EsuBft1056_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1056_4a-0001
Unique NameEsuBft1056_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_427contigScaffold_427:267484..271409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LS05
ProteomeIdEsuBft1056_4
Protein domainsSignalP-TM
Protein domainsIPR013870
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length165
Hectar predicted targeting categorymitochondrion
Evalue2.55e-50
EggNOG OGsKOG3435@1|root,KOG3435@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameMRPL54
KEGG koko:K17435
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Descriptionmitochondrial translation
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_4aEsuBft1056_4aEctocarpus subulatus male Bft15bgeneScaffold_427 267484..271409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_4a-0001EsuBft1056_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_427 268623..271339 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_4a-0001-exonagat-exon-24492Ectocarpus subulatus male Bft15bexonScaffold_427 267484..268748 -
EsuBft1056_4a-0001-exonagat-exon-24491Ectocarpus subulatus male Bft15bexonScaffold_427 269856..270103 -
EsuBft1056_4a-0001-exonEsuBft1056_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_427 271273..271409 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_4a-0001-exonagat-three_prime_utr-542Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_427 267484..268622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_4a-0001-cdsEsuBft1056_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_427 268623..268748 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_4a-0001-exonagat-five_prime_utr-335Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_427 271340..271409 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1056_4a-0001 ID=EsuBft1056_4a-0001|Name=EsuBft1056_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1650bp|location=Sequence derived from alignment at Scaffold_427:267484..271409- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACAGATCACAGTCGTGAGCAGAGCAAGACAGAGACAGAAGGTCGTCCTG
GCACGCACGACGGGGTTATCATGTTGAGTTCATCCTCAAGACGAGTGGTG
CACCTGCGATGCGCGGAAGCTTTGCTGAGACATGTGGGGGCGGCGGGCTC
TACCACCACCTGCCGCAGACCCACCGCCGGCGTTAGCGCGAGAGGGATGA
TGGCGAAGGCGGGCGCCTCAGCGGCGTCCGGCGGGAAGAAAGGGGGCAAG
GGCGGCGGCGACAGCGCGAAAGACAGTGCGGGGGAGCACGGGCTAGGCGT
GACACCCATCAACTTCCTGAAGGATGGGAAGGACCCTTCGGTCATGCCCG
ACGAGGAATACCCGGAATGGCTGTGGAATATGCAGCTGCCAAGTCTTGCC
AGGTTGAAGCGTAAGAAGGAGGAGGACTACACGCTCGACGAGTTCAGGCG
ATTCGTTCAGCTCGACAGCCGAGAAAAGATCAAGCGCCAGAACCGATCGG
GAAAATTCTAAGAAGCTTTATTGGGTACGGGAGAAGAAGCAGAAAAAACG
GTAGCTGCTGTGATTGGCTAGGGATTGATCGGTTGACCTGCTTTTTTGGG
CTGGTTTGTCGCTCCTCTGCGGCGCGGTTGGTGATACAGCAACAGGAAAA
TTACCGTAGGTGACATGATGCAAGGCATCGCACCCCGTGGATTGATTTTC
GAAGCTCGATTTTTCCCCTGCAAAAAAAAACGCAGCGTCGAAGATTGCAG
CGTTGGAGCCGCAGAGCGTTCCCAAAAACTTCGTTGTGTCATTCATGGAT
CGTCTTCATCGCGGAGTCATCGAGCCGTGAAAATCGGTCTAGGGGGGTGT
GGTATGTTTGTCATGCCACCTACGTCGACTCCGCAATTTCGGGGAGGGGA
TCACGATTGGCGCAGAGTTATGATGTTGGAGCGATGGCCTTTGTTGAGTG
GAGAAGACGCGGTCGGTTGTATCGCCGTGGCGGGGTCCCCAAGGACAGTA
ACCCGATTATTCATGGGCATACAATGTACGGGCCAGATGAGAAACGAAGA
CAGAGACCGCCCCGAGATTTTTCGATACCGGTGGGAAGTGCCACAGCGTT
CTCGGCATGAACTGAGCCCCGACATGCTGGCCTATACTACTGCGTATAAG
GGCGCCCTTGATCGAGAATGGTCGGTGCCGCGTGTTTTGCGGGTGACGAC
GGGCGAAAGCACTCCGGTTTCGAACGGGAGTAGGGAGGTGGTCTACTGAT
CGACGACGCACTTGTGGTGTTGAGATTGCGTGCGGGCTTGGTCCCAGTGC
CCAGGCTAGACACTAAAACTAGAACAGAAAATCGAGATTTCGCAGCCAGT
AGCAAAAGACGAACGTCAATATTCTTTTGAGGTGTGGTGCGCGCGGCCGG
CGTCTAGCTGAATGTGTTGCTTCGGAGTTGCTGTGGAGAACCGGGGATCT
TGCTCATGTCTGAATTGGCAATATCACACCATTGATGTGTTTTCGGACTT
GAGCGTATTCGATTAGCAATATCAAGCCATTGATGTGTTTTTGACTCGTT
GTCTCTTCCTCCTCTCATTTACGGCGAGGGCGATTCCAGCATCTCGGTGG
ATTCGACTCGTATTTTTTCCTAGGAAAGGGCTTCGATCGAACAAAGTGGT
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protein sequence of EsuBft1056_4a-0001

>EsuBft1056_4 ID=EsuBft1056_4|Name=EsuBft1056_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MLSSSSRRVVHLRCAEALLRHVGAAGSTTTCRRPTAGVSARGMMAKAGAS
AASGGKKGGKGGGDSAKDSAGEHGLGVTPINFLKDGKDPSVMPDEEYPEW
LWNMQLPSLARLKRKKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF
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mRNA from alignment at Scaffold_427:267484..271409-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1056_4a-0001 ID=EsuBft1056_4a-0001|Name=EsuBft1056_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3926bp|location=Sequence derived from alignment at Scaffold_427:267484..271409- (Ectocarpus subulatus male Bft15b)
CACAGATCACAGTCGTGAGCAGAGCAAGACAGAGACAGAAGGTCGTCCTG
GCACGCACGACGGGGTTATCATGTTGAGTTCATCCTCAAGACGAGTGGTG
CACCTGCGATGCGCGGAAGCTTTGCTGAGACATGTGGGTAAGCAAAGTTT
TCTGCTGAGCAACATGTGGCTGCTTTCCTAGCTGCGCTGGACATTGCGTC
CCAGCACAGCAGCAGCAGTTTCTCCGGCACGGCCTACAATTGCGTGATTT
GTGCACTCTGGCATGTGAAATGACCTGTTTAGGAGAACGAAGTTAATGTT
TGTTTTGCAAGTATGCATGTTAGGCACGACTCTGCTCATATCTCACCATG
TGCGATCCGCCTGCAGCAGTAGACTGCATAGTCTACGCCAGGCATGGCGG
GAGTAACCCACCGCGGGAACTGCACCTACCCAACTCCTTTGTAATACAGC
AGTCTATCTGTAGGTTGGCGCCGTCCTTGTGTCCCACCACGGAGCTTGTT
AGGTAACAGTTGGTGCCCACCAGGGTTGCACGCCCATCGAATTGCCTTTA
GCAGTACGTACTCGTGTGTCGTGACTTGTCCGAGTTTGAGTCCAAAGAGC
ACTGCTGCACAGCACCCAGACGTCTAAACCTCCGGGTCATAGACTACCAG
TTTGTCCAGGCCAAGTTGTGTAATTCCATGCGCTCTTCTCGGAGGTCCAG
TTGTGCAGCGTGCCAAACGTGACCTCCACATGACTGCCGAAACGATCATG
GAAAAGTAGATTATATCTAGAAGGACGAGCACCTGCTGCGATGGCATCGA
CGATTGTTGTGGCGGTGCCCTTGTTGGCGACCGCCCAGCATTTCCTGCGA
AGGTCTACATGCATGTCTCTCGCCGGTACAGCAGTAGACAGACTGCGAGA
TCTTGCAGCGTCTCCCCTGTACTGCATGAAACGTGACCCTACGCTCTCAG
TCTAGAATAGAGTAGCTGTCGAAGTCCTTCACCCAACGTGTGCGATAGAG
TGCCCCAAACTCTGAGTGAGGTGCGCCTGTTGCGTGTCCGGCTGGTGCCG
CGCGTGGCTGCGCCTCAGCCAGTGTAGGCTTCGCAGGTTTTTTTTAAAGT
AAACATACCTCACAGATAAACCACCCGTTCGAGGTTTTTTGTATTCAGCA
AACGTGTTGGACTCAGCCGTGGCGGCAAATGAGCCGACTCCCCAGAGGCG
GCGCACTTTAGGCCCCGCGAATACTGTAACCAATCCTCCCTCTCCCTCCC
TGCACGAAAAAACCCACCCGCGTCGATACATGCGCGAACACCCGACGCAC
GAAAAGGGGCGGCGGGCTCTACCACCACCTGCCGCAGACCCACCGCCGGC
GTTAGCGCGAGAGGGATGATGGCGAAGGCGGGCGCCTCAGCGGCGTCCGG
CGGGAAGAAAGGGGGCAAGGGCGGCGGCGACAGCGCGAAAGACAGTGCGG
GGGAGCACGGGCTAGGCGTGACACCCATCAACTTCCTGAAGGATGGGAAG
GACCCTTCGGTCATGCCCGACGAGGAATACCCGGAATGGCTGTGGAATAT
GCAGGTATTTCTTTATGTACCGCTATATGACACATGTACACACACATGTC
CGCGACCCGAATGATGAAGCGAAACCGACAGCAGTCCGGTCGAAATAATC
ACAAGCAGGCCTAACAATCTGAACTCCACGTTTTCAGAAAATCACTCTGA
AGAATACCTACCCGTTGAAGAAATTAACCCAGTCCAAACGGTGTGATTGA
TTCTTCTTGCTAAGGTTTTTGCTGGCAAAGGGGGGTTGTCGTGTAGCGTT
TGGGGGGCGGGTGGGCACCATGCTCAACCCCGTCTTGCCTTAAGGGGGTC
GATTTTCCCAGGAAGAGGCCTGCTCGATGTACAGGGTCTCTCATAAGGTG
TCGTTATTTGGTAGGCGATGTTTTCGTTGCAGATTCAGGAGGCTTCTTTG
GGATAAACGACCGTCGCGAGATTCGTTGCCAGGAGCGTACCGTTGCCGGC
TTGGGGGTTGTCAGATACGGCGGTCGCCTGAAGCTGACGAAATCTCGATA
CTGACAAAAGTCCGAAAGCCGTCAACATCACTTGCGGAGTTTCTCGTCTT
CGGCAAATTTGCGGTGGAAAGGCGCTGGGAGTGCTTTTCTGTATTTTTGT
CCCTTACGATGACTTGCAACCTTGCCCCGTCCGTGTATTGATGCCCAGGA
ATAAAAATAGATGAATCAATATGCATCGCGTATGTTATTTATGGCCTGAA
CCAACGTGTCATTTTCGAGAACCTTCGCAATGAACTCGATCGGTGATTTT
GGTGGCGGCTGCATGCCGGCACCACGACCGGCAGCCGAACCAGCACTACC
TTTCAACAAACACAACCAGTTCTCGTTTCACGAGCGCGTGGGTTTGCACT
GGTCGCCGTGGCGTCTACAGTATACTTCCGGCCAACCCGCCCCATCTAAA
GGGACGTGTGCGCTCCATGTAACAAGAGTATTCGACGCAACAACTTACAC
GTGTCCACACTCTGCTCATGTACACACACCACGCGCGTTTTCAAAACTGT
GTTGAGTTTGTTACATGCCGCCGTCAAGCAATAGCTACATGTAGCAGCTG
ACCAGTTATATCCCCCTCCTCCACACTTTCCTCGTCCGCTGCCTCCCCTT
CGCCCCCGTAGCTGCCAAGTCTTGCCAGGTTGAAGCGTAAGAAGGAGGAG
GACTACACGCTCGACGAGTTCAGGCGATTCGTTCAGCTCGACAGCCGAGA
AAAGATCAAGCGCCAGAACCGATCGGGAAAATTCTAAGAAGCTTTATTGG
GTACGGGAGAAGAAGCAGAAAAAACGGTAGCTGCTGTGATTGGCTAGGGA
TTGATCGGTTGACCTGCTTTTTTGGGCTGGTTTGTCGCTCCTCTGCGGCG
CGGTTGGTGATACAGCAACAGGAAAATTACCGTAGGTGACATGATGCAAG
GCATCGCACCCCGTGGATTGATTTTCGAAGCTCGATTTTTCCCCTGCAAA
AAAAAACGCAGCGTCGAAGATTGCAGCGTTGGAGCCGCAGAGCGTTCCCA
AAAACTTCGTTGTGTCATTCATGGATCGTCTTCATCGCGGAGTCATCGAG
CCGTGAAAATCGGTCTAGGGGGGTGTGGTATGTTTGTCATGCCACCTACG
TCGACTCCGCAATTTCGGGGAGGGGATCACGATTGGCGCAGAGTTATGAT
GTTGGAGCGATGGCCTTTGTTGAGTGGAGAAGACGCGGTCGGTTGTATCG
CCGTGGCGGGGTCCCCAAGGACAGTAACCCGATTATTCATGGGCATACAA
TGTACGGGCCAGATGAGAAACGAAGACAGAGACCGCCCCGAGATTTTTCG
ATACCGGTGGGAAGTGCCACAGCGTTCTCGGCATGAACTGAGCCCCGACA
TGCTGGCCTATACTACTGCGTATAAGGGCGCCCTTGATCGAGAATGGTCG
GTGCCGCGTGTTTTGCGGGTGACGACGGGCGAAAGCACTCCGGTTTCGAA
CGGGAGTAGGGAGGTGGTCTACTGATCGACGACGCACTTGTGGTGTTGAG
ATTGCGTGCGGGCTTGGTCCCAGTGCCCAGGCTAGACACTAAAACTAGAA
CAGAAAATCGAGATTTCGCAGCCAGTAGCAAAAGACGAACGTCAATATTC
TTTTGAGGTGTGGTGCGCGCGGCCGGCGTCTAGCTGAATGTGTTGCTTCG
GAGTTGCTGTGGAGAACCGGGGATCTTGCTCATGTCTGAATTGGCAATAT
CACACCATTGATGTGTTTTCGGACTTGAGCGTATTCGATTAGCAATATCA
AGCCATTGATGTGTTTTTGACTCGTTGTCTCTTCCTCCTCTCATTTACGG
CGAGGGCGATTCCAGCATCTCGGTGGATTCGACTCGTATTTTTTCCTAGG
AAAGGGCTTCGATCGAACAAAGTGGT
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Coding sequence (CDS) from alignment at Scaffold_427:267484..271409-

>EsuBft1056_4a-0001 ID=EsuBft1056_4a-0001|Name=EsuBft1056_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_427:267484..271409- (Ectocarpus subulatus male Bft15b)
ATGTTGAGTTCATCCTCAAGACGAGTGGTGCACCTGCGATGCGCGGAAGC
TTTGCTGAGACATGTGGGGGCGGCGGGCTCTACCACCACCTGCCGCAGAC
CCACCGCCGGCGTTAGCGCGAGAGGGATGATGGCGAAGGCGGGCGCCTCA
GCGGCGTCCGGCGGGAAGAAAGGGGGCAAGGGCGGCGGCGACAGCGCGAA
AGACAGTGCGGGGGAGCACGGGCTAGGCGTGACACCCATCAACTTCCTGA
AGGATGGGAAGGACCCTTCGGTCATGCCCGACGAGGAATACCCGGAATGG
CTGTGGAATATGCAGCTGCCAAGTCTTGCCAGGTTGAAGCGTAAGAAGGA
GGAGGACTACACGCTCGACGAGTTCAGGCGATTCGTTCAGCTCGACAGCC
GAGAAAAGATCAAGCGCCAGAACCGATCGGGAAAATTCTAA
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