8a-0001 ID=EsuBft1057_8a-0001|Name=EsuBft1057_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=819bp|location=Sequence derived from alignment at Scaffold_246:651142..652135+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTTCGGAGTGCACGGACGGACGAGGTGCAGCCAGTTGATGCAGG
AGCCGGACGATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGC
TCGACCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCT
TCTGATCGGCGCGTCCTGATCATCACTCAGTGGATGGGAGCGGCCATGGC
AAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCG
GGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAATCACCTTGGAG
GGTTTGGACAAGCCGTATACCTTCGCAAACGATGAAGACGGTAGCGACGA
CGAGCAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGG
AGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAT
GAAGACGACGGCGACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCT
GGACGACGACGACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGG
GAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAAACCCGTTGTT
CTTGACAGATTGCTTTTGCAGCGTGGAGTGCTCGTTAGGCTGGGCATGGG
GTGCTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGACACTCGCCACC
TGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCACAAGATG
AAGTTGCCCTTAAACAAGTACAGCGGAGATTCGGATGCGGCTTTAGGCTC
CTGTTTTTTGTTTTCTTAA
back to top

protein sequence of EsuBft1057_8a-0001

>EsuBft1057_8 ID=EsuBft1057_8|Name=EsuBft1057_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MALRSARTDEVQPVDAGAGRFLKVEVGRQMDIWLDQSDNLERWETASLTA
SDRRVLIITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLE
GLDKPYTFANDEDGSDDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSD
EDDGDISQPQTDELALLDDDDSMDPQDPEDEIQGMEIPAGFRIQEAKPVV
LDRLLLQRGVLVRLGMGCFGGLITQQSQKDTRHLYDYCVQLELDQSTHKM
KLPLNKYSGDSDAALGSCFLFS
back to top

mRNA from alignment at Scaffold_246:651142..652135+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1057_8a-0001 ID=EsuBft1057_8a-0001|Name=EsuBft1057_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=994bp|location=Sequence derived from alignment at Scaffold_246:651142..652135+ (Ectocarpus subulatus male Bft15b)
ATGGCCCTTCGGAGTGCACGGACGGACGAGGTGCAGCCAGTTGATGCAGG
AGCCGGACGATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGC
TCGACCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCT
TCTGATCGGCGCGTCCTGATCATCACTCAGTGGATGGGAGCGGCCATGGC
AAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCG
GGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAATCACCTTGGAG
GGTTTGGACAAGCCGTATACCTTCGCAAACGATGAAGACGGTAGCGACGA
CGAGCAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGG
AGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAT
GAAGACGACGGCGGTAAGTTTGTTTTGCACAAAACCAACTCTTCATCTTC
TTTTTGTTGATGATGATGTCCTTCATGTTGACGTTAGCTTGTTTCAGCGC
ACGGCTACACTCAAATTATGATAAGTTCAGGTTGAGTTTGGCGACGTGAC
ACCCTAACTTGTTGTGTTTCCCGTTGCCTCGTTCGCAGACATCTCTCAAC
CCCAGACCGACGAGCTAGCTCTTCTGGACGACGACGACAGCATGGACCCA
CAAGACCCGGAGGATGAGATACAGGGAATGGAGATCCCGGCAGGCTTTCG
TATTCAAGAAGCTAAACCCGTTGTTCTTGACAGATTGCTTTTGCAGCGTG
GAGTGCTCGTTAGGCTGGGCATGGGGTGCTTTGGAGGGCTGATCACTCAA
CAATCTCAGAAGGACACTCGCCACCTGTACGACTACTGTGTGCAGCTGGA
GCTAGACCAGAGTACGCACAAGATGAAGTTGCCCTTAAACAAGTACAGCG
GAGATTCGGATGCGGCTTTAGGCTCCTGTTTTTTGTTTTCTTAA
back to top

Coding sequence (CDS) from alignment at Scaffold_246:651142..652135+

>EsuBft1057_8a-0001 ID=EsuBft1057_8a-0001|Name=EsuBft1057_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_246:651142..652135+ (Ectocarpus subulatus male Bft15b)
ATGGCCCTTCGGAGTGCACGGACGGACGAGGTGCAGCCAGTTGATGCAGG
AGCCGGACGATTTCTCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGC
TCGACCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCT
TCTGATCGGCGCGTCCTGATCATCACTCAGTGGATGGGAGCGGCCATGGC
AAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCG
GGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAATCACCTTGGAG
GGTTTGGACAAGCCGTATACCTTCGCAAACGATGAAGACGGTAGCGACGA
CGAGCAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGG
AGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGAT
GAAGACGACGGCGACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCT
GGACGACGACGACAGCATGGACCCACAAGACCCGGAGGATGAGATACAGG
GAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAAACCCGTTGTT
CTTGACAGATTGCTTTTGCAGCGTGGAGTGCTCGTTAGGCTGGGCATGGG
GTGCTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGACACTCGCCACC
TGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCACAAGATG
AAGTTGCCCTTAAACAAGTACAGCGGAGATTCGGATGCGGCTTTAGGCTC
CTGTTTTTTGTTTTCTTAA
back to top