EsuBft1057_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1057_14a-0001
Unique NameEsuBft1057_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:722824..723215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1057_14
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length39
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_14aEsuBft1057_14aEctocarpus subulatus male Bft15bgeneScaffold_246 722824..723215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_14a-0001-exonEsuBft1057_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 722824..723215 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_14a-0001-exonagat-five_prime_utr-344Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 722824..722829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_14a-0001-cdsEsuBft1057_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 722830..723027 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_14a-0001-exonagat-three_prime_utr-549Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 723028..723215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1057_14a-0001EsuBft1057_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 722830..723027 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1057_14a-0001 ID=EsuBft1057_14a-0001|Name=EsuBft1057_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=392bp|location=Sequence derived from alignment at Scaffold_246:722824..723215+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAATAATGGGGATTGGACAAAATCGGGACGTCCCTGGGGTACAATGTGC
AAAATCGGGACGCCTTCTGAACGTGCCGCGTTGCGACGACGCACACACCC
AATACCGCACGAAATCGCGCCACAGCGCCTCCACCCGCCGCGCACAAGGC
GCGCCGACCCTCTCCAACCCTTTTTTCCCTGCTCAACAACCTAAAACAGT
GTAGACGCAGCCGCGCACAAAGCCCTCTCCGCAGACCATCCGATTTTGTC
CCAAAACCTGTAAGGTCGACCCCTACCCCGAGCAAAAAAAACATTATCTC
CGACCCTATTTTGTCCATCTGACTACTCCTTTTTGTTCAGCACAGCCGGT
TTCGTGGGGAGATTGAACGCGGCCATCTCCCCGCAGCACCAC
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protein sequence of EsuBft1057_14a-0001

>EsuBft1057_14 ID=EsuBft1057_14|Name=EsuBft1057_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MGIGQNRDVPGVQCAKSGRLLNVPRCDDAHTQYRTKSRHSASTRRAQGAP
TLSNPFFPAQQPKTV
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mRNA from alignment at Scaffold_246:722824..723215+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1057_14a-0001 ID=EsuBft1057_14a-0001|Name=EsuBft1057_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=392bp|location=Sequence derived from alignment at Scaffold_246:722824..723215+ (Ectocarpus subulatus male Bft15b)
AAAATAATGGGGATTGGACAAAATCGGGACGTCCCTGGGGTACAATGTGC
AAAATCGGGACGCCTTCTGAACGTGCCGCGTTGCGACGACGCACACACCC
AATACCGCACGAAATCGCGCCACAGCGCCTCCACCCGCCGCGCACAAGGC
GCGCCGACCCTCTCCAACCCTTTTTTCCCTGCTCAACAACCTAAAACAGT
GTAGACGCAGCCGCGCACAAAGCCCTCTCCGCAGACCATCCGATTTTGTC
CCAAAACCTGTAAGGTCGACCCCTACCCCGAGCAAAAAAAACATTATCTC
CGACCCTATTTTGTCCATCTGACTACTCCTTTTTGTTCAGCACAGCCGGT
TTCGTGGGGAGATTGAACGCGGCCATCTCCCCGCAGCACCAC
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Coding sequence (CDS) from alignment at Scaffold_246:722824..723215+

>EsuBft1057_14a-0001 ID=EsuBft1057_14a-0001|Name=EsuBft1057_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_246:722824..723215+ (Ectocarpus subulatus male Bft15b)
ATGGGGATTGGACAAAATCGGGACGTCCCTGGGGTACAATGTGCAAAATC
GGGACGCCTTCTGAACGTGCCGCGTTGCGACGACGCACACACCCAATACC
GCACGAAATCGCGCCACAGCGCCTCCACCCGCCGCGCACAAGGCGCGCCG
ACCCTCTCCAACCCTTTTTTCCCTGCTCAACAACCTAAAACAGTGTAG
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