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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LS08 |
| ProteomeId | EsuBft1056_7 |
| Protein domains | IPR005031 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | TMhelix |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | IPR023393 |
| Protein domains | SSF55961 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | uncharacterized kda protein in melc2-rnhh intergenic region os:streptomyces lincolnensis pe:4 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1636 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.11e-103 |
| EggNOG OGs | COG5637@1|root,2QSDH@2759|Eukaryota |
| Ec32 ortholog description | Streptomyces cyclase/dehydrase |
| Ec32 ortholog | Ec-08_001670.1 |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| Description | Polyketide cyclase / dehydrase and lipid transport |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1056_7a-0001 ID=EsuBft1056_7a-0001|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1636bp|location=Sequence derived from alignment at Scaffold_427:235690..241079+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCTGCCTCGTTGCCCTGTCGTACACACCTCCTATATATACATGCGTGTGC TGTACGCTGGATGGCGCCAAGGCTCTGAGTGCTGCACCATGAGAAACGGG ACTCTGTTGGCTGTTGCAGGTGCCGCCGTATTGATCAGTGCGTCCTGCTC CAGCGGCGCGATACGCTGCGATGCCTTTGTCTTGCGCGGAGGCATGAAGC GGCGTGATAGCACCATCACACGCGTGAGAGGTGGGGTGTCAGACCTCCGA GCTGCTTGGATCGATGAACAGGTCTCGCTCGAGGTGCCAGCGTCCACCCA GGACGCGTACTCCCTGTATTCGGATCTCCAGAGGCAGCCGGAGTGGTCTC CTTGGCTCAAAAGTGTCCAGCATGACCGCGCAACCGGGACCTCGAAGTGG GTCATCCAATCCAACGGCATCAAGGTTTCCTGGAACGCCCAAAACACCGT GGAGGTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGACGGGCCTCAGCA ACCGGGGTCGAGTGACGTTCGACGACAAGGGGGATGGGCGATGCCTCATG ACGCTGACGCTGTCGTACAACCTGCCGTACGTGATAGCGTCCGTGCTGCG GCTGGAGGCCGTCGAAAGGTTCGTCAAGCGGACCATCCTCAGCGACCTTG CGCGGTTCAAGAAGGTGTTGGTTCGGCAGCTGGAGACGGTGCCTGCCTCT CCTAGCACCGCTCCCAAGGAATCGGTCCACGGCACCCCTGGTGCTGTTGC TACTGCTGCTGCCGCTGCTTCAACTGTCGCCGCTCCTGCTACTTCCAGCG CTGCGCCTGCAGCTGCTCCTGCATCTACTGCTTCTGCGGTGGCCCCTCCT ACGACGACACCTGCTTCTTCTGCCGCTGTCATCACCACCACTGCCACTGC TGACGACGCTGCTGGTGCTCCGAGCGTAGCCGCCGGCGCGGATGGCGTGG AATCAGAAGGCGAGGGCAAGGACAGTATTCGCGCTCCTGGGCGACGATCG CGATGGAGACGGAGATTTCGGAGATTACTGCGGCGAGATCGGGACCGAGA GGCTACCGCGCCTTCAGCGGTGGCGGCGGTGGTAGAACACGACGGATCGT AGGGCAGAACACAACAGATCGTGAGATTCTGTTTTTTTGCCGCCGTTTTG GCCGGCACTCATGTTGACAGTAAAGTGAACGGTACTCTCTTGTGTTAAAC ATATATTTTCTAAAAAATCGTGGTGCAAGCAAGCGAGTGAATCGATTGGT TTTTGTAGTATATTTTGCATATCTGTAAGAAATCGGCAGCTGATCTTGCA CTTGGGCATCCGCGTTTATGCTGACACAACGATATGGTTGGACACATACA CCCATCCTGGCTTGCGGCTTGATAGTGTATCCCCGCGTTGCTGCCGTGCT GCTGCAGCCCTTTGCGTGTCTTTTGTCGTTGTTCGACGAGAGGTCGGTGA GTTTGAGTAGAGAGGTCGGTGAGTTACATGCCTGTTGCGTGGAAACCCGG GGACGAAAAGCTCGACCAATGGGCAGAGACGTTCGCTGCACCCGCAGCGT GATGGCACCCAGTGGGTCGCGGCATTGTGTCGCATCCACGGCCTTTTGGC TGTCATTCCCACCACAGGGGGAGAAAACAAGAAACT back to topprotein sequence of EsuBft1056_7a-0001 >EsuBft1056_7 ID=EsuBft1056_7|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MRVLYAGWRQGSECCTMRNGTLLAVAGAAVLISASCSSGAIRCDAFVLRG GMKRRDSTITRVRGGVSDLRAAWIDEQVSLEVPASTQDAYSLYSDLQRQP EWSPWLKSVQHDRATGTSKWVIQSNGIKVSWNAQNTVEVYGSEVAWESTT GLSNRGRVTFDDKGDGRCLMTLTLSYNLPYVIASVLRLEAVERFVKRTIL SDLARFKKVLVRQLETVPASPSTAPKESVHGTPGAVATAAAAASTVAAPA TSSAAPAAAPASTASAVAPPTTTPASSAAVITTTATADDAAGAPSVAAGA DGVESEGEGKDSIRAPGRRSRWRRRFRRLLRRDRDREATAPSAVAAVVEH DGS back to topmRNA from alignment at Scaffold_427:235690..241079+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1056_7a-0001 ID=EsuBft1056_7a-0001|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5390bp|location=Sequence derived from alignment at Scaffold_427:235690..241079+ (Ectocarpus subulatus male Bft15b) CCTGCCTCGTTGCCCTGTCGTACACACCTCCTATATATACATGCGTGTGC
TGTACGCTGGATGGCGCCAAGGCTCTGAGTGCTGCACCATGAGAAACGGG
ACTCTGTTGGCTGTTGCAGGTGCCGCCGTATTGATCAGTGCGTCCTGCTC
CAGCGGCGCGATACGCTGCGATGCCTTTGTCTTGCGCGGAGGCATGAAGC
GGCGTGATAGCACCATCACACGCGTGAGAGGTGGGGTGTCAGACCTCCGA
GCTGCTTGGATCGATGAACAGGTGACTTGCTTATCCGCGTACAGCCCAGT
GTGTGGAGAGGGTGCGTGAAGCCAAGCAGGGAAAATTACTACCGGTGCAC
CGTGTTTTGGTTGCGGAGTATGAAGAAAGCCGGTGGTTATCATGTTTGTC
AATGTCATTATGTCATCCATCCACACCGCGTGCGCCTCGATCAATCTCAG
CACGCGGTTGCATTCCCTTGTCTTATGCTCAAGTAACTGTAGGAAAAGGT
CGACCATGACTCTGTAAATTTCTCCACCACTGCTGTTATCGGGCAAGTTC
TGTGAACGTCCGTAATGCTGCAAAACGGCAAGAGATCAGGTGCTTCGACA
CGTAGTTTTGCCGACCGTACTGCTGATCTGCTGATGCAACCAAGCCAACG
GCACCTAAATACATACGGACAGGTAGTTTTACTGTCGCCCGCGGTCCACT
ATTTCCTGTAGTGTCGAAATGCGCATCTATGGGTGGTGCATCAACAGGAT
TGAGGACGGCGTCCTGGCTGGAGGAACGAAGTCAGACTGATCCATGCAGT
ATGGACATCTACAACATCGTATTTCTCGTGTACTGTTGGTTTTGCGGGTG
GGTCTCCCCTTGCCGCTTGTGAGGCGACGGAGGCGACACTTGAAGGGCCA
CCGCGGTAGTGCCGCTCGTGACTCTTTTCAATGCCCCGCGGGGAGCCTTC
CGCGCAAGGCCCCAACAGACGACATGCTGCTGCAGGCGACGTCGCTTGAC
TGACCCTGTTCTTGCTTCCCCACGCGGGGTTGCGGTTGCTCCTGCGGGTA
TGTGTGTCTTGCTCTGTGACAAGGTCTCGCTCGAGGTGCCAGCGTCCACC
CAGGACGCGTACTCCCTGTATTCGGATCTCCAGAGGCAGCCGGAGTGGTC
TCCTTGGCTCAAAAGTGTCCAGGTAATAAATAGTACATGGACACATGCGA
CACCGCTTACCGTACATTTCGTTTGTTTCCTTCAAGGGGCCGGTGCGCGC
GCGATTCGTCTGAGCTACATGTAGCCGTTCGAGGTCGAACCGACTACTAT
TGCGACACAAGTATGCCAAAAGGTGTAGGTTCACCTGTTGGCTTCTTTCG
GTCTAGTGCGTGCGCGCGAAACCGTGTGGGTTCAACGTCCGAGACGGTTG
TAAAGACGGCGATACAGGGGCCAATAGGAAACAACCGTAATCTGCATACC
TGAGAGTACAGCAAGCGTTCAGGCTGAGACGAAGTCAGCCAGAGTAACCA
TGGAGGAGGCCGCAGGAAGTTATTACTCCCAGATTTTGTCAAGCAATATA
GTGGCACCGGGTGGAAACGGTTGATTAGTTGAAGACCGGACAGGACCCTG
CCCTTTTGACCAAACCTGCGCAAGGAATCCCCCCTTTCGGCCGCTGGCGT
CGTCCCCAGCAACGAACGTACGTTTTCACGGCATACCCTCATTCCCTCCT
TCCTGTTTCTGTGTTCCACCGGTGCCTTGGCCTGCAATTGTATTCCGGTT
TGTTCTGGCTCTCTCTGTGCGTGTTTGTCCGTCTGGCTTTTGCTGTGGTT
GCCTTCGGCACGGCCTTTGGTTTTGACGTGGTGACCTCAAGTACGTGGCT
CCCAATCCACGTACCGCTCTCTGCCCTGTGCCACCCCCCCCCCGCCCCCG
TGTTCTTCTCAGCACCAGATCTTCATCATCTTCGTTCCAAACGCCTCCCC
TGTGAAATCTCCGTTCGCCAATGTTTTGTAGGCCGCATGGCTTCGCGCTC
GTCGCATGCCTCTGCGAACACCAACCAGTATATACCTTAAGCAACGTCTG
CGTCCCTCGTTCCTCGTGTGCATATGCCGTCTGGCCACAGCATGACCGCG
CAACCGGGACCTCGAAGTGGGTCATCCAATCCAACGGCATCAAGGTTTCC
TGGAACGCCCAAAACACCGTGGAGGTACGCGCGTCGGCTTGCGGGGGGGG
GGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGCAGTT
CGCGGTGCGAATACCATGGCCGTAGCTGTTTTGGTTGTTTAGGGACGGCC
CATGGCGTCATCTCGACGACGCAAGCCTTGAAAAGCCGGTGTGGGTGCCT
TTACTTCAAGGAGCCAGAGACGAGATTCAGGATGATGTCTACCGCTTGGC
ACATCAATGATATCTGCCACCAGGACGTCGATGACACGAGGGCATCTCAA
ATTGCCCGCGTCGACGACCAACGCTACGACACTTAAACGACTTCTTGTTT
GCTCGCACACGATAGGTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGAC
GGGCCTCAGCAACCGGGGTCGAGTGACGTTCGACGACAAGGGGGATGGGC
GATGCCTCATGACGCTGACGCTGTCGTACAACCTGCCGTACGTAAGTCGT
CGCCGTTCCCTGACAACTCAGCCTGCAGCCACCTGCGTGCAGGCCGAATC
ACTCTGTTTCGGCGAAGGGTCGCCGTCTTGTTGTTCCGACTGGTGTTGGT
ACTGTGAGGTGTGCCATGAACCCCTTTCCTGGCCGCGCCCCTCCTACGTA
GTCTTGCAGAAGCAGCAGGGGGGACTTGAGAGTCGTTGAACCACACGGGT
GTATGGTACGGGCCATGCTGGTCGATGTTGTCACGGGGTGGGTTCGTGCC
CGGAGTCTTGAGCATGGCTACCGTACTGACTATGTGTATATTGTGGTTTC
GAAGTAATCCGCATCTCACTGCTGTAGGGTTCTGTATGGATAGGCCACCT
TATTTGTTGGGGTGGGGTTCTTACCTGTTGGACGAGGTGTTTCTTGGCTC
TACGGATTTTGTGTGCGTTATTTGGAATGGCTATAGCTTCGTCTAGCCGA
GATGTCGCACGTGGTTGTTGCCGTGCTGTTTGCTCTTGTTGGGTACGTCC
ATCAGATACTCTCGATTGACCCCCTCGCGAGCTGTGTGCCTGTCTTCTTA
TGTCTCCGTCTTCATAGGTGTTGTCATTTGCGCGGCGTGCCAATCCATCT
ACCGGCGTTGCAGGTGATAGCGTCCGTGCTGCGGCTGGAGGCCGTCGAAA
GGTTCGTCAAGCGGACCATCCTCAGGTAACACAACGGCAGCAACATCAGC
GGAGACAAGTACAAGCGTACAGAAAGGAAGGGCCTGGCTTTCTCGCGTAT
CGCCATTTGCACCATCAACACTCGAAAGATGCGCGGTGCATTGACTACCC
TGGTCTGCTCATTACCGTTAGATCCTGACCCCCCCTCCCCGTCTGTATGT
ATGTCTGGTGACGCAGCTCGTTTATCCTTGCTTGGTAGCCGAATAGCACC
CACCCACGAAGCAGCCTGTTTCTGCGAAAAGGTCGGGAATACACTGAAAA
TGGCAACGAGTATTGCCGTAGACGACAGCTACGAGCAGGACGTTAGCTGT
AAGTCAAGAGGATGAGACCGTTGTGGCCAAAAACCAACGCCGCTGAGTAG
GTTACGGAACCGATGAAGAATTTCTCGTGTGTACACTTGAAGCAGACATT
TCCTGTGATAGGCGAGCGCCCGGATGTTTTTTCCGAGTCGCTTGCGAGTC
GGTGGAGCAGCACCCCATCTCGAATGGCACGTGTGGAACAATGGTCCAAC
AAACCTTTCGGTTGGGCACCTGGCAAGAACCCTCATCCTTTGCACCCGTC
TGCCGCCTTTTGTCCTGTTCGTCTCATCGCGTTGGCGCGGCTTTGTCACT
GTACGGCTGCGTTTGCACTCTCTCACCATTGGCCACCTTCTTTCTTGGCT
GGACAAAAAACGCGACGGATACATGTGAATGCGTCGATGCAAACAGCGAC
CTTGCGCGGTTCAAGAAGGTGTTGGTTCGGCAGCTGGAGACGGTGCCTGC
CTCTCCTAGCACCGCTCCCAAGGAATCGGTCCACGGCACCCCTGGTGCTG
TTGCTACTGCTGCTGCCGCTGCTTCAACTGTCGCCGCTCCTGCTACTTCC
AGCGCTGCGCCTGCAGCTGCTCCTGCATCTACTGCTTCTGCGGTGGCCCC
TCCTACGACGACACCTGCTTCTTCTGCCGCTGTCATCACCACCACTGCCA
CTGCTGACGACGCTGCTGGTGCTCCGAGCGTAGCCGCCGGCGCGGATGGC
GTGGAATCAGAAGGCGAGGGCAAGGACAGTATTCGCGCTCCTGGGCGACG
ATCGCGATGGAGACGGAGATTTCGGAGATTACTGCGGCGAGATCGGGACC
GAGAGGCTACCGCGCCTTCAGCGGTGGCGGCGGTGGTAGAACACGACGGA
TCGTAGGGCAGAACACAACAGATCGTGAGATTCTGTTTTTTTGCCGCCGT
TTTGGCCGGCACTCATGTTGACAGTAAAGTGAACGGTACTCTCTTGTGTT
AAACATATATTTTCTAAAAAATCGTGGTGCAAGCAAGCGAGTGAATCGAT
TGGTTTTTGTAGTATATTTTGCATATCTGTAAGAAATCGGCAGCTGATCT
TGCACTTGGGCATCCGCGTTTATGCTGACACAACGATATGGTTGGACACA
TACACCCATCCTGGCTTGCGGCTTGATAGTGTATCCCCGCGTTGCTGCCG
TGCTGCTGCAGCCCTTTGCGTGTCTTTTGTCGTTGTTCGACGAGAGGTCG
GTGAGTTTGAGTAGAGAGGTCGGTGAGTTACATGCCTGTTGCGTGGAAAC
CCGGGGACGAAAAGCTCGACCAATGGGCAGAGACGTTCGCTGCACCCGCA
GCGTGATGGCACCCAGTGGGTCGCGGCATTGTGTCGCATCCACGGCCTTT
TGGCTGTCATTCCCACCACAGGGGGAGAAAACAAGAAACT back to topCoding sequence (CDS) from alignment at Scaffold_427:235690..241079+ >EsuBft1056_7a-0001 ID=EsuBft1056_7a-0001|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_427:235690..241079+ (Ectocarpus subulatus male Bft15b) ATGCGTGTGCTGTACGCTGGATGGCGCCAAGGCTCTGAGTGCTGCACCAT GAGAAACGGGACTCTGTTGGCTGTTGCAGGTGCCGCCGTATTGATCAGTG CGTCCTGCTCCAGCGGCGCGATACGCTGCGATGCCTTTGTCTTGCGCGGA GGCATGAAGCGGCGTGATAGCACCATCACACGCGTGAGAGGTGGGGTGTC AGACCTCCGAGCTGCTTGGATCGATGAACAGGTCTCGCTCGAGGTGCCAG CGTCCACCCAGGACGCGTACTCCCTGTATTCGGATCTCCAGAGGCAGCCG GAGTGGTCTCCTTGGCTCAAAAGTGTCCAGCATGACCGCGCAACCGGGAC CTCGAAGTGGGTCATCCAATCCAACGGCATCAAGGTTTCCTGGAACGCCC AAAACACCGTGGAGGTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGACG GGCCTCAGCAACCGGGGTCGAGTGACGTTCGACGACAAGGGGGATGGGCG ATGCCTCATGACGCTGACGCTGTCGTACAACCTGCCGTACGTGATAGCGT CCGTGCTGCGGCTGGAGGCCGTCGAAAGGTTCGTCAAGCGGACCATCCTC AGCGACCTTGCGCGGTTCAAGAAGGTGTTGGTTCGGCAGCTGGAGACGGT GCCTGCCTCTCCTAGCACCGCTCCCAAGGAATCGGTCCACGGCACCCCTG GTGCTGTTGCTACTGCTGCTGCCGCTGCTTCAACTGTCGCCGCTCCTGCT ACTTCCAGCGCTGCGCCTGCAGCTGCTCCTGCATCTACTGCTTCTGCGGT GGCCCCTCCTACGACGACACCTGCTTCTTCTGCCGCTGTCATCACCACCA CTGCCACTGCTGACGACGCTGCTGGTGCTCCGAGCGTAGCCGCCGGCGCG GATGGCGTGGAATCAGAAGGCGAGGGCAAGGACAGTATTCGCGCTCCTGG GCGACGATCGCGATGGAGACGGAGATTTCGGAGATTACTGCGGCGAGATC GGGACCGAGAGGCTACCGCGCCTTCAGCGGTGGCGGCGGTGGTAGAACAC GACGGATCGTAG back to top
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