EsuBft1057_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1057_7a-0001
Unique Name	EsuBft1057_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:630514..633499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1057_7
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	163
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_7a	EsuBft1057_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 630514..633499 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_7a-0001	EsuBft1057_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 630514..632514 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_7a-0001-exon	EsuBft1057_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 630514..630531 +
EsuBft1057_7a-0001-exon	agat-exon-50911	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 630616..630772 +
EsuBft1057_7a-0001-exon	agat-exon-50910	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 631820..633167 +
EsuBft1057_7a-0001-exon	agat-exon-50912	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 633388..633499 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_7a-0001-cds	EsuBft1057_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 630514..630531 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_7a-0001-exon	agat-three_prime_utr-554	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 632515..633167 +
EsuBft1057_7a-0001-exon	agat-three_prime_utr-555	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 633388..633499 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:630514..633499+
coding sequence from alignment at Scaffold_246:630514..633499+

spliced messenger RNA

>EsuBft1057_7a-0001 ID=EsuBft1057_7a-0001|Name=EsuBft1057_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1635bp|location=Sequence derived from alignment at Scaffold_246:630514..633499+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGTCGGTCAGGAGACCTTTGCTGATCGTCTCTCAGCAATAACAAG
CAACTTTCCCATCTCAACGTGGTCGTGGACAAGCGTGTCAACGACAGAAC
CTTCATTTATCTCTAGAAGCAAGCTACCGCTCACGGCATCACTCCTTGAA
ACTTGGCGTCAGCTGGTATTACACGAGGACACCATGTCCAGCGGCAAAGT
GGAACTCCTGGGCGACAATGTAGAAATCGTCGACTACGAACCCGAGGGCA
AGGCTCCCACCGCAGAGCAGTTTCCAGCGGCGGGTGCAGAAGACGAGAGC
CCCCCCATGTCCATGGTGTTCACCGTCGACGATTTGCTGGACAACATCGC
CACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCT
CTCTGGAGGATATCGTAGAAGCGGCCCATCTGTCGTCCGATTTCCCCCCT
TTCGTTCCTCCTTTCTCGCTCCCGCCGGAAAACAGATTAATCCTCTTGCC
CCACGACGAGTATATGTCGTACCAAAGGTTGAGCGAGATGTGGTGCGACG
GTCTTGCCTGGAAGATAGCAGAGGTGGAGGCGCGAGAGCAGGCGAAGCGC
GAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTAGCCGCTGCGGC
GAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCCGGCTGCCGCGGCGAGGA
AGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAG
GAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTGAGGCGTATCTCCAAGC
GGCTAGGGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGAGC
CCCGCCACCAGGACCCGTGAGCAGCCCCCCACCCCCGTCGCCGTGTTATC
GTCCCCCCCCCCACGCAATCCCAGGTGCACCTTGGTTCCCATCGTACCGC
TTCGCCGCACGAGAAGGAGCGGGAGGTGGCAGCTTCTCCGACGAACGAGA
AGGAGCGGAAGAGGACAGCGACTCCGGAGTTTTCGGTGACTTTGGGTCTT
CCGGCCGGTGCTGAAGACGGAGCATCGTTTGCGGCGGCAACCACGGTGTA
CGAGTTCCACGTTGGAGATACAGCGTTCCTGTCCCGCCCGCTGGAGATGC
CTGCAGAAGGTGTCACCCTCCACGATGAGGACAGATTGGCAGCTCTTTTT
GCATGGGCTGGCATCAAACAACTTGTCCGTGCACAATTCCCCCCACCGCA
CACCGTTGCTTTCGGGCATATCTACCACACACCGTACCTCGCGAAACTTC
CGCCTTCTTCGCGGCAGTCCGTGTTCCAGCTGTTGTTCGCTCTCCGTCGT
GCCACCTTTCCTAAAGGTCCTCAAGGAACGTCGGTGGTGACCCAGGAGGA
AGGACATCAGCTGCCTCTTGCTCGTGCTGCTTCGACCAACGACTTCAAGC
ACGATCTACAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACACGGTTCT
GGAGAGGACAAGGACTTCAGTAGGTCGGCGGCTCTGGTGTCCAAGAGCTG
GAAGAACCGTTGGGGCGACCGGGGTTCGACGGCCAAGAGCGGGACGGACG
ACCACCACCGCTCCACCCAGTCTTCGCGAGGGCGC

protein sequence of EsuBft1057_7a-0001

>EsuBft1057_7 ID=EsuBft1057_7|Name=EsuBft1057_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=289bp
MRVGQETFADRLSAITSNFPISTWSWTSVSTTEPSFISRSKLPLTASLLE
TWRQLVLHEDTMSSGKVELLGDNVEIVDYEPEGKAPTAEQFPAAGAEDES
PPMSMVFTVDDLLDNIATADPAELERAYNTGRVSLEDIVEAAHLSSDFPP
FVPPFSLPPENRLILLPHDEYMSYQRLSEMWCDGLAWKIAEVEAREQAKR
EDAERLAEREAALAAAARKQEEEREAVPAAAARKQEEEREAALAAAARKQ
EEERAAVLAEREAYLQAARAKQGALRSRLKELEPRHQDP

mRNA from alignment at Scaffold_246:630514..633499+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1057_7a-0001 ID=EsuBft1057_7a-0001|Name=EsuBft1057_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2986bp|location=Sequence derived from alignment at Scaffold_246:630514..633499+ (Ectocarpus subulatus male Bft15b)
ATGCGGGTCGGTCAGGAGGTTTACCCTTCTGACCCCTACCCCCTTAGAAT
TGTCTACTCTGTGTACCCCCTGAGATGAAGTTGGATCCCCACTTCATCCC
AGACCTTTGCTGATCGTCTCTCAGCAATAACAAGCAACTTTCCCATCTCA
ACGTGGTCGTGGACAAGCGTGTCAACGACAGAACCTTCATTTATCTCTAG
AAGCAAGCTACCGCTCACGGCATCACTCCTTGAAACTTGGCGTCAGCTGG
TATTACACGGTAAGCGAGTGCTGGACGCGGCCTCCACACTGCTGTGTGTT
GTTGCTACGCTTTTTTCACAACCACCGGGTTGCTAGCTATTTGATCTCAC
CACCCACGAGAATCTAGACTCAGCCTCTGCTCTGCTTCCTCTCCTGTAGA
GATGCTGGCTTGTGATGCTTTTGCGAAGCGCCCGCGGGACTGGGACCTTG
CAAAGGATACGCGCCTCGGAGGCCATCGCGATGTTTTGGGTGATTTTTCG
TACGTTCGCCGTCCCTCGAAAGCTATTTTGTCTGCATCGGCGGTCCATGA
AGTGATTTCTGTGGCGGATACCCTCTGCATGGAGCGTCCTGAGTTGCTGG
CCTTGTGTAGTGGGACCCGAGATGACAGCATGCTTCCCACGTCTGCTACC
ACCTCTACTGCATTCATGCCGGCGTACCGGCCGATGTCCGCGGATTTTCC
TGTTATGCTGTCCGATTTGACTCCGCTTGTATCGACTTGGAACCCGATGT
GTGCACACGAATTGGGTGTCAGCCGCCCCACCAGCCTTCCCTCCAATTTT
CGAAATCACATGGCACTATTTTTCGGGGAATCGTTCACCCTCAAAAGCAT
TTGAATCGGAAACCTTTCAACAGCGCAAACCCACAGCTGTATTTGCTCGC
ACTTCGGTACCAGTTGCGGAGGAACGCCGTGCTGCTCTGCGTGTCTTTTG
GTCGGAAAAACTCGTGTCTCCATGCAACACGGGCCCTTTTGTGCTAGCTT
CTACTGCTGTTTGTGCGTGGCATGGTGTGCTTTTGGACGCTTTTCCTGCT
TGGTTGGATCCGCTTCAACCTCGTGTGCACCAAGCTTTTATCACTGGGCG
TATGCTATCTTGTGGATATCTCCGCCTTTCGCATGGACCTCGGCTTGCTC
TTCCCGAAGTTGCACCCGGCTTTACTGCTTCTGCTGCTCTTGGTGCTGCG
GCCTCAACTGCGGTTGGTTATCCTACATCTACTGTTTCTGGCCCTGCTGC
CCTTTCCAAAATCGATCGTAACTACCCTCTCTCTGGCCCTGTTCTTGTTA
ACAAAGAGGACACCATGTCCAGCGGCAAAGTGGAACTCCTGGGCGACAAT
GTAGAAATCGTCGACTACGAACCCGAGGGCAAGGCTCCCACCGCAGAGCA
GTTTCCAGCGGCGGGTGCAGAAGACGAGAGCCCCCCCATGTCCATGGTGT
TCACCGTCGACGATTTGCTGGACAACATCGCCACAGCAGATCCGGCGGAA
CTGGAGCGGGCCTACAACACCGGACGTGTCTCTCTGGAGGATATCGTAGA
AGCGGCCCATCTGTCGTCCGATTTCCCCCCTTTCGTTCCTCCTTTCTCGC
TCCCGCCGGAAAACAGATTAATCCTCTTGCCCCACGACGAGTATATGTCG
TACCAAAGGTTGAGCGAGATGTGGTGCGACGGTCTTGCCTGGAAGATAGC
AGAGGTGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGG
CGGAACGGGAGGCTGCTCTAGCCGCTGCGGCGAGGAAGCAGGAGGAGGAG
CGTGAGGCTGTTCCGGCTGCCGCGGCGAGGAAGCAGGAGGAGGAACGTGA
GGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGCGGCTG
TTCTGGCGGAGCGTGAGGCGTATCTCCAAGCGGCTAGGGCGAAGCAGGGG
GCGCTCCGATCGCGGCTGAAGGAGCTGGAGCCCCGCCACCAGGACCCGTG
AGCAGCCCCCCACCCCCGTCGCCGTGTTATCGTCCCCCCCCCCACGCAAT
CCCAGGTGCACCTTGGTTCCCATCGTACCGCTTCGCCGCACGAGAAGGAG
CGGGAGGTGGCAGCTTCTCCGACGAACGAGAAGGAGCGGAAGAGGACAGC
GACTCCGGAGTTTTCGGTGACTTTGGGTCTTCCGGCCGGTGCTGAAGACG
GAGCATCGTTTGCGGCGGCAACCACGGTGTACGAGTTCCACGTTGGAGAT
ACAGCGTTCCTGTCCCGCCCGCTGGAGATGCCTGCAGAAGGTGTCACCCT
CCACGATGAGGACAGATTGGCAGCTCTTTTTGCATGGGCTGGCATCAAAC
AACTTGTCCGTGCACAATTCCCCCCACCGCACACCGTTGCTTTCGGGCAT
ATCTACCACACACCGTACCTCGCGAAACTTCCGCCTTCTTCGCGGCAGTC
CGTGTTCCAGCTGTTGTTCGCTCTCCGTCGTGCCACCTTTCCTAAAGGTC
CTCAAGGAACGTCGGTGGTGACCCAGGAGGAAGGACATCAGCTGCCTCTT
GCTCGTGCTGCTTCGACCAACGACTTCAAGCACGATCTACAAGCCCCCCG
GCAGGCCTCTTCACGCCCTGCACACGGTTCTGGAGAGGACAAGGACTTCA
GTAGGTCGGCGGCTCTGGTGTCCAAGAGCTGGAAGAACCGTTGGGGCGAC
CGGGGTTCGACGGCCAAGAGCGGGACGGACGACCACCACCGCTCCACCCA
GTCTTNATCAGCTGCCTCTTGCTCGTGCTGCTTCGACCAACGACTTCAAG
CACGATCTACAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACACGGTTC
TGGAGAGGACAAGGACTTCAGTAGGTCGGCGGCTCTGGTGTCCAAGAGCT
GGAAGAACCGTTGGGGCGACCGGGGTTCGACGGCCAAGAGCGGGACGGAC
GACCACCACCGCTCCACCCAGTCTTCGCGAGGGCGC

Coding sequence (CDS) from alignment at Scaffold_246:630514..633499+

>EsuBft1057_7a-0001 ID=EsuBft1057_7a-0001|Name=EsuBft1057_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=870bp|location=Sequence derived from alignment at Scaffold_246:630514..633499+ (Ectocarpus subulatus male Bft15b)
ATGCGGGTCGGTCAGGAGACCTTTGCTGATCGTCTCTCAGCAATAACAAG
CAACTTTCCCATCTCAACGTGGTCGTGGACAAGCGTGTCAACGACAGAAC
CTTCATTTATCTCTAGAAGCAAGCTACCGCTCACGGCATCACTCCTTGAA
ACTTGGCGTCAGCTGGTATTACACGAGGACACCATGTCCAGCGGCAAAGT
GGAACTCCTGGGCGACAATGTAGAAATCGTCGACTACGAACCCGAGGGCA
AGGCTCCCACCGCAGAGCAGTTTCCAGCGGCGGGTGCAGAAGACGAGAGC
CCCCCCATGTCCATGGTGTTCACCGTCGACGATTTGCTGGACAACATCGC
CACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGTGTCT
CTCTGGAGGATATCGTAGAAGCGGCCCATCTGTCGTCCGATTTCCCCCCT
TTCGTTCCTCCTTTCTCGCTCCCGCCGGAAAACAGATTAATCCTCTTGCC
CCACGACGAGTATATGTCGTACCAAAGGTTGAGCGAGATGTGGTGCGACG
GTCTTGCCTGGAAGATAGCAGAGGTGGAGGCGCGAGAGCAGGCGAAGCGC
GAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTAGCCGCTGCGGC
GAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCCGGCTGCCGCGGCGAGGA
AGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAG
GAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTGAGGCGTATCTCCAAGC
GGCTAGGGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGAGC
CCCGCCACCAGGACCCGTGA