EsuBft1055_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1055_3a-0001
Unique NameEsuBft1055_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:23194..24097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000001213
ProteomeIdEsuBft1055_3
Protein domainsSSF56672
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length904
Evalue2.67e-19
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_3aEsuBft1055_3aEctocarpus subulatus male Bft15bgeneScaffold_61 23194..24097 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_3a-0001-exonEsuBft1055_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 23194..24097 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_3a-0001-exonagat-five_prime_utr-327Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 23194..23422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_3a-0001-cdsEsuBft1055_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 23423..24097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_3a-0001EsuBft1055_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 23423..24097 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1055_3a-0001 ID=EsuBft1055_3a-0001|Name=EsuBft1055_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_61:23194..24097+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCNNNNNNNNNNNCCGGTCCAACTGTAACAACTACAGAGGGATTTCG
CTACTATCTCACGTAGGCAGGGTCCCCATCAAGATCATCACCAACCGTCG
AAGCGCCTTCTGCGAAGCCAACATCCTCCCGGAGGAACAGTGCGGAGTTC
GACCCGGGCGATCCAACGTCGACATGCTGTTCGTCGTGCGCCGCCCCCAG
GAGCTGGGGCGGAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAAC
AAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAG
GGCCGGGATTCCCGCGAAGCTGATCGAGGTCATCCGCCAATTCCACGATG
GAATGCGGGCCCGGATGCGCATGGACGAGGGAGAACTATCGGACTGGTTC
TTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTC
CAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCA
AGGATGATGTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGCCTCCACCACTGACCATCGAAGCCGCGGGACAG
AAATACCCCCAGACGGCCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGA
ACATGACGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGCGGG
CGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGCAAGCGCCA
TTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGGCGATGGGGGCACTGCT
NNNN
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protein sequence of EsuBft1055_3a-0001

>EsuBft1055_3 ID=EsuBft1055_3|Name=EsuBft1055_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=225bp
MCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARMRMDE
GELSDWFFVTQGVRQGCVLSPLLSNIFFAEVLEVVVIRFSKDDVVXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPL
TIEAAGQKYPQTAEFRYLGGLVNEHDDLTREINYRSRGARACLRRYGREL
FDRPQAPFRLKIRLLQAEAMGALLX
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mRNA from alignment at Scaffold_61:23194..24097+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1055_3a-0001 ID=EsuBft1055_3a-0001|Name=EsuBft1055_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_61:23194..24097+ (Ectocarpus subulatus male Bft15b)
CATCCNNNNNNNNNNNCCGGTCCAACTGTAACAACTACAGAGGGATTTCG
CTACTATCTCACGTAGGCAGGGTCCCCATCAAGATCATCACCAACCGTCG
AAGCGCCTTCTGCGAAGCCAACATCCTCCCGGAGGAACAGTGCGGAGTTC
GACCCGGGCGATCCAACGTCGACATGCTGTTCGTCGTGCGCCGCCCCCAG
GAGCTGGGGCGGAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAAC
AAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAG
GGCCGGGATTCCCGCGAAGCTGATCGAGGTCATCCGCCAATTCCACGATG
GAATGCGGGCCCGGATGCGCATGGACGAGGGAGAACTATCGGACTGGTTC
TTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTC
CAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCA
AGGATGATGTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGCCTCCACCACTGACCATCGAAGCCGCGGGACAG
AAATACCCCCAGACGGCCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGA
ACATGACGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGCGGG
CGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGCAAGCGCCA
TTCCGACTCAAGATCCGCCTGCTCCAGGCGGAGGCGATGGGGGCACTGCT
NNNN
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Coding sequence (CDS) from alignment at Scaffold_61:23194..24097+

>EsuBft1055_3a-0001 ID=EsuBft1055_3a-0001|Name=EsuBft1055_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_61:23194..24097+ (Ectocarpus subulatus male Bft15b)
ATGTGCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGAT
GCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAGG
TCATCCGCCAATTCCACGATGGAATGCGGGCCCGGATGCGCATGGACGAG
GGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATG
TGTGCTATCCCCACTGCTGTCCAACATCTTCTTCGCCGAGGTCCTCGAGG
TCGTTGTCATCCGATTCAGCAAGGATGATGTTGTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCCACCACTG
ACCATCGAAGCCGCGGGACAGAAATACCCCCAGACGGCCGAGTTCCGGTA
CCTCGGTGGCCTCGTCAACGAACATGACGACCTCACCCGGGAGATCAACT
ACAGGAGCAGAGGAGCGCGGGCGTGCCTCAGGCGATATGGCCGGGAGCTC
TTCGACAGACCGCAAGCGCCATTCCGACTCAAGATCCGCCTGCTCCAGGC
GGAGGCGATGGGGGCACTGCTNNNN
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