EsuBft1055_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1055_13a-0001
Unique NameEsuBft1055_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:113125..113552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN28
ProteomeIdEsuBft1055_13
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length42
Hectar predicted targeting categoryother localisation
Evalue4.18e-19
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDDE superfamily endonuclease
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_13aEsuBft1055_13aEctocarpus subulatus male Bft15bgeneScaffold_61 113125..113552 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_13a-0001-exonEsuBft1055_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 113125..113552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_13a-0001-cdsEsuBft1055_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 113125..113358 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_13a-0001-exonagat-three_prime_utr-535Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 113359..113552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_13a-0001EsuBft1055_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 113125..113358 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1055_13a-0001 ID=EsuBft1055_13a-0001|Name=EsuBft1055_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=428bp|location=Sequence derived from alignment at Scaffold_61:113125..113552+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATGGGCATGCCTCACACATGAGCTACGAGGTCATCAAATTGGC
CATGGAACTCAACATCATCCTCTTCCAGCTGCCCTCCCACACGTCGCACA
TCACCCAGCCGTTGGACGTCGTCGCTTTCGGAACCTTCAAGAAGGAGGTG
ACTAAAGTNGAGGAGCTTTACACCGGAGCGGAACAAAGCATCCTTCGGCG
GGGCTGTGGCCTGTGGACGTGGATCGAGCGCTGACCCGGCTTCAGGGCAC
GGCGAAGAGGAAAGAGGCCGACCGGGCGCCCACCCCTTGAGGATGTCCCC
ATCGCTATGACCCACGAGCAGGTGCAAGAGGCCATCGGAGAGGGACTGAT
TCTTGCCGTGGCGGCAAGCGAAGTACCGAAAATATACCCATTTTTGAACA
ACTATTTTTTGAGCGTAACAATTCCTTT
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protein sequence of EsuBft1055_13a-0001

>EsuBft1055_13 ID=EsuBft1055_13|Name=EsuBft1055_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MLDGHASHMSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEV
TKVEELYTGAEQSILRRGCGLWTWIER
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mRNA from alignment at Scaffold_61:113125..113552+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1055_13a-0001 ID=EsuBft1055_13a-0001|Name=EsuBft1055_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=428bp|location=Sequence derived from alignment at Scaffold_61:113125..113552+ (Ectocarpus subulatus male Bft15b)
ATGCTTGATGGGCATGCCTCACACATGAGCTACGAGGTCATCAAATTGGC
CATGGAACTCAACATCATCCTCTTCCAGCTGCCCTCCCACACGTCGCACA
TCACCCAGCCGTTGGACGTCGTCGCTTTCGGAACCTTCAAGAAGGAGGTG
ACTAAAGTNGAGGAGCTTTACACCGGAGCGGAACAAAGCATCCTTCGGCG
GGGCTGTGGCCTGTGGACGTGGATCGAGCGCTGACCCGGCTTCAGGGCAC
GGCGAAGAGGAAAGAGGCCGACCGGGCGCCCACCCCTTGAGGATGTCCCC
ATCGCTATGACCCACGAGCAGGTGCAAGAGGCCATCGGAGAGGGACTGAT
TCTTGCCGTGGCGGCAAGCGAAGTACCGAAAATATACCCATTTTTGAACA
ACTATTTTTTGAGCGTAACAATTCCTTT
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Coding sequence (CDS) from alignment at Scaffold_61:113125..113552+

>EsuBft1055_13a-0001 ID=EsuBft1055_13a-0001|Name=EsuBft1055_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_61:113125..113552+ (Ectocarpus subulatus male Bft15b)
ATGCTTGATGGGCATGCCTCACACATGAGCTACGAGGTCATCAAATTGGC
CATGGAACTCAACATCATCCTCTTCCAGCTGCCCTCCCACACGTCGCACA
TCACCCAGCCGTTGGACGTCGTCGCTTTCGGAACCTTCAAGAAGGAGGTG
ACTAAAGTNGAGGAGCTTTACACCGGAGCGGAACAAAGCATCCTTCGGCG
GGGCTGTGGCCTGTGGACGTGGATCGAGCGCTGA
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