EsuBft1056_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1056_7a-0001
Unique NameEsuBft1056_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_427contigScaffold_427:235690..241079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LS08
ProteomeIdEsuBft1056_7
Protein domainsIPR005031
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR023393
Protein domainsSSF55961
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized kda protein in melc2-rnhh intergenic region os:streptomyces lincolnensis pe:4 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1636
Hectar predicted targeting categorysignal peptide
Evalue1.11e-103
EggNOG OGsCOG5637@1|root,2QSDH@2759|Eukaryota
Ec32 ortholog descriptionStreptomyces cyclase/dehydrase
Ec32 orthologEc-08_001670.1
Date last modified2016-06-15
Date creation2016-06-15
DescriptionPolyketide cyclase / dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_7aEsuBft1056_7aEctocarpus subulatus male Bft15bgeneScaffold_427 235690..241079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_7a-0001EsuBft1056_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_427 235730..240545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_7a-0001-exonagat-exon-24512Ectocarpus subulatus male Bft15bexonScaffold_427 235690..235960 +
EsuBft1056_7a-0001-exonagat-exon-24514Ectocarpus subulatus male Bft15bexonScaffold_427 236763..236861 +
EsuBft1056_7a-0001-exonagat-exon-24510Ectocarpus subulatus male Bft15bexonScaffold_427 237780..237863 +
EsuBft1056_7a-0001-exonagat-exon-24511Ectocarpus subulatus male Bft15bexonScaffold_427 238555..238680 +
EsuBft1056_7a-0001-exonEsuBft1056_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_427 239303..239364 +
EsuBft1056_7a-0001-exonagat-exon-24513Ectocarpus subulatus male Bft15bexonScaffold_427 240086..241079 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_7a-0001-exonagat-five_prime_utr-338Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_427 235690..235729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_7a-0001-cdsEsuBft1056_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_427 235730..235960 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_7a-0001-exonagat-three_prime_utr-544Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_427 240546..241079 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1056_7a-0001 ID=EsuBft1056_7a-0001|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1636bp|location=Sequence derived from alignment at Scaffold_427:235690..241079+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTGCCTCGTTGCCCTGTCGTACACACCTCCTATATATACATGCGTGTGC
TGTACGCTGGATGGCGCCAAGGCTCTGAGTGCTGCACCATGAGAAACGGG
ACTCTGTTGGCTGTTGCAGGTGCCGCCGTATTGATCAGTGCGTCCTGCTC
CAGCGGCGCGATACGCTGCGATGCCTTTGTCTTGCGCGGAGGCATGAAGC
GGCGTGATAGCACCATCACACGCGTGAGAGGTGGGGTGTCAGACCTCCGA
GCTGCTTGGATCGATGAACAGGTCTCGCTCGAGGTGCCAGCGTCCACCCA
GGACGCGTACTCCCTGTATTCGGATCTCCAGAGGCAGCCGGAGTGGTCTC
CTTGGCTCAAAAGTGTCCAGCATGACCGCGCAACCGGGACCTCGAAGTGG
GTCATCCAATCCAACGGCATCAAGGTTTCCTGGAACGCCCAAAACACCGT
GGAGGTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGACGGGCCTCAGCA
ACCGGGGTCGAGTGACGTTCGACGACAAGGGGGATGGGCGATGCCTCATG
ACGCTGACGCTGTCGTACAACCTGCCGTACGTGATAGCGTCCGTGCTGCG
GCTGGAGGCCGTCGAAAGGTTCGTCAAGCGGACCATCCTCAGCGACCTTG
CGCGGTTCAAGAAGGTGTTGGTTCGGCAGCTGGAGACGGTGCCTGCCTCT
CCTAGCACCGCTCCCAAGGAATCGGTCCACGGCACCCCTGGTGCTGTTGC
TACTGCTGCTGCCGCTGCTTCAACTGTCGCCGCTCCTGCTACTTCCAGCG
CTGCGCCTGCAGCTGCTCCTGCATCTACTGCTTCTGCGGTGGCCCCTCCT
ACGACGACACCTGCTTCTTCTGCCGCTGTCATCACCACCACTGCCACTGC
TGACGACGCTGCTGGTGCTCCGAGCGTAGCCGCCGGCGCGGATGGCGTGG
AATCAGAAGGCGAGGGCAAGGACAGTATTCGCGCTCCTGGGCGACGATCG
CGATGGAGACGGAGATTTCGGAGATTACTGCGGCGAGATCGGGACCGAGA
GGCTACCGCGCCTTCAGCGGTGGCGGCGGTGGTAGAACACGACGGATCGT
AGGGCAGAACACAACAGATCGTGAGATTCTGTTTTTTTGCCGCCGTTTTG
GCCGGCACTCATGTTGACAGTAAAGTGAACGGTACTCTCTTGTGTTAAAC
ATATATTTTCTAAAAAATCGTGGTGCAAGCAAGCGAGTGAATCGATTGGT
TTTTGTAGTATATTTTGCATATCTGTAAGAAATCGGCAGCTGATCTTGCA
CTTGGGCATCCGCGTTTATGCTGACACAACGATATGGTTGGACACATACA
CCCATCCTGGCTTGCGGCTTGATAGTGTATCCCCGCGTTGCTGCCGTGCT
GCTGCAGCCCTTTGCGTGTCTTTTGTCGTTGTTCGACGAGAGGTCGGTGA
GTTTGAGTAGAGAGGTCGGTGAGTTACATGCCTGTTGCGTGGAAACCCGG
GGACGAAAAGCTCGACCAATGGGCAGAGACGTTCGCTGCACCCGCAGCGT
GATGGCACCCAGTGGGTCGCGGCATTGTGTCGCATCCACGGCCTTTTGGC
TGTCATTCCCACCACAGGGGGAGAAAACAAGAAACT
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protein sequence of EsuBft1056_7a-0001

>EsuBft1056_7 ID=EsuBft1056_7|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MRVLYAGWRQGSECCTMRNGTLLAVAGAAVLISASCSSGAIRCDAFVLRG
GMKRRDSTITRVRGGVSDLRAAWIDEQVSLEVPASTQDAYSLYSDLQRQP
EWSPWLKSVQHDRATGTSKWVIQSNGIKVSWNAQNTVEVYGSEVAWESTT
GLSNRGRVTFDDKGDGRCLMTLTLSYNLPYVIASVLRLEAVERFVKRTIL
SDLARFKKVLVRQLETVPASPSTAPKESVHGTPGAVATAAAAASTVAAPA
TSSAAPAAAPASTASAVAPPTTTPASSAAVITTTATADDAAGAPSVAAGA
DGVESEGEGKDSIRAPGRRSRWRRRFRRLLRRDRDREATAPSAVAAVVEH
DGS
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mRNA from alignment at Scaffold_427:235690..241079+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1056_7a-0001 ID=EsuBft1056_7a-0001|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5390bp|location=Sequence derived from alignment at Scaffold_427:235690..241079+ (Ectocarpus subulatus male Bft15b)
CCTGCCTCGTTGCCCTGTCGTACACACCTCCTATATATACATGCGTGTGC TGTACGCTGGATGGCGCCAAGGCTCTGAGTGCTGCACCATGAGAAACGGG ACTCTGTTGGCTGTTGCAGGTGCCGCCGTATTGATCAGTGCGTCCTGCTC CAGCGGCGCGATACGCTGCGATGCCTTTGTCTTGCGCGGAGGCATGAAGC GGCGTGATAGCACCATCACACGCGTGAGAGGTGGGGTGTCAGACCTCCGA GCTGCTTGGATCGATGAACAGGTGACTTGCTTATCCGCGTACAGCCCAGT GTGTGGAGAGGGTGCGTGAAGCCAAGCAGGGAAAATTACTACCGGTGCAC CGTGTTTTGGTTGCGGAGTATGAAGAAAGCCGGTGGTTATCATGTTTGTC AATGTCATTATGTCATCCATCCACACCGCGTGCGCCTCGATCAATCTCAG CACGCGGTTGCATTCCCTTGTCTTATGCTCAAGTAACTGTAGGAAAAGGT CGACCATGACTCTGTAAATTTCTCCACCACTGCTGTTATCGGGCAAGTTC TGTGAACGTCCGTAATGCTGCAAAACGGCAAGAGATCAGGTGCTTCGACA CGTAGTTTTGCCGACCGTACTGCTGATCTGCTGATGCAACCAAGCCAACG GCACCTAAATACATACGGACAGGTAGTTTTACTGTCGCCCGCGGTCCACT ATTTCCTGTAGTGTCGAAATGCGCATCTATGGGTGGTGCATCAACAGGAT TGAGGACGGCGTCCTGGCTGGAGGAACGAAGTCAGACTGATCCATGCAGT ATGGACATCTACAACATCGTATTTCTCGTGTACTGTTGGTTTTGCGGGTG GGTCTCCCCTTGCCGCTTGTGAGGCGACGGAGGCGACACTTGAAGGGCCA CCGCGGTAGTGCCGCTCGTGACTCTTTTCAATGCCCCGCGGGGAGCCTTC CGCGCAAGGCCCCAACAGACGACATGCTGCTGCAGGCGACGTCGCTTGAC TGACCCTGTTCTTGCTTCCCCACGCGGGGTTGCGGTTGCTCCTGCGGGTA TGTGTGTCTTGCTCTGTGACAAGGTCTCGCTCGAGGTGCCAGCGTCCACC CAGGACGCGTACTCCCTGTATTCGGATCTCCAGAGGCAGCCGGAGTGGTC TCCTTGGCTCAAAAGTGTCCAGGTAATAAATAGTACATGGACACATGCGA CACCGCTTACCGTACATTTCGTTTGTTTCCTTCAAGGGGCCGGTGCGCGC GCGATTCGTCTGAGCTACATGTAGCCGTTCGAGGTCGAACCGACTACTAT TGCGACACAAGTATGCCAAAAGGTGTAGGTTCACCTGTTGGCTTCTTTCG GTCTAGTGCGTGCGCGCGAAACCGTGTGGGTTCAACGTCCGAGACGGTTG TAAAGACGGCGATACAGGGGCCAATAGGAAACAACCGTAATCTGCATACC TGAGAGTACAGCAAGCGTTCAGGCTGAGACGAAGTCAGCCAGAGTAACCA TGGAGGAGGCCGCAGGAAGTTATTACTCCCAGATTTTGTCAAGCAATATA GTGGCACCGGGTGGAAACGGTTGATTAGTTGAAGACCGGACAGGACCCTG CCCTTTTGACCAAACCTGCGCAAGGAATCCCCCCTTTCGGCCGCTGGCGT CGTCCCCAGCAACGAACGTACGTTTTCACGGCATACCCTCATTCCCTCCT TCCTGTTTCTGTGTTCCACCGGTGCCTTGGCCTGCAATTGTATTCCGGTT TGTTCTGGCTCTCTCTGTGCGTGTTTGTCCGTCTGGCTTTTGCTGTGGTT GCCTTCGGCACGGCCTTTGGTTTTGACGTGGTGACCTCAAGTACGTGGCT CCCAATCCACGTACCGCTCTCTGCCCTGTGCCACCCCCCCCCCGCCCCCG TGTTCTTCTCAGCACCAGATCTTCATCATCTTCGTTCCAAACGCCTCCCC TGTGAAATCTCCGTTCGCCAATGTTTTGTAGGCCGCATGGCTTCGCGCTC GTCGCATGCCTCTGCGAACACCAACCAGTATATACCTTAAGCAACGTCTG CGTCCCTCGTTCCTCGTGTGCATATGCCGTCTGGCCACAGCATGACCGCG CAACCGGGACCTCGAAGTGGGTCATCCAATCCAACGGCATCAAGGTTTCC TGGAACGCCCAAAACACCGTGGAGGTACGCGCGTCGGCTTGCGGGGGGGG GGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGCAGTT CGCGGTGCGAATACCATGGCCGTAGCTGTTTTGGTTGTTTAGGGACGGCC CATGGCGTCATCTCGACGACGCAAGCCTTGAAAAGCCGGTGTGGGTGCCT TTACTTCAAGGAGCCAGAGACGAGATTCAGGATGATGTCTACCGCTTGGC ACATCAATGATATCTGCCACCAGGACGTCGATGACACGAGGGCATCTCAA ATTGCCCGCGTCGACGACCAACGCTACGACACTTAAACGACTTCTTGTTT GCTCGCACACGATAGGTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGAC GGGCCTCAGCAACCGGGGTCGAGTGACGTTCGACGACAAGGGGGATGGGC GATGCCTCATGACGCTGACGCTGTCGTACAACCTGCCGTACGTAAGTCGT CGCCGTTCCCTGACAACTCAGCCTGCAGCCACCTGCGTGCAGGCCGAATC ACTCTGTTTCGGCGAAGGGTCGCCGTCTTGTTGTTCCGACTGGTGTTGGT ACTGTGAGGTGTGCCATGAACCCCTTTCCTGGCCGCGCCCCTCCTACGTA GTCTTGCAGAAGCAGCAGGGGGGACTTGAGAGTCGTTGAACCACACGGGT GTATGGTACGGGCCATGCTGGTCGATGTTGTCACGGGGTGGGTTCGTGCC CGGAGTCTTGAGCATGGCTACCGTACTGACTATGTGTATATTGTGGTTTC GAAGTAATCCGCATCTCACTGCTGTAGGGTTCTGTATGGATAGGCCACCT TATTTGTTGGGGTGGGGTTCTTACCTGTTGGACGAGGTGTTTCTTGGCTC TACGGATTTTGTGTGCGTTATTTGGAATGGCTATAGCTTCGTCTAGCCGA GATGTCGCACGTGGTTGTTGCCGTGCTGTTTGCTCTTGTTGGGTACGTCC ATCAGATACTCTCGATTGACCCCCTCGCGAGCTGTGTGCCTGTCTTCTTA TGTCTCCGTCTTCATAGGTGTTGTCATTTGCGCGGCGTGCCAATCCATCT ACCGGCGTTGCAGGTGATAGCGTCCGTGCTGCGGCTGGAGGCCGTCGAAA GGTTCGTCAAGCGGACCATCCTCAGGTAACACAACGGCAGCAACATCAGC GGAGACAAGTACAAGCGTACAGAAAGGAAGGGCCTGGCTTTCTCGCGTAT CGCCATTTGCACCATCAACACTCGAAAGATGCGCGGTGCATTGACTACCC TGGTCTGCTCATTACCGTTAGATCCTGACCCCCCCTCCCCGTCTGTATGT ATGTCTGGTGACGCAGCTCGTTTATCCTTGCTTGGTAGCCGAATAGCACC CACCCACGAAGCAGCCTGTTTCTGCGAAAAGGTCGGGAATACACTGAAAA TGGCAACGAGTATTGCCGTAGACGACAGCTACGAGCAGGACGTTAGCTGT AAGTCAAGAGGATGAGACCGTTGTGGCCAAAAACCAACGCCGCTGAGTAG GTTACGGAACCGATGAAGAATTTCTCGTGTGTACACTTGAAGCAGACATT TCCTGTGATAGGCGAGCGCCCGGATGTTTTTTCCGAGTCGCTTGCGAGTC GGTGGAGCAGCACCCCATCTCGAATGGCACGTGTGGAACAATGGTCCAAC AAACCTTTCGGTTGGGCACCTGGCAAGAACCCTCATCCTTTGCACCCGTC TGCCGCCTTTTGTCCTGTTCGTCTCATCGCGTTGGCGCGGCTTTGTCACT GTACGGCTGCGTTTGCACTCTCTCACCATTGGCCACCTTCTTTCTTGGCT GGACAAAAAACGCGACGGATACATGTGAATGCGTCGATGCAAACAGCGAC CTTGCGCGGTTCAAGAAGGTGTTGGTTCGGCAGCTGGAGACGGTGCCTGC CTCTCCTAGCACCGCTCCCAAGGAATCGGTCCACGGCACCCCTGGTGCTG TTGCTACTGCTGCTGCCGCTGCTTCAACTGTCGCCGCTCCTGCTACTTCC AGCGCTGCGCCTGCAGCTGCTCCTGCATCTACTGCTTCTGCGGTGGCCCC TCCTACGACGACACCTGCTTCTTCTGCCGCTGTCATCACCACCACTGCCA CTGCTGACGACGCTGCTGGTGCTCCGAGCGTAGCCGCCGGCGCGGATGGC GTGGAATCAGAAGGCGAGGGCAAGGACAGTATTCGCGCTCCTGGGCGACG ATCGCGATGGAGACGGAGATTTCGGAGATTACTGCGGCGAGATCGGGACC GAGAGGCTACCGCGCCTTCAGCGGTGGCGGCGGTGGTAGAACACGACGGA TCGTAGGGCAGAACACAACAGATCGTGAGATTCTGTTTTTTTGCCGCCGT TTTGGCCGGCACTCATGTTGACAGTAAAGTGAACGGTACTCTCTTGTGTT AAACATATATTTTCTAAAAAATCGTGGTGCAAGCAAGCGAGTGAATCGAT TGGTTTTTGTAGTATATTTTGCATATCTGTAAGAAATCGGCAGCTGATCT TGCACTTGGGCATCCGCGTTTATGCTGACACAACGATATGGTTGGACACA TACACCCATCCTGGCTTGCGGCTTGATAGTGTATCCCCGCGTTGCTGCCG TGCTGCTGCAGCCCTTTGCGTGTCTTTTGTCGTTGTTCGACGAGAGGTCG GTGAGTTTGAGTAGAGAGGTCGGTGAGTTACATGCCTGTTGCGTGGAAAC CCGGGGACGAAAAGCTCGACCAATGGGCAGAGACGTTCGCTGCACCCGCA GCGTGATGGCACCCAGTGGGTCGCGGCATTGTGTCGCATCCACGGCCTTT TGGCTGTCATTCCCACCACAGGGGGAGAAAACAAGAAACT
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Coding sequence (CDS) from alignment at Scaffold_427:235690..241079+

>EsuBft1056_7a-0001 ID=EsuBft1056_7a-0001|Name=EsuBft1056_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_427:235690..241079+ (Ectocarpus subulatus male Bft15b)
ATGCGTGTGCTGTACGCTGGATGGCGCCAAGGCTCTGAGTGCTGCACCAT
GAGAAACGGGACTCTGTTGGCTGTTGCAGGTGCCGCCGTATTGATCAGTG
CGTCCTGCTCCAGCGGCGCGATACGCTGCGATGCCTTTGTCTTGCGCGGA
GGCATGAAGCGGCGTGATAGCACCATCACACGCGTGAGAGGTGGGGTGTC
AGACCTCCGAGCTGCTTGGATCGATGAACAGGTCTCGCTCGAGGTGCCAG
CGTCCACCCAGGACGCGTACTCCCTGTATTCGGATCTCCAGAGGCAGCCG
GAGTGGTCTCCTTGGCTCAAAAGTGTCCAGCATGACCGCGCAACCGGGAC
CTCGAAGTGGGTCATCCAATCCAACGGCATCAAGGTTTCCTGGAACGCCC
AAAACACCGTGGAGGTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGACG
GGCCTCAGCAACCGGGGTCGAGTGACGTTCGACGACAAGGGGGATGGGCG
ATGCCTCATGACGCTGACGCTGTCGTACAACCTGCCGTACGTGATAGCGT
CCGTGCTGCGGCTGGAGGCCGTCGAAAGGTTCGTCAAGCGGACCATCCTC
AGCGACCTTGCGCGGTTCAAGAAGGTGTTGGTTCGGCAGCTGGAGACGGT
GCCTGCCTCTCCTAGCACCGCTCCCAAGGAATCGGTCCACGGCACCCCTG
GTGCTGTTGCTACTGCTGCTGCCGCTGCTTCAACTGTCGCCGCTCCTGCT
ACTTCCAGCGCTGCGCCTGCAGCTGCTCCTGCATCTACTGCTTCTGCGGT
GGCCCCTCCTACGACGACACCTGCTTCTTCTGCCGCTGTCATCACCACCA
CTGCCACTGCTGACGACGCTGCTGGTGCTCCGAGCGTAGCCGCCGGCGCG
GATGGCGTGGAATCAGAAGGCGAGGGCAAGGACAGTATTCGCGCTCCTGG
GCGACGATCGCGATGGAGACGGAGATTTCGGAGATTACTGCGGCGAGATC
GGGACCGAGAGGCTACCGCGCCTTCAGCGGTGGCGGCGGTGGTAGAACAC
GACGGATCGTAG
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