EsuBft1055_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1055_12a-0001
Unique NameEsuBft1055_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:99866..100991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1055_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length105
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_12aEsuBft1055_12aEctocarpus subulatus male Bft15bgeneScaffold_61 99866..100991 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_12a-0001-exonEsuBft1055_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 99866..100871 +
EsuBft1055_12a-0001-exonagat-exon-8657Ectocarpus subulatus male Bft15bexonScaffold_61 100948..100991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_12a-0001-cdsEsuBft1055_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 99866..100261 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_12a-0001-exonagat-three_prime_utr-533Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 100262..100871 +
EsuBft1055_12a-0001-exonagat-three_prime_utr-534Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 100948..100991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_12a-0001EsuBft1055_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 99866..100261 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1055_12a-0001 ID=EsuBft1055_12a-0001|Name=EsuBft1055_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1050bp|location=Sequence derived from alignment at Scaffold_61:99866..100991+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCACGACACTGCTGCAGAGCACAGCTTGAGAGAAACAGGGGGCGC
GGGCAGCTCGAGTCCTCCGGCAGGCGACAACAACGACGACGGAACCTCCC
GCCCCGACCAGCAGGCGCTCCGGGAGAGTCATGACATGAACCAGGCAGCC
CCCGCCGCTACCGTGCCGCCAGTCCTACCGAGTCATGAGCTACCGGGCAC
TGCAGTGGGAACCCTGCCGCTGCAAGGCTTCGAGGTAGCGCTGCAGGCGT
CTGTAGGTAGCGGGGGCGAAGCACCCACCGAGCTCAATGCGACCAGTCTC
GAGAGCATGATTCTACCCATCGGCGAGGAGTATTTAGTTGTGTACACTCT
CTTCTCTAGTCTATATCCCAGCAGCAGCATATATGACGACTATTAAATAG
GAACAGCGGCAAGTTCATTCGAAAATAACAATACGCCAATATAATAACAG
GCGTCTTCCTGAACGCTTCTCTCAGAATGGCGGCGAAAGCAACAAAAGCT
CGTACATACATCGTTACCTGCTGCTGTGCCGCACGAATTGGGTACATTTA
AGATAACTCCCCACGCCTGCCTAGACATATGTGGGTTGCAACGCGCTGTA
AAACACGCCACCCCAAATATAGCCCCCAAAGTATGCGCTACCAAAGACGC
GTGACGCATGGACGAGTGGAGTGAGGATGGCTGTTTTACGGAAACCTCAC
AGGTTGAGTAATGTATGAGATTGCCAGACACATCGACGTGTTGAGTGATT
ATAGCTGTATACTGGAACCTCAAGGGTTGAGTGAGGTTTGAGATTGCCAG
ACACATGGACGGGTTGAGTGGGGATAGCTTCATACTGAAAGCCTACGGGT
TGAGTGATGTTGGAGTGCCGGACATATAGATGCATTGAGTGGGGATAGAC
ACATGCTGAATCTCACAGGTGATTTGTAATGGAGATTGCCGGACACATCG
ACGTGTTGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGGATTGGT
TTTTGATGCCAGACACATAGACGCTTTGAGTGAGGATAAACACATACTGA
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protein sequence of EsuBft1055_12a-0001

>EsuBft1055_12 ID=EsuBft1055_12|Name=EsuBft1055_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MDHDTAAEHSLRETGGAGSSSPPAGDNNDDGTSRPDQQALRESHDMNQAA
PAATVPPVLPSHELPGTAVGTLPLQGFEVALQASVGSGGEAPTELNATSL
ESMILPIGEEYLVVYTLFSSLYPSSSIYDDY
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mRNA from alignment at Scaffold_61:99866..100991+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1055_12a-0001 ID=EsuBft1055_12a-0001|Name=EsuBft1055_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1126bp|location=Sequence derived from alignment at Scaffold_61:99866..100991+ (Ectocarpus subulatus male Bft15b)
ATGGATCACGACACTGCTGCAGAGCACAGCTTGAGAGAAACAGGGGGCGC
GGGCAGCTCGAGTCCTCCGGCAGGCGACAACAACGACGACGGAACCTCCC
GCCCCGACCAGCAGGCGCTCCGGGAGAGTCATGACATGAACCAGGCAGCC
CCCGCCGCTACCGTGCCGCCAGTCCTACCGAGTCATGAGCTACCGGGCAC
TGCAGTGGGAACCCTGCCGCTGCAAGGCTTCGAGGTAGCGCTGCAGGCGT
CTGTAGGTAGCGGGGGCGAAGCACCCACCGAGCTCAATGCGACCAGTCTC
GAGAGCATGATTCTACCCATCGGCGAGGAGTATTTAGTTGTGTACACTCT
CTTCTCTAGTCTATATCCCAGCAGCAGCATATATGACGACTATTAAATAG
GAACAGCGGCAAGTTCATTCGAAAATAACAATACGCCAATATAATAACAG
GCGTCTTCCTGAACGCTTCTCTCAGAATGGCGGCGAAAGCAACAAAAGCT
CGTACATACATCGTTACCTGCTGCTGTGCCGCACGAATTGGGTACATTTA
AGATAACTCCCCACGCCTGCCTAGACATATGTGGGTTGCAACGCGCTGTA
AAACACGCCACCCCAAATATAGCCCCCAAAGTATGCGCTACCAAAGACGC
GTGACGCATGGACGAGTGGAGTGAGGATGGCTGTTTTACGGAAACCTCAC
AGGTTGAGTAATGTATGAGATTGCCAGACACATCGACGTGTTGAGTGATT
ATAGCTGTATACTGGAACCTCAAGGGTTGAGTGAGGTTTGAGATTGCCAG
ACACATGGACGGGTTGAGTGGGGATAGCTTCATACTGAAAGCCTACGGGT
TGAGTGATGTTGGAGTGCCGGACATATAGATGCATTGAGTGGGGATAGAC
ACATGCTGAATCTCACAGGTGATTTGTAATGGAGATTGCCGGACACATCG
ACGTGTTGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGGATTGGT
TTTTGAGTTTGCCGAACACATAGACGCGATGAGTGGGGATAGCTTCATAC
CGAAACCCCACCGGTTGAGTGATGTTGGATAGTGCCAGACACATAGACGC
TTTGAGTGAGGATAAACACATACTGA
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Coding sequence (CDS) from alignment at Scaffold_61:99866..100991+

>EsuBft1055_12a-0001 ID=EsuBft1055_12a-0001|Name=EsuBft1055_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_61:99866..100991+ (Ectocarpus subulatus male Bft15b)
ATGGATCACGACACTGCTGCAGAGCACAGCTTGAGAGAAACAGGGGGCGC
GGGCAGCTCGAGTCCTCCGGCAGGCGACAACAACGACGACGGAACCTCCC
GCCCCGACCAGCAGGCGCTCCGGGAGAGTCATGACATGAACCAGGCAGCC
CCCGCCGCTACCGTGCCGCCAGTCCTACCGAGTCATGAGCTACCGGGCAC
TGCAGTGGGAACCCTGCCGCTGCAAGGCTTCGAGGTAGCGCTGCAGGCGT
CTGTAGGTAGCGGGGGCGAAGCACCCACCGAGCTCAATGCGACCAGTCTC
GAGAGCATGATTCTACCCATCGGCGAGGAGTATTTAGTTGTGTACACTCT
CTTCTCTAGTCTATATCCCAGCAGCAGCATATATGACGACTATTAA
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