EsuBft1057_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1057_6a-0001
Unique Name	EsuBft1057_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:625307..626848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7029.ACYPI088512-PA
ProteomeId	EsuBft1057_6
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	IPR013103
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	PTHR11439
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1542
Hectar predicted targeting category	other localisation
Evalue	5.47e-56
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,41ZUZ@6656\|Arthropoda,3SKEY@50557\|Insecta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824
GO	0097159
GO	1901363
GO	0044424
GO	0090304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_6a	EsuBft1057_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 625307..626848 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_6a-0001-exon	EsuBft1057_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 625307..626848 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_6a-0001-exon	agat-five_prime_utr-346	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_246 625307..625357 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_6a-0001-cds	EsuBft1057_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 625358..626374 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_6a-0001-exon	agat-three_prime_utr-553	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_246 626375..626848 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1057_6a-0001	EsuBft1057_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 625358..626374 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:625307..626848+
coding sequence from alignment at Scaffold_246:625307..626848+

spliced messenger RNA

>EsuBft1057_6a-0001 ID=EsuBft1057_6a-0001|Name=EsuBft1057_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1542bp|location=Sequence derived from alignment at Scaffold_246:625307..626848+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCTACAAGAGGCTAGTGTCGGAGCTGAAGAGGATTGGTTTCGAGCAGTC
TATGTCTGACCCCTGTGTCCTGCGTTTCATGATGGGAGACGAGGTGGTGG
GGATGGTCGCGATTCATGTGGATGACATTCTGTATGCAGGAACGAAGAGT
CTGGCTGAGGTTGTAGTGGCAGCGCTTGGTGACTCTCTTCCGACGAAGAA
CTTGGGCGAGGTCAAGTTCTTTCTTGGTTGCGAATACATTCGCGACCGCA
AGGCTGGTACGATCGAGATTTCTCAGGAGAGCTACATCAGGAGTGTCCTT
GAGAGGTTCAACATTGTTCGCACTAGTTCAATCCCTGCTTCCCTTAACAA
CGATGACAGGTCCTTGATGGAGGAGGAGGGGGCAGGAGATGTGCCGTTCC
GTGAGGTGGTTGGAAGCCTGATGTGGATCGCCAGCCAGACGCGAGCCGAC
ATCTCTAACGCTGTGCGGGCTGTGGCGAGGCACTCTCACGAGCCAAAGAA
GAGCCACTGGAAGGCGGCCCAGAAGATCCTCAATTATCTTCTGGAAACGG
CACATCTGACTTTGAAGTTCAAGCGTGATAGTTCGGTAGACGTAGGCACG
TTGGTGTACGTAGATGCGGACTTCGCGAGTAAGGCTACAGACCGTAGGTC
AGTTTCAGGAGCAATGGTTTTTGTGGCTGCTATGCTTGTAGTTTGGATTT
CTAGGACGCAGAAATGCGTTTCGCAGTCGACTTCTGAGGCAGAGTACCTT
GCGATGGGTGATGGTGTGAAGGAGGCTCTGTTTGTAAATGGAATGCTTCA
GTTCCTGCGGCCGAGTGTGAAGCCGCGTAAGATAGACGTCCTTGAGGACA
ACGAAGGAGCGATTGCGCTCGCAGAAAACCCGCTGAGCTCGAGTAGGAGT
AAGCACATCGACGTGAGGCATCACTTCCTTAGGAATTTGACGGAGGAAGG
TGTGATCGAGGTCACGCATGTCCCAAGTAAGGAGCAGCATGCGGACATCC
TCACGAAGGCTCTACCGAGAGACCTTTTTGAAGTTCACCGTGACTTTGCA
TTGGGATCTAGGAAGTAGGAGTCTGAATTGTTTTGTTGTTTTGCTTTGAT
ACTTGATGTACTTGGTCTGGTTGATACAACAGCCCCTAGGGAGGGTGTTC
GTGGTAGAGGCAGTATGTATCGACTGAGTTGCGTAGAATATCTGATTGGA
CGATTTGAATACGCGGAACAATGTCGATCCTCTGTAGATTGTTGAGCTAC
CGACATAAGGAACGTTCGTGGTCCTTGTGGTTGGAATAATCTTGTGGACG
CTGCGCTAGTCTGAGCATGGTATCTTAGTTCAGGTAATCATCCCGAGAGT
TTGTGGAGTGTAGGAAGTCGCAATGGTCCGAGGACTGGTACTGAGATACT
GTAGAACGTTGCTGGTGCTCCGGAACGGTTCCGGAACGTGTCCGTTGGTT
CGTTGGTTTCCAGGAGTTCGCAGGGTATCGAGGACACGGCTTGCACATCG
TGCTCACTCCACTTTCTGACCAGTCTCTCCTGACAAGGGTCT

protein sequence of EsuBft1057_6a-0001

>EsuBft1057_6 ID=EsuBft1057_6|Name=EsuBft1057_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=338bp
MSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKN
LGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNN
DDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKK
SHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRS
VSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQ
FLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG
VIEVTHVPSKEQHADILTKALPRDLFEVHRDFALGSRK

mRNA from alignment at Scaffold_246:625307..626848+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1057_6a-0001 ID=EsuBft1057_6a-0001|Name=EsuBft1057_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1542bp|location=Sequence derived from alignment at Scaffold_246:625307..626848+ (Ectocarpus subulatus male Bft15b)
TTCTACAAGAGGCTAGTGTCGGAGCTGAAGAGGATTGGTTTCGAGCAGTC
TATGTCTGACCCCTGTGTCCTGCGTTTCATGATGGGAGACGAGGTGGTGG
GGATGGTCGCGATTCATGTGGATGACATTCTGTATGCAGGAACGAAGAGT
CTGGCTGAGGTTGTAGTGGCAGCGCTTGGTGACTCTCTTCCGACGAAGAA
CTTGGGCGAGGTCAAGTTCTTTCTTGGTTGCGAATACATTCGCGACCGCA
AGGCTGGTACGATCGAGATTTCTCAGGAGAGCTACATCAGGAGTGTCCTT
GAGAGGTTCAACATTGTTCGCACTAGTTCAATCCCTGCTTCCCTTAACAA
CGATGACAGGTCCTTGATGGAGGAGGAGGGGGCAGGAGATGTGCCGTTCC
GTGAGGTGGTTGGAAGCCTGATGTGGATCGCCAGCCAGACGCGAGCCGAC
ATCTCTAACGCTGTGCGGGCTGTGGCGAGGCACTCTCACGAGCCAAAGAA
GAGCCACTGGAAGGCGGCCCAGAAGATCCTCAATTATCTTCTGGAAACGG
CACATCTGACTTTGAAGTTCAAGCGTGATAGTTCGGTAGACGTAGGCACG
TTGGTGTACGTAGATGCGGACTTCGCGAGTAAGGCTACAGACCGTAGGTC
AGTTTCAGGAGCAATGGTTTTTGTGGCTGCTATGCTTGTAGTTTGGATTT
CTAGGACGCAGAAATGCGTTTCGCAGTCGACTTCTGAGGCAGAGTACCTT
GCGATGGGTGATGGTGTGAAGGAGGCTCTGTTTGTAAATGGAATGCTTCA
GTTCCTGCGGCCGAGTGTGAAGCCGCGTAAGATAGACGTCCTTGAGGACA
ACGAAGGAGCGATTGCGCTCGCAGAAAACCCGCTGAGCTCGAGTAGGAGT
AAGCACATCGACGTGAGGCATCACTTCCTTAGGAATTTGACGGAGGAAGG
TGTGATCGAGGTCACGCATGTCCCAAGTAAGGAGCAGCATGCGGACATCC
TCACGAAGGCTCTACCGAGAGACCTTTTTGAAGTTCACCGTGACTTTGCA
TTGGGATCTAGGAAGTAGGAGTCTGAATTGTTTTGTTGTTTTGCTTTGAT
ACTTGATGTACTTGGTCTGGTTGATACAACAGCCCCTAGGGAGGGTGTTC
GTGGTAGAGGCAGTATGTATCGACTGAGTTGCGTAGAATATCTGATTGGA
CGATTTGAATACGCGGAACAATGTCGATCCTCTGTAGATTGTTGAGCTAC
CGACATAAGGAACGTTCGTGGTCCTTGTGGTTGGAATAATCTTGTGGACG
CTGCGCTAGTCTGAGCATGGTATCTTAGTTCAGGTAATCATCCCGAGAGT
TTGTGGAGTGTAGGAAGTCGCAATGGTCCGAGGACTGGTACTGAGATACT
GTAGAACGTTGCTGGTGCTCCGGAACGGTTCCGGAACGTGTCCGTTGGTT
CGTTGGTTTCCAGGAGTTCGCAGGGTATCGAGGACACGGCTTGCACATCG
TGCTCACTCCACTTTCTGACCAGTCTCTCCTGACAAGGGTCT

Coding sequence (CDS) from alignment at Scaffold_246:625307..626848+

>EsuBft1057_6a-0001 ID=EsuBft1057_6a-0001|Name=EsuBft1057_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1017bp|location=Sequence derived from alignment at Scaffold_246:625307..626848+ (Ectocarpus subulatus male Bft15b)
ATGTCTGACCCCTGTGTCCTGCGTTTCATGATGGGAGACGAGGTGGTGGG
GATGGTCGCGATTCATGTGGATGACATTCTGTATGCAGGAACGAAGAGTC
TGGCTGAGGTTGTAGTGGCAGCGCTTGGTGACTCTCTTCCGACGAAGAAC
TTGGGCGAGGTCAAGTTCTTTCTTGGTTGCGAATACATTCGCGACCGCAA
GGCTGGTACGATCGAGATTTCTCAGGAGAGCTACATCAGGAGTGTCCTTG
AGAGGTTCAACATTGTTCGCACTAGTTCAATCCCTGCTTCCCTTAACAAC
GATGACAGGTCCTTGATGGAGGAGGAGGGGGCAGGAGATGTGCCGTTCCG
TGAGGTGGTTGGAAGCCTGATGTGGATCGCCAGCCAGACGCGAGCCGACA
TCTCTAACGCTGTGCGGGCTGTGGCGAGGCACTCTCACGAGCCAAAGAAG
AGCCACTGGAAGGCGGCCCAGAAGATCCTCAATTATCTTCTGGAAACGGC
ACATCTGACTTTGAAGTTCAAGCGTGATAGTTCGGTAGACGTAGGCACGT
TGGTGTACGTAGATGCGGACTTCGCGAGTAAGGCTACAGACCGTAGGTCA
GTTTCAGGAGCAATGGTTTTTGTGGCTGCTATGCTTGTAGTTTGGATTTC
TAGGACGCAGAAATGCGTTTCGCAGTCGACTTCTGAGGCAGAGTACCTTG
CGATGGGTGATGGTGTGAAGGAGGCTCTGTTTGTAAATGGAATGCTTCAG
TTCCTGCGGCCGAGTGTGAAGCCGCGTAAGATAGACGTCCTTGAGGACAA
CGAAGGAGCGATTGCGCTCGCAGAAAACCCGCTGAGCTCGAGTAGGAGTA
AGCACATCGACGTGAGGCATCACTTCCTTAGGAATTTGACGGAGGAAGGT
GTGATCGAGGTCACGCATGTCCCAAGTAAGGAGCAGCATGCGGACATCCT
CACGAAGGCTCTACCGAGAGACCTTTTTGAAGTTCACCGTGACTTTGCAT
TGGGATCTAGGAAGTAG