EsuBft1055_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1055_4a-0001
Unique NameEsuBft1055_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:29490..31638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LNY1
ProteomeIdEsuBft1055_4
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR011050
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR003368
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR012334
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length134
Hectar predicted targeting categorysignal peptide
Evalue2.14e-08
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_4aEsuBft1055_4aEctocarpus subulatus male Bft15bgeneScaffold_61 29490..31638 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_4a-0001-exonEsuBft1055_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 29490..29678 +
EsuBft1055_4a-0001-exonagat-exon-8624Ectocarpus subulatus male Bft15bexonScaffold_61 30487..31638 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_4a-0001-exonagat-five_prime_utr-328Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 29490..29678 +
EsuBft1055_4a-0001-exonagat-five_prime_utr-329Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 30487..30549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_4a-0001-cdsEsuBft1055_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 30550..31638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_4a-0001EsuBft1055_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 30550..31638 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1055_4a-0001 ID=EsuBft1055_4a-0001|Name=EsuBft1055_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1341bp|location=Sequence derived from alignment at Scaffold_61:29490..31638+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACTATTTCTTGTATCAATCGGCAGGGTGTGCAGCTGCCGCCGCCGGAAT
AGCGCGAGGAACGGCGCGACGACACCGAAGGAGAGATCCCTGACGTCGTG
GCGTGGCCAGAGGGACCCTCGCACATTGTATGCATCTGGCTAAGGAACCT
GCGGACGACCAAGCTGTGAGTGAGCCGTGAGTAATAAAGGCAGCAAGTAC
AGGGAAGGCGACAGAAGTTTTGCGGCCGACGAGGAGTGGAGGGGGGGCGG
GCATGGGGTGGAGCTCCTGCGGCACCCAACGGAGGGCGCGGTACCGTCGC
CGCTGGCTGCTCTCGTGCCTGGCGCTGTTAGTCCCGGCGGTGGTGCCACC
GGCGTGCGCCCAGGTAGCGACGACAACATGCGGCAGCACCTCGCCGCTCC
GAGTAGAAACCGTAGCCGAAGCCGAAGCACTCGGCGCCGCCGTTGACTGC
GCGAACGGCGGGACGGTGGAGGCCATTTGGGCGGGGACGGTTACTCTTAC
CGCTCCCATTTCCGTCGGGACGGGGACGTTTCTGTCCATCACCGGAGAAG
GCGACTCGGCGGAGGTGCTGGGCGGCGGTCAGACCCAGATGTTCTACATT
TCCTCGTCGGGAGGCCTGACGCTGACCGACCTCAAGCTCTCGGGAGGAAG
CGCTGCAAGCGGCGGCGCCGTCTACGCCAGCGCGGCATCGGTCGCCCTCA
ACAGTTGTGTCTTCGACGGCAACTTCGCAACCGCCGGGGACGGCGGGGCC
GTGGCGTTGGAGGGCGGGGACCTGACGATAGTCGGGGGGGAGTTCTCCGG
GAACAGCGCCAGCGGGAACGGTGGTGCCGTTCTTGCCACTGACGCTACGG
TGGTCATCCAGGACGGCACCCGGTTCGAGGGCAACAAGGCGGTGGAGGGT
GGAGGGCTGTACTGCGGAGGGGCGGAGAACTCGACGACGATGACAACAGT
CCCGTCATCATCGTCCGCCGCCGCCGCCACCTGCTCCCTAAGCGGAGCGG
TCTTCGGGGCCAATAACGCCTCCAGCGAGACCATCGTCGACTACGACCTG
ATCGAGTCGCCGTGGGTCACCCTCTACGGCGGTGGGGCGGCCGCCTTCTA
CCGGGGGGTGGTTGACATCACGGGGTCGGAATTCCTGGGGAACTACGCGC
AGGTCTCTGGCGGGGCCGTGTACGGCGGCAGCGATTCCGTCCTGACCATC
GACGGCTCCAGCTTCGAGGAGAACACCACGCCGGGCTACGGGGGGGGGCT
AGCTGCGTCGTCAGCTGTCCTCGGGGGAGACACGCTGCTGAGGAACAACT
CGGCCACGTCGAACGGCGCCGGGGTGAGTTTCGTTATCTAG
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protein sequence of EsuBft1055_4a-0001

>EsuBft1055_4 ID=EsuBft1055_4|Name=EsuBft1055_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MGWSSCGTQRRARYRRRWLLSCLALLVPAVVPPACAQVATTTCGSTSPLR
VETVAEAEALGAAVDCANGGTVEAIWAGTVTLTAPISVGTGTFLSITGEG
DSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALN
SCVFDGNFATAGDGGAVALEGGDLTIVGGEFSGNSASGNGGAVLATDATV
VIQDGTRFEGNKAVEGGGLYCGGAENSTTMTTVPSSSSAAAATCSLSGAV
FGANNASSETIVDYDLIESPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQ
VSGGAVYGGSDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNS
ATSNGAGVSFVI
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mRNA from alignment at Scaffold_61:29490..31638+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1055_4a-0001 ID=EsuBft1055_4a-0001|Name=EsuBft1055_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2149bp|location=Sequence derived from alignment at Scaffold_61:29490..31638+ (Ectocarpus subulatus male Bft15b)
AACTATTTCTTGTATCAATCGGCAGGGTGTGCAGCTGCCGCCGCCGGAAT
AGCGCGAGGAACGGCGCGACGACACCGAAGGAGAGATCCCTGACGTCGTG
GCGTGGCCAGAGGGACCCTCGCACATTGTATGCATCTGGCTAAGGAACCT
GCGGACGACCAAGCTGTGAGTGAGCCGTGAGTAATAAAGGTAGGTTTCCT
CTTCATAGGTTGGTTGGAGGTGCCTCTGTGTGTGTGCGTGCCGTGCACGC
TTCTGACATTCATTCGGTGGCGGAAGCAAGGACATGCGAGGAGAGCAACT
TGGCGCATGATGAGGGATGCGCGGGCACACAGCAGCAGTAGCGTCGGCAG
GGGCGTGTGGCTCAGAGCGAGAGACCGAGAAACCAGTTTGGCATGTTGCA
GGGGTCCATCCAGAAGGCGTTGTGACGCTGCGTGAGTACTTGTACAGGGT
CACTGGGTCCCCTTGTTCGGGGCTGTTTATCGTCTACCAGCAGTTCCTCG
AGAGACAGAACTTGTGATGCCCTGTACCCGCTGCTGGGTGATAGACGTCG
TGTGTATGCTCTTACTACAGCAGTACCTACTTTTCTGCTCCAGAAAACTG
ATGCGCAGAGTGCGGCGGTGGCGGCAGTGACGTGTTTTTGTCTTTCTTGC
TCTTTCTGCTCTAGAACACATGGCAAGATCCATAGTCTGTGTACTTGTAC
ACAATAACTATAGAATTGCTGTGCTGTTGGCAGCTGCTTCCTACTGGCGT
GCCTGCCCGTGGCCATGTGCAGTTTGCTGCCGTTCCACAAAAAAAATCTC
CCCGGATTCCTTGCGCCTGTACGCGCCCCGCTCCCTGTGCAATCGGAATT
TGTGTTGTTTTTTCTCTTGTTCCGCTGTCCCCAACGAGACTCACGTCAAT
GTATTTATTCTCGCTCCACTGCATCCCGCCGCTGTTGCTGTCAGGGTCAA
ATACCACAGGGCAAAGCGGTTGGGTGTACACATCCAAACAACGGCAGGCA
GCAAGTACAGGGAAGGCGACAGAAGTTTTGCGGCCGACGAGGAGTGGAGG
GGGGGCGGGCATGGGGTGGAGCTCCTGCGGCACCCAACGGAGGGCGCGGT
ACCGTCGCCGCTGGCTGCTCTCGTGCCTGGCGCTGTTAGTCCCGGCGGTG
GTGCCACCGGCGTGCGCCCAGGTAGCGACGACAACATGCGGCAGCACCTC
GCCGCTCCGAGTAGAAACCGTAGCCGAAGCCGAAGCACTCGGCGCCGCCG
TTGACTGCGCGAACGGCGGGACGGTGGAGGCCATTTGGGCGGGGACGGTT
ACTCTTACCGCTCCCATTTCCGTCGGGACGGGGACGTTTCTGTCCATCAC
CGGAGAAGGCGACTCGGCGGAGGTGCTGGGCGGCGGTCAGACCCAGATGT
TCTACATTTCCTCGTCGGGAGGCCTGACGCTGACCGACCTCAAGCTCTCG
GGAGGAAGCGCTGCAAGCGGCGGCGCCGTCTACGCCAGCGCGGCATCGGT
CGCCCTCAACAGTTGTGTCTTCGACGGCAACTTCGCAACCGCCGGGGACG
GCGGGGCCGTGGCGTTGGAGGGCGGGGACCTGACGATAGTCGGGGGGGAG
TTCTCCGGGAACAGCGCCAGCGGGAACGGTGGTGCCGTTCTTGCCACTGA
CGCTACGGTGGTCATCCAGGACGGCACCCGGTTCGAGGGCAACAAGGCGG
TGGAGGGTGGAGGGCTGTACTGCGGAGGGGCGGAGAACTCGACGACGATG
ACAACAGTCCCGTCATCATCGTCCGCCGCCGCCGCCACCTGCTCCCTAAG
CGGAGCGGTCTTCGGGGCCAATAACGCCTCCAGCGAGACCATCGTCGACT
ACGACCTGATCGAGTCGCCGTGGGTCACCCTCTACGGCGGTGGGGCGGCC
GCCTTCTACCGGGGGGTGGTTGACATCACGGGGTCGGAATTCCTGGGGAA
CTACGCGCAGGTCTCTGGCGGGGCCGTGTACGGCGGCAGCGATTCCGTCC
TGACCATCGACGGCTCCAGCTTCGAGGAGAACACCACGCCGGGCTACGGG
GGGGGGCTAGCTGCGTCGTCAGCTGTCCTCGGGGGAGACACGCTGCTGAG
GAACAACTCGGCCACGTCGAACGGCGCCGGGGTGAGTTTCGTTATCTAG
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Coding sequence (CDS) from alignment at Scaffold_61:29490..31638+

>EsuBft1055_4a-0001 ID=EsuBft1055_4a-0001|Name=EsuBft1055_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_61:29490..31638+ (Ectocarpus subulatus male Bft15b)
ATGGGGTGGAGCTCCTGCGGCACCCAACGGAGGGCGCGGTACCGTCGCCG
CTGGCTGCTCTCGTGCCTGGCGCTGTTAGTCCCGGCGGTGGTGCCACCGG
CGTGCGCCCAGGTAGCGACGACAACATGCGGCAGCACCTCGCCGCTCCGA
GTAGAAACCGTAGCCGAAGCCGAAGCACTCGGCGCCGCCGTTGACTGCGC
GAACGGCGGGACGGTGGAGGCCATTTGGGCGGGGACGGTTACTCTTACCG
CTCCCATTTCCGTCGGGACGGGGACGTTTCTGTCCATCACCGGAGAAGGC
GACTCGGCGGAGGTGCTGGGCGGCGGTCAGACCCAGATGTTCTACATTTC
CTCGTCGGGAGGCCTGACGCTGACCGACCTCAAGCTCTCGGGAGGAAGCG
CTGCAAGCGGCGGCGCCGTCTACGCCAGCGCGGCATCGGTCGCCCTCAAC
AGTTGTGTCTTCGACGGCAACTTCGCAACCGCCGGGGACGGCGGGGCCGT
GGCGTTGGAGGGCGGGGACCTGACGATAGTCGGGGGGGAGTTCTCCGGGA
ACAGCGCCAGCGGGAACGGTGGTGCCGTTCTTGCCACTGACGCTACGGTG
GTCATCCAGGACGGCACCCGGTTCGAGGGCAACAAGGCGGTGGAGGGTGG
AGGGCTGTACTGCGGAGGGGCGGAGAACTCGACGACGATGACAACAGTCC
CGTCATCATCGTCCGCCGCCGCCGCCACCTGCTCCCTAAGCGGAGCGGTC
TTCGGGGCCAATAACGCCTCCAGCGAGACCATCGTCGACTACGACCTGAT
CGAGTCGCCGTGGGTCACCCTCTACGGCGGTGGGGCGGCCGCCTTCTACC
GGGGGGTGGTTGACATCACGGGGTCGGAATTCCTGGGGAACTACGCGCAG
GTCTCTGGCGGGGCCGTGTACGGCGGCAGCGATTCCGTCCTGACCATCGA
CGGCTCCAGCTTCGAGGAGAACACCACGCCGGGCTACGGGGGGGGGCTAG
CTGCGTCGTCAGCTGTCCTCGGGGGAGACACGCTGCTGAGGAACAACTCG
GCCACGTCGAACGGCGCCGGGGTGAGTTTCGTTATCTAG
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